Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 LINC01505-205ENST00000636028 2298 ntTSL 5 BASIC6.14□□□□□ -1.43
TRIM39Q9HCM9 AMOT-206ENST00000524145 3330 ntAPPRIS ALT2 TSL 5 BASIC6.14□□□□□ -1.43
TRIM39Q9HCM9 AC068870.3-201ENST00000625077 2536 ntBASIC6.14□□□□□ -1.43
TRIM39Q9HCM9 SNX13-213ENST00000611725 6817 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
TRIM39Q9HCM9 GTF3C3-202ENST00000409364 1736 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
TRIM39Q9HCM9 LMNTD1-207ENST00000539744 1729 ntAPPRIS ALT2 TSL 1 (best) BASIC6.13□□□□□ -1.43
TRIM39Q9HCM9 OSBPL9-203ENST00000428468 2893 ntAPPRIS P3 TSL 1 (best) BASIC6.13□□□□□ -1.43
TRIM39Q9HCM9 FSCB-201ENST00000340446 2938 ntAPPRIS P1 BASIC6.13□□□□□ -1.43
TRIM39Q9HCM9 NUDCD1-202ENST00000427660 2098 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
TRIM39Q9HCM9 RMST-202ENST00000541282 2099 ntTSL 2 BASIC6.13□□□□□ -1.43
TRIM39Q9HCM9 NCOR1-202ENST00000395848 3106 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
TRIM39Q9HCM9 FRK-201ENST00000606080 13230 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
TRIM39Q9HCM9 LINC01422-201ENST00000434868 6043 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
TRIM39Q9HCM9 RNU6-553P-201ENST00000364047 96 ntBASIC6.13□□□□□ -1.43
TRIM39Q9HCM9 SNORA43.1-201ENST00000364863 140 ntBASIC6.13□□□□□ -1.43
TRIM39Q9HCM9 ZNF669-202ENST00000366500 489 ntTSL 3 BASIC6.13□□□□□ -1.43
TRIM39Q9HCM9 SPANXN4-201ENST00000370504 560 ntAPPRIS ALT2 TSL 5 BASIC6.13□□□□□ -1.43
TRIM39Q9HCM9 ZCCHC6-202ENST00000375947 611 ntTSL 5 BASIC6.13□□□□□ -1.43
TRIM39Q9HCM9 BTBD9-203ENST00000403056 1155 ntTSL 5 BASIC6.13□□□□□ -1.43
TRIM39Q9HCM9 RNASE9-202ENST00000404716 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC6.13□□□□□ -1.43
TRIM39Q9HCM9 BTF3L4P1-201ENST00000413813 468 ntBASIC6.13□□□□□ -1.43
TRIM39Q9HCM9 AL391704.3-201ENST00000425365 831 ntTSL 3 BASIC6.13□□□□□ -1.43
TRIM39Q9HCM9 GAPDHP23-201ENST00000444823 993 ntBASIC6.13□□□□□ -1.43
TRIM39Q9HCM9 REG1CP-206ENST00000447469 496 ntBASIC6.13□□□□□ -1.43
TRIM39Q9HCM9 CSN1S2AP-201ENST00000451783 779 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
TRIM39Q9HCM9 AC097262.1-201ENST00000452559 548 ntBASIC6.13□□□□□ -1.43
TRIM39Q9HCM9 MIR4432HG-202ENST00000453476 703 ntTSL 3 BASIC6.13□□□□□ -1.43
TRIM39Q9HCM9 OR7E157P-201ENST00000494376 911 ntBASIC6.13□□□□□ -1.43
TRIM39Q9HCM9 OR7E99P-201ENST00000505750 922 ntBASIC6.13□□□□□ -1.43
TRIM39Q9HCM9 OTUD4-208ENST00000509620 864 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
TRIM39Q9HCM9 AC010587.2-201ENST00000511727 448 ntBASIC6.13□□□□□ -1.43
TRIM39Q9HCM9 AC005150.1-201ENST00000512831 628 ntTSL 2 BASIC6.13□□□□□ -1.43
