Protein–RNA interactions for Protein: Q8NEF3

CCDC112, Coiled-coil domain-containing protein 112, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC112Q8NEF3 MIR223-201ENST00000385204 110 ntBASIC5.43□□□□□ -1.54
CCDC112Q8NEF3 RNA5SP339-201ENST00000390987 122 ntBASIC5.43□□□□□ -1.54
CCDC112Q8NEF3 KLRC3-202ENST00000396439 1028 ntAPPRIS ALT2 TSL 5 BASIC5.43□□□□□ -1.54
CCDC112Q8NEF3 SPTLC1P2-201ENST00000407089 121 ntBASIC5.43□□□□□ -1.54
CCDC112Q8NEF3 GLS-204ENST00000409428 816 ntTSL 2 BASIC5.43□□□□□ -1.54
CCDC112Q8NEF3 AL359636.2-201ENST00000412262 259 ntTSL 3 BASIC5.43□□□□□ -1.54
CCDC112Q8NEF3 RPL21P108-201ENST00000413857 481 ntBASIC5.43□□□□□ -1.54
CCDC112Q8NEF3 AL136368.1-201ENST00000416249 401 ntTSL 2 BASIC5.43□□□□□ -1.54
CCDC112Q8NEF3 EI24P4-201ENST00000423683 1078 ntBASIC5.43□□□□□ -1.54
CCDC112Q8NEF3 AL390119.1-201ENST00000440329 312 ntBASIC5.43□□□□□ -1.54
CCDC112Q8NEF3 HMGB1P4-201ENST00000455362 567 ntBASIC5.43□□□□□ -1.54
CCDC112Q8NEF3 RPL35AP19-201ENST00000469425 329 ntBASIC5.43□□□□□ -1.54
CCDC112Q8NEF3 ATP6V1G1P6-201ENST00000504007 334 ntBASIC5.43□□□□□ -1.54
CCDC112Q8NEF3 STMN1P2-201ENST00000508435 439 ntBASIC5.43□□□□□ -1.54
CCDC112Q8NEF3 AC040914.1-201ENST00000518674 318 ntTSL 3 BASIC5.43□□□□□ -1.54
CCDC112Q8NEF3 AC022882.1-201ENST00000532142 501 ntBASIC5.43□□□□□ -1.54
CCDC112Q8NEF3 AC068775.2-201ENST00000539033 998 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
CCDC112Q8NEF3 HAUS8P1-201ENST00000549005 542 ntBASIC5.43□□□□□ -1.54
CCDC112Q8NEF3 RNASE9-204ENST00000553541 1136 ntAPPRIS P3 TSL 1 (best) BASIC5.43□□□□□ -1.54
CCDC112Q8NEF3 RNASE9-206ENST00000554964 1101 ntAPPRIS P3 TSL 1 (best) BASIC5.43□□□□□ -1.54
CCDC112Q8NEF3 RNASE9-208ENST00000556208 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC5.43□□□□□ -1.54
CCDC112Q8NEF3 RNASE9-210ENST00000557209 1137 ntAPPRIS ALT2 TSL 1 (best) BASIC5.43□□□□□ -1.54
CCDC112Q8NEF3 AC079414.1-201ENST00000563114 488 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
CCDC112Q8NEF3 PDZPH1P-202ENST00000602846 722 ntTSL 3 BASIC5.43□□□□□ -1.54
CCDC112Q8NEF3 SUGT1P3-202ENST00000604259 383 ntBASIC5.43□□□□□ -1.54
CCDC112Q8NEF3 AC026979.4-201ENST00000606555 645 ntBASIC5.43□□□□□ -1.54
CCDC112Q8NEF3 OR8G7P-201ENST00000616658 848 ntBASIC5.43□□□□□ -1.54
CCDC112Q8NEF3 MIR6719-201ENST00000622428 87 ntBASIC5.43□□□□□ -1.54
CCDC112Q8NEF3 AC005086.4-201ENST00000623065 213 ntBASIC5.43□□□□□ -1.54
CCDC112Q8NEF3 METTL15-211ENST00000634762 718 ntTSL 5 BASIC5.43□□□□□ -1.54
CCDC112Q8NEF3 RUVBL2-214ENST00000640699 153 ntTSL 5 BASIC5.43□□□□□ -1.54
CCDC112Q8NEF3 R3HDM1-201ENST00000264160 4648 ntAPPRIS P3 TSL 1 (best) BASIC5.43□□□□□ -1.54
