Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 AC011933.2-201ENST00000578539 2790 ntBASIC4.67□□□□□ -1.66
PDLIM3Q53GG5 ADAM24P-201ENST00000398655 2101 ntBASIC4.67□□□□□ -1.66
PDLIM3Q53GG5 XIRP2-203ENST00000409195 12675 ntTSL 5 BASIC4.67□□□□□ -1.66
PDLIM3Q53GG5 AC087473.1-201ENST00000561320 2471 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
PDLIM3Q53GG5 NBPF14-206ENST00000614999 10080 ntTSL 5 BASIC4.67□□□□□ -1.66
PDLIM3Q53GG5 PTPRO-203ENST00000442921 3030 ntAPPRIS ALT2 TSL 1 (best) BASIC4.67□□□□□ -1.66
PDLIM3Q53GG5 ANK2-202ENST00000357077 14196 ntAPPRIS P3 TSL 1 (best) BASIC4.67□□□□□ -1.66
PDLIM3Q53GG5 ZNF195-201ENST00000005082 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC4.67□□□□□ -1.66
PDLIM3Q53GG5 TCP11X1-202ENST00000622971 1372 ntBASIC4.66□□□□□ -1.66
PDLIM3Q53GG5 LINC00032-203ENST00000640247 1374 ntTSL 5 BASIC4.66□□□□□ -1.66
PDLIM3Q53GG5 OBSCN-214ENST00000636875 23907 ntTSL 5 BASIC4.66□□□□□ -1.66
PDLIM3Q53GG5 SCN11A-202ENST00000444237 5729 ntAPPRIS ALT2 TSL 5 BASIC4.66□□□□□ -1.66
PDLIM3Q53GG5 AASDH-202ENST00000451613 3182 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
PDLIM3Q53GG5 LINC00862-204ENST00000637098 1400 ntTSL 5 BASIC4.66□□□□□ -1.66
PDLIM3Q53GG5 GPALPP1-201ENST00000357537 5368 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
PDLIM3Q53GG5 ZNF681-201ENST00000402377 6497 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
PDLIM3Q53GG5 OR10G7-202ENST00000641585 3449 ntAPPRIS P1 BASIC4.66□□□□□ -1.66
PDLIM3Q53GG5 DTNA-229ENST00000598142 2509 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
PDLIM3Q53GG5 LINC02401-201ENST00000550185 3059 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
PDLIM3Q53GG5 NADK2-203ENST00000397338 3614 ntTSL 2 BASIC4.66□□□□□ -1.66
PDLIM3Q53GG5 LINC00240-204ENST00000607607 5607 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
PDLIM3Q53GG5 ARL4A-204ENST00000396664 1144 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
PDLIM3Q53GG5 AC016739.1-201ENST00000405359 345 ntBASIC4.66□□□□□ -1.66
PDLIM3Q53GG5 SCP2-205ENST00000408941 1298 ntTSL 2 BASIC4.66□□□□□ -1.66
PDLIM3Q53GG5 RPL31-206ENST00000409650 770 ntAPPRIS ALT1 TSL 2 BASIC4.66□□□□□ -1.66
PDLIM3Q53GG5 AC062031.1-201ENST00000414967 747 ntTSL 3 BASIC4.66□□□□□ -1.66
PDLIM3Q53GG5 AC008060.2-201ENST00000415333 468 ntTSL 3 BASIC4.66□□□□□ -1.66
PDLIM3Q53GG5 AC092570.3-201ENST00000420113 693 ntBASIC4.66□□□□□ -1.66
PDLIM3Q53GG5 AL590609.2-201ENST00000421430 368 ntBASIC4.66□□□□□ -1.66
PDLIM3Q53GG5 LINC02528-202ENST00000434437 535 ntTSL 2 BASIC4.66□□□□□ -1.66
PDLIM3Q53GG5 CYCSP11-201ENST00000436426 315 ntBASIC4.66□□□□□ -1.66
PDLIM3Q53GG5 HMGN1P5-201ENST00000448591 263 ntBASIC4.66□□□□□ -1.66
