Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 APOOL-202ENST00000613473 6445 ntAPPRIS ALT1 TSL 5 BASIC5.82□□□□□ -1.48
BRCA1P38398 SLC9A6-212ENST00000637195 4858 ntTSL 5 BASIC5.82□□□□□ -1.48
BRCA1P38398 CHD2-208ENST00000626874 7764 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
BRCA1P38398 NLRP11-202ENST00000589824 3231 ntAPPRIS ALT2 TSL 5 BASIC5.81□□□□□ -1.48
BRCA1P38398 AC005005.4-201ENST00000623789 16698 ntBASIC5.81□□□□□ -1.48
BRCA1P38398 OR8G1-201ENST00000341493 936 ntAPPRIS P1 BASIC5.81□□□□□ -1.48
BRCA1P38398 RNA5SP366-201ENST00000365454 123 ntBASIC5.81□□□□□ -1.48
BRCA1P38398 OR8G2P-201ENST00000412796 908 ntBASIC5.81□□□□□ -1.48
BRCA1P38398 AC104389.1-201ENST00000418080 522 ntTSL 3 BASIC5.81□□□□□ -1.48
BRCA1P38398 RPL6P21-201ENST00000418672 846 ntBASIC5.81□□□□□ -1.48
BRCA1P38398 AL450023.3-201ENST00000440592 271 ntBASIC5.81□□□□□ -1.48
BRCA1P38398 NUTF2P3-201ENST00000448540 384 ntBASIC5.81□□□□□ -1.48
BRCA1P38398 AL158825.2-201ENST00000455336 670 ntTSL 5 BASIC5.81□□□□□ -1.48
BRCA1P38398 AL512303.1-201ENST00000458693 465 ntTSL 3 BASIC5.81□□□□□ -1.48
BRCA1P38398 SEPT7P9-201ENST00000475691 413 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
BRCA1P38398 AC041039.1-201ENST00000485656 536 ntBASIC5.81□□□□□ -1.48
BRCA1P38398 LINC02149-201ENST00000511443 558 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
BRCA1P38398 SNORA31.9-201ENST00000516429 84 ntBASIC5.81□□□□□ -1.48
BRCA1P38398 OR8A2P-201ENST00000528631 952 ntBASIC5.81□□□□□ -1.48
BRCA1P38398 LINC01905-206ENST00000593180 524 ntTSL 2 BASIC5.81□□□□□ -1.48
BRCA1P38398 AL161756.2-201ENST00000604597 246 ntBASIC5.81□□□□□ -1.48
BRCA1P38398 AL024498.1-201ENST00000606522 1100 ntTSL 3 BASIC5.81□□□□□ -1.48
BRCA1P38398 PIK3CB-214ENST00000544716 3181 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
BRCA1P38398 ATF7IP-201ENST00000261168 8878 ntAPPRIS P3 TSL 5 BASIC5.81□□□□□ -1.48
BRCA1P38398 PRR14L-201ENST00000327423 10826 ntAPPRIS P2 TSL 5 BASIC5.81□□□□□ -1.48
BRCA1P38398 TAX1BP1-202ENST00000396319 2892 ntAPPRIS P3 TSL 1 (best) BASIC5.81□□□□□ -1.48
BRCA1P38398 KIAA0408-204ENST00000483725 3284 ntAPPRIS P2 TSL 5 BASIC5.81□□□□□ -1.48
BRCA1P38398 CACNA1E-202ENST00000358338 14700 ntAPPRIS ALT2 TSL 5 BASIC5.81□□□□□ -1.48
BRCA1P38398 ZNF85-201ENST00000300540 1531 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
BRCA1P38398 UGT2B26P-201ENST00000508672 1613 ntBASIC5.81□□□□□ -1.48
BRCA1P38398 AC008695.1-201ENST00000514667 6393 ntAPPRIS P1 TSL 2 BASIC5.81□□□□□ -1.48
BRCA1P38398 ZC3H12C-201ENST00000278590 8807 ntTSL 2 BASIC5.81□□□□□ -1.48
BRCA1P38398 KCNJ10-205ENST00000638728 4351 ntAPPRIS P1 TSL 5 BASIC5.81□□□□□ -1.48