CCDC112Q8NEF3 CD84-206ENST00000368054 8181 ntAPPRIS P3 TSL 1 (best) BASIC5.43□□□□□ -1.54
CCDC112Q8NEF3 PIGN-242ENST00000640145 4505 ntAPPRIS P1 TSL 5 BASIC5.43□□□□□ -1.54
CCDC112Q8NEF3 RAP1B-201ENST00000250559 13438 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
CCDC112Q8NEF3 SUPT3H-202ENST00000371459 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC5.43□□□□□ -1.54
CCDC112Q8NEF3 USP29-202ENST00000598197 3284 ntAPPRIS P1 BASIC5.42□□□□□ -1.54
CCDC112Q8NEF3 SAMSN1-201ENST00000285670 2185 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
CCDC112Q8NEF3 GRIK2-204ENST00000369137 4272 ntTSL 5 BASIC5.42□□□□□ -1.54
CCDC112Q8NEF3 APC-207ENST00000508376 10619 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
CCDC112Q8NEF3 STIL-204ENST00000396221 4558 ntAPPRIS ALT2 TSL 1 (best) BASIC5.42□□□□□ -1.54
CCDC112Q8NEF3 TAS2R8-201ENST00000240615 1243 ntAPPRIS P1 BASIC5.42□□□□□ -1.54
CCDC112Q8NEF3 OR13G1-201ENST00000359688 1046 ntAPPRIS P1 BASIC5.42□□□□□ -1.54
CCDC112Q8NEF3 SNORA66-201ENST00000384792 133 ntBASIC5.42□□□□□ -1.54
CCDC112Q8NEF3 MIR195-201ENST00000385194 87 ntBASIC5.42□□□□□ -1.54
CCDC112Q8NEF3 RNU1-149P-201ENST00000390870 161 ntBASIC5.42□□□□□ -1.54
CCDC112Q8NEF3 SNORA77-201ENST00000408716 125 ntBASIC5.42□□□□□ -1.54
CCDC112Q8NEF3 AL096678.1-201ENST00000438877 472 ntTSL 3 BASIC5.42□□□□□ -1.54
CCDC112Q8NEF3 RPL7AP28-201ENST00000464513 571 ntBASIC5.42□□□□□ -1.54
CCDC112Q8NEF3 RN7SL817P-201ENST00000480777 288 ntBASIC5.42□□□□□ -1.54
CCDC112Q8NEF3 AL133372.2-203ENST00000508469 922 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
CCDC112Q8NEF3 GTF2F2P1-201ENST00000511083 675 ntBASIC5.42□□□□□ -1.54
CCDC112Q8NEF3 Y_RNA.719-201ENST00000517156 106 ntBASIC5.42□□□□□ -1.54
CCDC112Q8NEF3 AC015522.1-201ENST00000523678 640 ntTSL 3 BASIC5.42□□□□□ -1.54
CCDC112Q8NEF3 TRDN-204ENST00000542443 1294 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
CCDC112Q8NEF3 AC144548.2-201ENST00000550231 946 ntTSL 3 BASIC5.42□□□□□ -1.54
CCDC112Q8NEF3 AC074031.1-201ENST00000550634 734 ntTSL 3 BASIC5.42□□□□□ -1.54
CCDC112Q8NEF3 AC066613.1-201ENST00000559977 1053 ntTSL 2 BASIC5.42□□□□□ -1.54
CCDC112Q8NEF3 AC109630.1-202ENST00000560552 579 ntTSL 4 BASIC5.42□□□□□ -1.54
CCDC112Q8NEF3 AC007922.3-201ENST00000581648 543 ntTSL 3 BASIC5.42□□□□□ -1.54
CCDC112Q8NEF3 AP005209.1-201ENST00000582531 928 ntTSL 5 BASIC5.42□□□□□ -1.54
CCDC112Q8NEF3 MIR7515HG-254ENST00000593269 943 ntTSL 5 BASIC5.42□□□□□ -1.54
CCDC112Q8NEF3 AL121612.2-201ENST00000612261 482 ntBASIC5.42□□□□□ -1.54
CCDC112Q8NEF3 AC018445.2-201ENST00000622987 260 ntBASIC5.42□□□□□ -1.54
CCDC112Q8NEF3 ASAH1-224ENST00000636269 685 ntTSL 3 BASIC5.42□□□□□ -1.54
CCDC112Q8NEF3 CASC19-222ENST00000641321 1173 ntBASIC5.42□□□□□ -1.54