PDLIM3Q53GG5 AC006482.1-201ENST00000448898 273 ntTSL 3 BASIC4.66□□□□□ -1.66
PDLIM3Q53GG5 AL031668.1-201ENST00000451556 603 ntTSL 3 BASIC4.66□□□□□ -1.66
PDLIM3Q53GG5 AL356981.1-201ENST00000454879 684 ntBASIC4.66□□□□□ -1.66
PDLIM3Q53GG5 AC011225.1-201ENST00000457751 369 ntBASIC4.66□□□□□ -1.66
PDLIM3Q53GG5 AC025566.1-201ENST00000477153 490 ntTSL 3 BASIC4.66□□□□□ -1.66
PDLIM3Q53GG5 AC108733.1-201ENST00000479244 705 ntTSL 3 BASIC4.66□□□□□ -1.66
PDLIM3Q53GG5 PHC3-208ENST00000481639 1075 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
PDLIM3Q53GG5 LINC00518-204ENST00000491317 1228 ntTSL 2 BASIC4.66□□□□□ -1.66
PDLIM3Q53GG5 RN7SL808P-201ENST00000496066 299 ntBASIC4.66□□□□□ -1.66
PDLIM3Q53GG5 AC008953.1-201ENST00000497334 318 ntBASIC4.66□□□□□ -1.66
PDLIM3Q53GG5 SUMO1P1-201ENST00000497904 306 ntBASIC4.66□□□□□ -1.66
PDLIM3Q53GG5 RPS17P5-201ENST00000498293 408 ntBASIC4.66□□□□□ -1.66
PDLIM3Q53GG5 LINC02265-201ENST00000510551 957 ntTSL 2 BASIC4.66□□□□□ -1.66
PDLIM3Q53GG5 RAD21-203ENST00000517749 1003 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
PDLIM3Q53GG5 AC005740.3-201ENST00000520882 344 ntTSL 2 BASIC4.66□□□□□ -1.66
PDLIM3Q53GG5 AC068672.3-201ENST00000524017 824 ntTSL 3 BASIC4.66□□□□□ -1.66
PDLIM3Q53GG5 AC104248.1-202ENST00000524134 486 ntTSL 5 BASIC4.66□□□□□ -1.66
PDLIM3Q53GG5 AP001267.3-204ENST00000528578 423 ntTSL 3 BASIC4.66□□□□□ -1.66
PDLIM3Q53GG5 KBTBD3-204ENST00000531482 874 ntTSL 3 BASIC4.66□□□□□ -1.66
PDLIM3Q53GG5 UBTFL9-201ENST00000534504 1148 ntBASIC4.66□□□□□ -1.66
PDLIM3Q53GG5 AC018767.1-201ENST00000566236 405 ntTSL 3 BASIC4.66□□□□□ -1.66
PDLIM3Q53GG5 AC025271.2-201ENST00000566990 800 ntTSL 3 BASIC4.66□□□□□ -1.66
PDLIM3Q53GG5 AC104072.1-201ENST00000568817 668 ntBASIC4.66□□□□□ -1.66
PDLIM3Q53GG5 AC007431.2-201ENST00000577189 563 ntTSL 2 BASIC4.66□□□□□ -1.66
PDLIM3Q53GG5 RN7SL708P-201ENST00000580952 299 ntBASIC4.66□□□□□ -1.66
PDLIM3Q53GG5 AC005244.1-201ENST00000582566 339 ntBASIC4.66□□□□□ -1.66
PDLIM3Q53GG5 AC005702.2-201ENST00000591035 481 ntAPPRIS P1 TSL 3 BASIC4.66□□□□□ -1.66
PDLIM3Q53GG5 SSX4B-201ENST00000595235 1221 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
PDLIM3Q53GG5 SSX4-201ENST00000595689 1221 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
PDLIM3Q53GG5 AC239809.3-206ENST00000596091 741 ntTSL 5 BASIC4.66□□□□□ -1.66
PDLIM3Q53GG5 BNIP3P31-201ENST00000604515 566 ntBASIC4.66□□□□□ -1.66
PDLIM3Q53GG5 AP004372.1-201ENST00000604842 844 ntBASIC4.66□□□□□ -1.66
PDLIM3Q53GG5 AC073137.1-201ENST00000605636 634 ntBASIC4.66□□□□□ -1.66
PDLIM3Q53GG5 AL445222.1-201ENST00000607259 628 ntBASIC4.66□□□□□ -1.66
PDLIM3Q53GG5 AL121612.2-201ENST00000612261 482 ntBASIC4.66□□□□□ -1.66
PDLIM3Q53GG5 AL139407.1-201ENST00000613826 1175 ntBASIC4.66□□□□□ -1.66