BRCA1P38398 AL359955.1-201ENST00000455242 3275 ntBASIC5.81□□□□□ -1.48
BRCA1P38398 DCC-202ENST00000412726 9525 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
BRCA1P38398 TTC3-AS1-201ENST00000424733 1097 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
BRCA1P38398 MTUS2-AS2-202ENST00000434779 720 ntTSL 3 BASIC5.81□□□□□ -1.48
BRCA1P38398 AC046176.1-201ENST00000435260 1170 ntBASIC5.81□□□□□ -1.48
BRCA1P38398 RN7SL98P-201ENST00000462271 300 ntBASIC5.81□□□□□ -1.48
BRCA1P38398 RNU6-709P-201ENST00000517257 104 ntBASIC5.81□□□□□ -1.48
BRCA1P38398 AC090103.1-201ENST00000520386 485 ntTSL 2 BASIC5.81□□□□□ -1.48
BRCA1P38398 AF117829.1-202ENST00000524166 836 ntTSL 3 BASIC5.81□□□□□ -1.48
BRCA1P38398 AC125603.1-201ENST00000552718 366 ntTSL 3 BASIC5.81□□□□□ -1.48
BRCA1P38398 NDUFB4P11-201ENST00000560510 395 ntBASIC5.81□□□□□ -1.48
BRCA1P38398 RN7SL652P-201ENST00000577769 300 ntBASIC5.81□□□□□ -1.48
BRCA1P38398 MIR4286-201ENST00000580651 93 ntBASIC5.81□□□□□ -1.48
BRCA1P38398 AC099676.1-201ENST00000608886 657 ntBASIC5.81□□□□□ -1.48
BRCA1P38398 AC079298.3-201ENST00000624941 977 ntTSL 3 BASIC5.81□□□□□ -1.48
BRCA1P38398 MFSD8-242ENST00000641690 4199 ntBASIC5.81□□□□□ -1.48
BRCA1P38398 TTC41P-205ENST00000551270 3963 ntBASIC5.81□□□□□ -1.48
BRCA1P38398 ZNF137P-201ENST00000456718 1920 ntBASIC5.81□□□□□ -1.48
BRCA1P38398 ZNF585A-201ENST00000292841 8618 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
BRCA1P38398 AC099506.1-201ENST00000567359 4037 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
BRCA1P38398 LUZP1-203ENST00000418342 8421 ntAPPRIS P1 TSL 5 BASIC5.81□□□□□ -1.48
BRCA1P38398 AC009643.2-201ENST00000603543 1448 ntBASIC5.8□□□□□ -1.48
BRCA1P38398 MIR99AHG-219ENST00000619222 3476 ntTSL 2 BASIC5.8□□□□□ -1.48
BRCA1P38398 TOX-201ENST00000361421 4131 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
BRCA1P38398 POLQ-204ENST00000621776 9055 ntTSL 5 BASIC5.8□□□□□ -1.48
BRCA1P38398 COLCA1-205ENST00000620864 8098 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
BRCA1P38398 ZNF836-204ENST00000597252 3209 ntAPPRIS P2 TSL 2 BASIC5.8□□□□□ -1.48
BRCA1P38398 ADGRG2-201ENST00000340581 3594 ntTSL 2 BASIC5.8□□□□□ -1.48
BRCA1P38398 MYBPC1-207ENST00000545503 3569 ntAPPRIS ALT2 TSL 1 (best) BASIC5.8□□□□□ -1.48
BRCA1P38398 CCL7-203ENST00000394630 687 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
BRCA1P38398 SNORA11C-201ENST00000408532 129 ntBASIC5.8□□□□□ -1.48
BRCA1P38398 TMSB10P2-201ENST00000416049 131 ntBASIC5.8□□□□□ -1.48
BRCA1P38398 VN1R34P-201ENST00000447387 883 ntBASIC5.8□□□□□ -1.48
BRCA1P38398 AC105137.1-201ENST00000484355 562 ntBASIC5.8□□□□□ -1.48