TRIM39Q9HCM9 CYP4F27P-201ENST00000514557 494 ntBASIC6.13□□□□□ -1.43
TRIM39Q9HCM9 LINC02201-203ENST00000514657 674 ntTSL 3 BASIC6.13□□□□□ -1.43
TRIM39Q9HCM9 RN7SKP70-201ENST00000516655 271 ntBASIC6.13□□□□□ -1.43
TRIM39Q9HCM9 AP001208.1-201ENST00000518612 408 ntTSL 3 BASIC6.13□□□□□ -1.43
TRIM39Q9HCM9 RSF1-IT2-201ENST00000529656 566 ntTSL 5 BASIC6.13□□□□□ -1.43
TRIM39Q9HCM9 LINC01489-201ENST00000542689 605 ntTSL 5 BASIC6.13□□□□□ -1.43
TRIM39Q9HCM9 AC023161.2-201ENST00000551218 780 ntBASIC6.13□□□□□ -1.43
TRIM39Q9HCM9 AC024909.2-201ENST00000553035 286 ntBASIC6.13□□□□□ -1.43
TRIM39Q9HCM9 RNASE9-205ENST00000553706 1172 ntAPPRIS ALT2 TSL 1 (best) BASIC6.13□□□□□ -1.43
TRIM39Q9HCM9 AL161751.1-201ENST00000555636 1044 ntTSL 5 BASIC6.13□□□□□ -1.43
TRIM39Q9HCM9 AL135838.1-201ENST00000556080 235 ntTSL 3 BASIC6.13□□□□□ -1.43
TRIM39Q9HCM9 LINC01146-207ENST00000557339 397 ntTSL 3 BASIC6.13□□□□□ -1.43
TRIM39Q9HCM9 AC012050.1-201ENST00000558185 472 ntTSL 3 BASIC6.13□□□□□ -1.43
TRIM39Q9HCM9 C15orf41-205ENST00000563167 772 ntTSL 3 BASIC6.13□□□□□ -1.43
TRIM39Q9HCM9 LINC2194-202ENST00000567624 506 ntTSL 3 BASIC6.13□□□□□ -1.43
TRIM39Q9HCM9 MIR3189-201ENST00000578735 73 ntBASIC6.13□□□□□ -1.43
TRIM39Q9HCM9 AC027229.1-201ENST00000583887 253 ntBASIC6.13□□□□□ -1.43
TRIM39Q9HCM9 MIR4999-201ENST00000585029 91 ntBASIC6.13□□□□□ -1.43
TRIM39Q9HCM9 VN1R84P-201ENST00000593697 235 ntBASIC6.13□□□□□ -1.43
TRIM39Q9HCM9 AC098617.1-205ENST00000595918 1032 ntTSL 5 BASIC6.13□□□□□ -1.43
TRIM39Q9HCM9 AL583832.1-201ENST00000603227 784 ntBASIC6.13□□□□□ -1.43
TRIM39Q9HCM9 AC092681.3-201ENST00000609463 678 ntBASIC6.13□□□□□ -1.43
TRIM39Q9HCM9 ZNF630-AS1-201ENST00000614448 397 ntTSL 3 BASIC6.13□□□□□ -1.43
TRIM39Q9HCM9 Metazoa_SRP.199-201ENST00000615501 281 ntBASIC6.13□□□□□ -1.43
TRIM39Q9HCM9 AC048338.2-201ENST00000623601 684 ntTSL 5 BASIC6.13□□□□□ -1.43
TRIM39Q9HCM9 AC002384.2-201ENST00000636036 790 ntTSL 3 BASIC6.13□□□□□ -1.43
TRIM39Q9HCM9 EIF3EP1-201ENST00000433978 1316 ntBASIC6.13□□□□□ -1.43
TRIM39Q9HCM9 ZNF542P-204ENST00000482727 1305 ntBASIC6.13□□□□□ -1.43
TRIM39Q9HCM9 HDAC9-203ENST00000406072 4102 ntTSL 5 BASIC6.13□□□□□ -1.43
TRIM39Q9HCM9 IFIT1P1-201ENST00000400497 1449 ntBASIC6.13□□□□□ -1.43
TRIM39Q9HCM9 CNGA1-202ENST00000402813 2867 ntAPPRIS ALT2 TSL 1 (best) BASIC6.13□□□□□ -1.43
TRIM39Q9HCM9 AC104966.1-201ENST00000467010 1464 ntBASIC6.13□□□□□ -1.43
TRIM39Q9HCM9 KCNRG-202ENST00000360473 1623 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
TRIM39Q9HCM9 ZNF192P1-201ENST00000440790 1628 ntTSL 5 BASIC6.13□□□□□ -1.43
TRIM39Q9HCM9 CYP3A7-CYP3A51P-202ENST00000620220 1704 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