CCDC112Q8NEF3 C4BPAP1-201ENST00000415474 1893 ntBASIC5.42□□□□□ -1.54
CCDC112Q8NEF3 CASC19-204ENST00000641001 2055 ntBASIC5.42□□□□□ -1.54
CCDC112Q8NEF3 PPP1R9A-205ENST00000424654 4058 ntTSL 5 BASIC5.42□□□□□ -1.54
CCDC112Q8NEF3 STON1-GTF2A1L-201ENST00000394751 3534 ntTSL 2 BASIC5.42□□□□□ -1.54
CCDC112Q8NEF3 PANDAR-201ENST00000629595 1506 ntBASIC5.42□□□□□ -1.54
CCDC112Q8NEF3 ZNF284-201ENST00000421176 4351 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
CCDC112Q8NEF3 MAPK10-303ENST00000641324 3959 ntBASIC5.42□□□□□ -1.54
CCDC112Q8NEF3 CNOT1-201ENST00000317147 8471 ntAPPRIS P3 TSL 1 (best) BASIC5.42□□□□□ -1.54
CCDC112Q8NEF3 SPAG5-AS1-202ENST00000424210 1551 ntTSL 2 BASIC5.42□□□□□ -1.54
CCDC112Q8NEF3 SCAF11-212ENST00000549162 3934 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
CCDC112Q8NEF3 LINC00989-201ENST00000508174 2080 ntTSL 3 BASIC5.41□□□□□ -1.54
CCDC112Q8NEF3 ELAVL4-203ENST00000371821 3349 ntTSL 5 BASIC5.41□□□□□ -1.54
CCDC112Q8NEF3 AL353625.1-202ENST00000366273 571 ntBASIC5.41□□□□□ -1.54
CCDC112Q8NEF3 ARGLU1-202ENST00000375926 821 ntAPPRIS P1 TSL 5 BASIC5.41□□□□□ -1.54
CCDC112Q8NEF3 TRAV23DV6-201ENST00000390451 409 ntAPPRIS P1 BASIC5.41□□□□□ -1.54
CCDC112Q8NEF3 ATP5HP3-201ENST00000396994 486 ntBASIC5.41□□□□□ -1.54
CCDC112Q8NEF3 HDGFP1-201ENST00000405943 252 ntBASIC5.41□□□□□ -1.54
CCDC112Q8NEF3 MRM2-202ENST00000407040 582 ntTSL 3 BASIC5.41□□□□□ -1.54
CCDC112Q8NEF3 RGS17P1-201ENST00000423358 553 ntBASIC5.41□□□□□ -1.54
CCDC112Q8NEF3 SEPT7P3-201ENST00000455017 621 ntBASIC5.41□□□□□ -1.54
CCDC112Q8NEF3 Z92846.1-201ENST00000456203 268 ntBASIC5.41□□□□□ -1.54
CCDC112Q8NEF3 AC092832.2-201ENST00000456621 389 ntTSL 2 BASIC5.41□□□□□ -1.54
CCDC112Q8NEF3 CASP12-210ENST00000494737 961 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
CCDC112Q8NEF3 RPS4XP18-201ENST00000495480 763 ntBASIC5.41□□□□□ -1.54
CCDC112Q8NEF3 OR5M14P-201ENST00000506803 618 ntBASIC5.41□□□□□ -1.54
CCDC112Q8NEF3 RPS3A-210ENST00000512690 845 ntTSL 3 BASIC5.41□□□□□ -1.54
CCDC112Q8NEF3 AC012339.2-201ENST00000523996 453 ntBASIC5.41□□□□□ -1.54
CCDC112Q8NEF3 AC002563.1-201ENST00000535109 451 ntTSL 3 BASIC5.41□□□□□ -1.54
CCDC112Q8NEF3 LINC02284-202ENST00000560924 566 ntTSL 4 BASIC5.41□□□□□ -1.54
CCDC112Q8NEF3 AC021351.1-202ENST00000561394 701 ntTSL 3 BASIC5.41□□□□□ -1.54
CCDC112Q8NEF3 ARL2BPP3-202ENST00000580773 420 ntTSL 5 BASIC5.41□□□□□ -1.54
CCDC112Q8NEF3 AC118757.1-201ENST00000586982 453 ntTSL 2 BASIC5.41□□□□□ -1.54
CCDC112Q8NEF3 AC005702.2-201ENST00000591035 481 ntAPPRIS P1 TSL 3 BASIC5.41□□□□□ -1.54
CCDC112Q8NEF3 AL356580.1-201ENST00000604129 159 ntTSL 5 BASIC5.41□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 89.1 ms