BRCA1P38398 LINC00535-203ENST00000520096 790 ntTSL 3 BASIC5.8□□□□□ -1.48
BRCA1P38398 RAD51AP1-213ENST00000544927 787 ntTSL 4 BASIC5.8□□□□□ -1.48
BRCA1P38398 AC021351.1-201ENST00000560886 652 ntTSL 5 BASIC5.8□□□□□ -1.48
BRCA1P38398 AC010401.3-201ENST00000576600 582 ntTSL 4 BASIC5.8□□□□□ -1.48
BRCA1P38398 AC039056.2-201ENST00000622261 511 ntBASIC5.8□□□□□ -1.48
BRCA1P38398 AC243960.7-201ENST00000623532 707 ntBASIC5.8□□□□□ -1.48
BRCA1P38398 STON1-202ENST00000406226 5614 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
BRCA1P38398 IKZF2-210ENST00000451136 9344 ntTSL 5 BASIC5.8□□□□□ -1.48
BRCA1P38398 BDNF-212ENST00000525528 4766 ntAPPRIS P1 BASIC5.8□□□□□ -1.48
BRCA1P38398 PIK3CB-201ENST00000289153 5919 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
BRCA1P38398 MR1-209ENST00000617803 7584 ntTSL 5 BASIC5.8□□□□□ -1.48
BRCA1P38398 CD86-203ENST00000393627 1405 ntAPPRIS ALT2 TSL 1 (best) BASIC5.8□□□□□ -1.48
BRCA1P38398 OTUD4-202ENST00000454497 7069 ntTSL 2 BASIC5.8□□□□□ -1.48
BRCA1P38398 EED-203ENST00000351625 1696 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
BRCA1P38398 POLR1A-201ENST00000263857 12749 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
BRCA1P38398 AP002518.1-201ENST00000534904 3837 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
BRCA1P38398 RNF182-207ENST00000537663 3382 ntAPPRIS P1 TSL 4 BASIC5.8□□□□□ -1.48
BRCA1P38398 AC010531.4-202ENST00000569872 1718 ntTSL 2 BASIC5.8□□□□□ -1.48
BRCA1P38398 NDRG3-202ENST00000359675 2917 ntAPPRIS ALT1 TSL 1 (best) BASIC5.79□□□□□ -1.48
BRCA1P38398 ERVFRD-3-201ENST00000578561 1617 ntBASIC5.79□□□□□ -1.48
BRCA1P38398 OR12D3-201ENST00000396806 1869 ntAPPRIS P1 BASIC5.79□□□□□ -1.48
BRCA1P38398 SPRR2C-201ENST00000290702 219 ntBASIC5.79□□□□□ -1.48
BRCA1P38398 RNU1-130P-201ENST00000363930 160 ntBASIC5.79□□□□□ -1.48
BRCA1P38398 TRAV25-201ENST00000390454 403 ntAPPRIS P1 BASIC5.79□□□□□ -1.48
BRCA1P38398 FTH1P16-201ENST00000435241 552 ntBASIC5.79□□□□□ -1.48
BRCA1P38398 AL358232.1-201ENST00000448030 501 ntBASIC5.79□□□□□ -1.48
BRCA1P38398 PCBP1-AS1-237ENST00000452431 1194 ntTSL 4 BASIC5.79□□□□□ -1.48
BRCA1P38398 SPTY2D1-AS1-203ENST00000542172 331 ntAPPRIS ALT2 TSL 1 (best) BASIC5.79□□□□□ -1.48
BRCA1P38398 DPPA3P2-201ENST00000553589 478 ntBASIC5.79□□□□□ -1.48
BRCA1P38398 AC015726.1-202ENST00000602532 475 ntTSL 5 BASIC5.79□□□□□ -1.48
BRCA1P38398 APAF1-205ENST00000547045 3744 ntAPPRIS ALT1 TSL 1 (best) BASIC5.79□□□□□ -1.48
BRCA1P38398 SLF1-201ENST00000265140 5905 ntAPPRIS P1 TSL 2 BASIC5.79□□□□□ -1.48
BRCA1P38398 TLR2-201ENST00000260010 4200 ntAPPRIS P1 BASIC5.79□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 75.9 ms