TRIM39Q9HCM9 LINC02010-202ENST00000471638 1829 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
TRIM39Q9HCM9 PGM3-215ENST00000616566 5905 ntTSL 2 BASIC6.13□□□□□ -1.43
TRIM39Q9HCM9 CCDC129-211ENST00000615280 4142 ntAPPRIS ALT2 TSL 2 BASIC6.13□□□□□ -1.43
TRIM39Q9HCM9 BICRAL-202ENST00000394168 6515 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
TRIM39Q9HCM9 SLFN12-201ENST00000304905 2383 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
TRIM39Q9HCM9 PRKDC-202ENST00000338368 12784 ntAPPRIS ALT2 TSL 1 (best) BASIC6.12□□□□□ -1.43
TRIM39Q9HCM9 SETDB2-205ENST00000611815 5313 ntAPPRIS ALT2 TSL 5 BASIC6.12□□□□□ -1.43
TRIM39Q9HCM9 AC083837.1-201ENST00000565297 2994 ntBASIC6.12□□□□□ -1.43
TRIM39Q9HCM9 PGBD4-201ENST00000397766 6612 ntAPPRIS P1 BASIC6.12□□□□□ -1.43
TRIM39Q9HCM9 MAGI2-222ENST00000636039 5671 ntTSL 5 BASIC6.12□□□□□ -1.43
TRIM39Q9HCM9 DCTN5-201ENST00000300087 11011 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
TRIM39Q9HCM9 IL6STP1-201ENST00000346911 1020 ntBASIC6.12□□□□□ -1.43
TRIM39Q9HCM9 KIF16B-202ENST00000355755 606 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
TRIM39Q9HCM9 SNORD8-201ENST00000363915 110 ntBASIC6.12□□□□□ -1.43
TRIM39Q9HCM9 RNU4-24P-201ENST00000364565 139 ntBASIC6.12□□□□□ -1.43
TRIM39Q9HCM9 DPH5-203ENST00000370109 1316 ntAPPRIS P4 TSL 1 (best) BASIC6.12□□□□□ -1.43
TRIM39Q9HCM9 ADIG-201ENST00000373348 430 ntTSL 2 BASIC6.12□□□□□ -1.43
TRIM39Q9HCM9 MAPK6PS3-201ENST00000403865 2162 ntBASIC6.12□□□□□ -1.43
TRIM39Q9HCM9 RNA5SP431-201ENST00000410312 120 ntBASIC6.12□□□□□ -1.43
TRIM39Q9HCM9 LINC00396-201ENST00000411690 439 ntTSL 3 BASIC6.12□□□□□ -1.43
TRIM39Q9HCM9 AL596448.1-201ENST00000415024 392 ntBASIC6.12□□□□□ -1.43
TRIM39Q9HCM9 LINC01646-201ENST00000420522 682 ntTSL 3 BASIC6.12□□□□□ -1.43
TRIM39Q9HCM9 AL137071.1-201ENST00000422150 243 ntTSL 3 BASIC6.12□□□□□ -1.43
TRIM39Q9HCM9 VEZT-204ENST00000436874 4562 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
TRIM39Q9HCM9 AL139237.2-201ENST00000438454 493 ntTSL 3 BASIC6.12□□□□□ -1.43
TRIM39Q9HCM9 AC012445.1-201ENST00000442831 607 ntTSL 3 BASIC6.12□□□□□ -1.43
TRIM39Q9HCM9 AC016772.1-201ENST00000444170 1261 ntBASIC6.12□□□□□ -1.43
TRIM39Q9HCM9 MTCYBP3-201ENST00000445588 1137 ntBASIC6.12□□□□□ -1.43
TRIM39Q9HCM9 AL022237.1-201ENST00000446663 358 ntBASIC6.12□□□□□ -1.43
TRIM39Q9HCM9 RSU1P2-203ENST00000448600 1582 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
TRIM39Q9HCM9 TPMTP4-201ENST00000450749 678 ntBASIC6.12□□□□□ -1.43
TRIM39Q9HCM9 RPS27AP8-201ENST00000452665 445 ntBASIC6.12□□□□□ -1.43
TRIM39Q9HCM9 AC009963.3-201ENST00000458090 486 ntBASIC6.12□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 152.1 ms