Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 AC010255.1-201ENST00000504829 731 ntTSL 5 BASIC6.17□□□□□ -1.42
COL18A1P39060 AC092440.1-201ENST00000512563 571 ntTSL 4 BASIC6.17□□□□□ -1.42
COL18A1P39060 ARL6IP1P1-201ENST00000545836 610 ntBASIC6.17□□□□□ -1.42
COL18A1P39060 PDCD6IPP1-202ENST00000622242 1064 ntBASIC6.17□□□□□ -1.42
COL18A1P39060 AC104461.1-201ENST00000637430 817 ntTSL 5 BASIC6.17□□□□□ -1.42
COL18A1P39060 LEUTX-202ENST00000638280 667 ntAPPRIS P1 TSL 3 BASIC6.17□□□□□ -1.42
COL18A1P39060 PUM2-201ENST00000319801 6002 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
COL18A1P39060 SMAD5-212ENST00000545620 6937 ntAPPRIS P1 TSL 5 BASIC6.17□□□□□ -1.42
COL18A1P39060 POLQ-204ENST00000621776 9055 ntTSL 5 BASIC6.17□□□□□ -1.42
COL18A1P39060 KIAA1109-201ENST00000264501 15896 ntAPPRIS P1 TSL 5 BASIC6.17□□□□□ -1.42
COL18A1P39060 UNC79-202ENST00000393151 7908 ntTSL 5 BASIC6.17□□□□□ -1.42
COL18A1P39060 MCTP2-201ENST00000357742 7555 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
COL18A1P39060 KLHL4-201ENST00000373114 2445 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
COL18A1P39060 CDH13-209ENST00000567109 8042 ntAPPRIS ALT2 TSL 1 (best) BASIC6.17□□□□□ -1.42
COL18A1P39060 NOS1-201ENST00000317775 12158 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
COL18A1P39060 DGKB-201ENST00000399322 6684 ntAPPRIS P2 TSL 5 BASIC6.17□□□□□ -1.42
COL18A1P39060 PYHIN1-203ENST00000368140 2083 ntAPPRIS P4 TSL 1 (best) BASIC6.17□□□□□ -1.42
COL18A1P39060 SCGB2A2-202ENST00000525380 1305 ntTSL 2 BASIC6.17□□□□□ -1.42
COL18A1P39060 OR8H2-201ENST00000313503 3088 ntAPPRIS P2 BASIC6.17□□□□□ -1.42
COL18A1P39060 MEIS1-209ENST00000488550 5111 ntAPPRIS ALT1 TSL 1 (best) BASIC6.17□□□□□ -1.42
COL18A1P39060 SNORA70C-201ENST00000384538 135 ntBASIC6.16□□□□□ -1.42
COL18A1P39060 ST7-204ENST00000393444 2113 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
COL18A1P39060 AP000580.1-201ENST00000404439 358 ntBASIC6.16□□□□□ -1.42
COL18A1P39060 AC011933.1-201ENST00000413334 321 ntBASIC6.16□□□□□ -1.42
COL18A1P39060 LINC01014-203ENST00000455307 548 ntTSL 2 BASIC6.16□□□□□ -1.42
COL18A1P39060 EIF4A2P4-201ENST00000458691 1196 ntBASIC6.16□□□□□ -1.42
COL18A1P39060 AC116533.1-201ENST00000459748 321 ntBASIC6.16□□□□□ -1.42
COL18A1P39060 F11-205ENST00000492972 1204 ntTSL 2 BASIC6.16□□□□□ -1.42
COL18A1P39060 AC016598.2-201ENST00000514942 525 ntTSL 5 BASIC6.16□□□□□ -1.42
COL18A1P39060 AC007342.4-202ENST00000565189 721 ntTSL 3 BASIC6.16□□□□□ -1.42
COL18A1P39060 OR7A19P-201ENST00000608051 733 ntBASIC6.16□□□□□ -1.42
COL18A1P39060 AC021422.1-201ENST00000621212 473 ntBASIC6.16□□□□□ -1.42
COL18A1P39060 AC011815.3-201ENST00000624194 473 ntBASIC6.16□□□□□ -1.42
COL18A1P39060 AP003497.2-201ENST00000624220 967 ntBASIC6.16□□□□□ -1.42