PDLIM3Q53GG5 AL139099.4-201ENST00000614802 114 ntBASIC4.66□□□□□ -1.66
PDLIM3Q53GG5 AL137789.1-204ENST00000623503 666 ntTSL 5 BASIC4.66□□□□□ -1.66
PDLIM3Q53GG5 RUVBL2-214ENST00000640699 153 ntTSL 5 BASIC4.66□□□□□ -1.66
PDLIM3Q53GG5 OR8B2-202ENST00000641451 1056 ntAPPRIS P1 BASIC4.66□□□□□ -1.66
PDLIM3Q53GG5 BX005019.1-201ENST00000561881 1810 ntBASIC4.66□□□□□ -1.66
PDLIM3Q53GG5 AC131971.1-201ENST00000332881 1482 ntBASIC4.66□□□□□ -1.66
PDLIM3Q53GG5 CCDC62-205ENST00000537566 3537 ntAPPRIS ALT2 TSL 2 BASIC4.66□□□□□ -1.66
PDLIM3Q53GG5 ASB14-202ENST00000487349 3179 ntAPPRIS P2 TSL 1 (best) BASIC4.66□□□□□ -1.66
PDLIM3Q53GG5 CASC19-284ENST00000642142 1868 ntBASIC4.66□□□□□ -1.66
PDLIM3Q53GG5 TMEM99-201ENST00000301665 2058 ntAPPRIS P2 TSL 2 BASIC4.66□□□□□ -1.66
PDLIM3Q53GG5 C1orf27-201ENST00000287859 3792 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
PDLIM3Q53GG5 ARHGEF3-203ENST00000413728 3992 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
PDLIM3Q53GG5 OR2AP1-202ENST00000641114 1548 ntAPPRIS P1 BASIC4.66□□□□□ -1.66
PDLIM3Q53GG5 RALGAPB-202ENST00000397040 8435 ntAPPRIS P3 TSL 1 (best) BASIC4.66□□□□□ -1.66
PDLIM3Q53GG5 CYP3A43-204ENST00000354829 1709 ntAPPRIS ALT1 TSL 1 (best) BASIC4.66□□□□□ -1.66
PDLIM3Q53GG5 ZNF227-208ENST00000589005 2943 ntTSL 2 BASIC4.66□□□□□ -1.66
PDLIM3Q53GG5 APAF1-205ENST00000547045 3744 ntAPPRIS ALT1 TSL 1 (best) BASIC4.66□□□□□ -1.66
PDLIM3Q53GG5 RASSF8-201ENST00000282884 1994 ntAPPRIS P1 TSL 2 BASIC4.65□□□□□ -1.66
PDLIM3Q53GG5 TEX11-201ENST00000344304 2977 ntAPPRIS P3 TSL 5 BASIC4.65□□□□□ -1.66
PDLIM3Q53GG5 RAPGEF4-215ENST00000540783 3974 ntTSL 2 BASIC4.65□□□□□ -1.66
PDLIM3Q53GG5 MOSPD2-201ENST00000380492 4163 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.66
PDLIM3Q53GG5 TNFSF4-202ENST00000367718 3429 ntTSL 1 (best) BASIC4.65□□□□□ -1.66
PDLIM3Q53GG5 MYBPC1-216ENST00000550270 3426 ntAPPRIS ALT2 TSL 5 BASIC4.65□□□□□ -1.66
PDLIM3Q53GG5 PLEKHG7-201ENST00000344636 3868 ntTSL 5 BASIC4.65□□□□□ -1.66
PDLIM3Q53GG5 NUP107-202ENST00000378905 2859 ntTSL 5 BASIC4.65□□□□□ -1.66
PDLIM3Q53GG5 MKKS-202ENST00000399054 2663 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.66
PDLIM3Q53GG5 ANO6-205ENST00000441606 5955 ntAPPRIS ALT2 TSL 1 (best) BASIC4.65□□□□□ -1.66
PDLIM3Q53GG5 MIR4500HG-201ENST00000436290 1675 ntTSL 1 (best) BASIC4.65□□□□□ -1.66
PDLIM3Q53GG5 RASSF6-204ENST00000395777 2735 ntTSL 1 (best) BASIC4.65□□□□□ -1.66
PDLIM3Q53GG5 TCP1P3-201ENST00000414406 1498 ntBASIC4.65□□□□□ -1.66
PDLIM3Q53GG5 SELENOWP1-201ENST00000322792 252 ntBASIC4.65□□□□□ -1.67
PDLIM3Q53GG5 RNA5SP46-201ENST00000362370 120 ntBASIC4.65□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 85.9 ms