COL18A1P39060 ITSN1-206ENST00000381318 17015 ntAPPRIS P3 TSL 1 (best) BASIC6.16□□□□□ -1.42
COL18A1P39060 CACNB4-273ENST00000638091 4061 ntTSL 5 BASIC6.16□□□□□ -1.42
COL18A1P39060 MKL2-201ENST00000318282 8608 ntAPPRIS P3 TSL 5 BASIC6.16□□□□□ -1.42
COL18A1P39060 AQP4-201ENST00000383168 5274 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
COL18A1P39060 OR2A7-202ENST00000641841 2062 ntAPPRIS P1 BASIC6.16□□□□□ -1.42
COL18A1P39060 AL022344.1-201ENST00000439913 3965 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
COL18A1P39060 LGALSL-202ENST00000409537 3298 ntTSL 5 BASIC6.16□□□□□ -1.42
COL18A1P39060 ZRANB3-202ENST00000401392 6820 ntAPPRIS ALT2 TSL 1 (best) BASIC6.16□□□□□ -1.42
COL18A1P39060 CLCN3-211ENST00000613795 5874 ntTSL 5 BASIC6.16□□□□□ -1.42
COL18A1P39060 LCMT1-AS2-202ENST00000565214 5666 ntBASIC6.16□□□□□ -1.42
COL18A1P39060 AP1G1-207ENST00000564155 2723 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
COL18A1P39060 C6orf89-204ENST00000480824 6861 ntAPPRIS ALT2 TSL 1 (best) BASIC6.16□□□□□ -1.42
COL18A1P39060 AC089984.1-201ENST00000552780 1431 ntTSL 3 BASIC6.16□□□□□ -1.42
COL18A1P39060 PPHLN1-225ENST00000619544 1449 ntTSL 5 BASIC6.16□□□□□ -1.42
COL18A1P39060 KCNT2-206ENST00000609185 3622 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
COL18A1P39060 ALG11-202ENST00000521508 2558 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
COL18A1P39060 RNA5SP366-201ENST00000365454 123 ntBASIC6.16□□□□□ -1.42
COL18A1P39060 AL590762.2-201ENST00000395798 571 ntBASIC6.16□□□□□ -1.42
COL18A1P39060 RPL17P50-201ENST00000396131 546 ntBASIC6.16□□□□□ -1.42
COL18A1P39060 NDUFA5P1-201ENST00000433858 341 ntBASIC6.16□□□□□ -1.42
COL18A1P39060 SNAP25-AS1-205ENST00000453544 368 ntTSL 5 BASIC6.16□□□□□ -1.42
COL18A1P39060 AC108475.1-201ENST00000507880 950 ntBASIC6.16□□□□□ -1.42
COL18A1P39060 AC068992.1-201ENST00000521411 543 ntTSL 5 BASIC6.16□□□□□ -1.42
COL18A1P39060 AC055874.1-201ENST00000561458 479 ntTSL 2 BASIC6.16□□□□□ -1.42
COL18A1P39060 MIR99AHG-211ENST00000602323 475 ntTSL 5 BASIC6.16□□□□□ -1.42
COL18A1P39060 AC090181.2-201ENST00000602975 672 ntBASIC6.16□□□□□ -1.42
COL18A1P39060 AL352984.2-202ENST00000613699 155 ntBASIC6.16□□□□□ -1.42
COL18A1P39060 MDM4-205ENST00000391947 10008 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
COL18A1P39060 VNN3-203ENST00000392393 1603 ntTSL 1 (best) BASIC6.15□□□□□ -1.42
COL18A1P39060 AL450345.1-202ENST00000605741 3881 ntBASIC6.15□□□□□ -1.42
COL18A1P39060 SETDB2-205ENST00000611815 5313 ntAPPRIS ALT2 TSL 5 BASIC6.15□□□□□ -1.42
COL18A1P39060 ZBTB38-201ENST00000321464 3588 ntAPPRIS P1 BASIC6.15□□□□□ -1.42
COL18A1P39060 IKZF2-210ENST00000451136 9344 ntTSL 5 BASIC6.15□□□□□ -1.42
COL18A1P39060 WDHD1-201ENST00000360586 5996 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.42
COL18A1P39060 BRWD1-203ENST00000342449 12929 ntTSL 1 (best) BASIC6.15□□□□□ -1.42
COL18A1P39060 GPALPP1-201ENST00000357537 5368 ntTSL 1 (best) BASIC6.15□□□□□ -1.42
COL18A1P39060 R3HDM1-201ENST00000264160 4648 ntAPPRIS P3 TSL 1 (best) BASIC6.15□□□□□ -1.42
COL18A1P39060 MDM4-203ENST00000367182 10073 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.42
COL18A1P39060 PIK3C3-217ENST00000639914 2722 ntTSL 5 BASIC6.15□□□□□ -1.42
COL18A1P39060 ORMDL1-201ENST00000325795 2692 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.43
COL18A1P39060 AL121657.1-201ENST00000327215 531 ntBASIC6.15□□□□□ -1.43
COL18A1P39060 OR8G1-201ENST00000341493 936 ntAPPRIS P1 BASIC6.15□□□□□ -1.43
COL18A1P39060 GTSF1L-202ENST00000373005 459 ntAPPRIS ALT2 TSL 3 BASIC6.15□□□□□ -1.43
COL18A1P39060 DEC1-201ENST00000374016 1251 ntAPPRIS P2 TSL 1 (best) BASIC6.15□□□□□ -1.43
COL18A1P39060 U3.35-201ENST00000408405 208 ntBASIC6.15□□□□□ -1.43
COL18A1P39060 OR8G2P-201ENST00000412796 908 ntBASIC6.15□□□□□ -1.43
COL18A1P39060 AL354896.1-201ENST00000430214 561 ntTSL 4 BASIC6.15□□□□□ -1.43
COL18A1P39060 AL023693.1-201ENST00000434255 216 ntTSL 5 BASIC6.15□□□□□ -1.43
COL18A1P39060 LINC01423-202ENST00000436845 423 ntTSL 2 BASIC6.15□□□□□ -1.43
COL18A1P39060 SLIT2-IT1-201ENST00000515882 601 ntTSL 1 (best) BASIC6.15□□□□□ -1.43
COL18A1P39060 TBCA-207ENST00000520039 157 ntTSL 3 BASIC6.15□□□□□ -1.43
COL18A1P39060 RN7SL176P-201ENST00000580352 264 ntBASIC6.15□□□□□ -1.43
COL18A1P39060 ARID5B-201ENST00000279873 7891 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.43
COL18A1P39060 AMOT-201ENST00000304758 6888 ntAPPRIS P3 TSL 1 (best) BASIC6.15□□□□□ -1.43
COL18A1P39060 MED23-203ENST00000368058 4576 ntTSL 5 BASIC6.15□□□□□ -1.43
COL18A1P39060 MGAM-208ENST00000549489 6525 ntTSL 1 (best) BASIC6.15□□□□□ -1.43
COL18A1P39060 LINC00919-201ENST00000561513 1658 ntTSL 2 BASIC6.15□□□□□ -1.43
COL18A1P39060 RNF150-202ENST00000420921 3673 ntTSL 2 BASIC6.15□□□□□ -1.43
COL18A1P39060 FLRT3-201ENST00000341420 3971 ntAPPRIS P1 TSL 2 BASIC6.14□□□□□ -1.43
COL18A1P39060 ERBB4-202ENST00000342788 12136 ntAPPRIS P3 TSL 1 (best) BASIC6.14□□□□□ -1.43
COL18A1P39060 NLN-202ENST00000502464 8354 ntTSL 5 BASIC6.14□□□□□ -1.43
COL18A1P39060 DNAAF4-CCPG1-201ENST00000565113 4589 ntTSL 2 BASIC6.14□□□□□ -1.43
COL18A1P39060 CASKP1-201ENST00000412870 582 ntBASIC6.14□□□□□ -1.43
COL18A1P39060 AC007557.4-201ENST00000421907 430 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
COL18A1P39060 LINC01850-201ENST00000429916 357 ntTSL 3 BASIC6.14□□□□□ -1.43
COL18A1P39060 BMS1P19-201ENST00000433925 393 ntBASIC6.14□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 87.9 ms