Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 IFIT2-202ENST00000611722 3038 ntAPPRIS ALT2 TSL 5 BASIC7.85□□□□□ -1.15
VPS9D1Q9Y2B5 SERPINI2-201ENST00000264677 1678 ntAPPRIS P1 TSL 1 (best) BASIC7.85□□□□□ -1.15
VPS9D1Q9Y2B5 CLEC1A-204ENST00000457018 1686 ntAPPRIS ALT2 TSL 2 BASIC7.85□□□□□ -1.15
VPS9D1Q9Y2B5 PUS7L-203ENST00000431332 1873 ntTSL 2 BASIC7.85□□□□□ -1.15
VPS9D1Q9Y2B5 TTC41P-204ENST00000548897 2998 ntTSL 5 BASIC7.85□□□□□ -1.15
VPS9D1Q9Y2B5 ZNF10-201ENST00000248211 4441 ntAPPRIS P1 TSL 1 (best) BASIC7.85□□□□□ -1.15
VPS9D1Q9Y2B5 AKAP7-202ENST00000342266 2461 ntTSL 1 (best) BASIC7.85□□□□□ -1.15
VPS9D1Q9Y2B5 GPNMB-201ENST00000258733 2862 ntAPPRIS P3 TSL 1 (best) BASIC7.85□□□□□ -1.15
VPS9D1Q9Y2B5 FBXW2-205ENST00000608872 9138 ntAPPRIS P1 TSL 1 (best) BASIC7.84□□□□□ -1.15
VPS9D1Q9Y2B5 PUS3-203ENST00000530811 1792 ntAPPRIS P1 TSL 1 (best) BASIC7.84□□□□□ -1.15
VPS9D1Q9Y2B5 CARF-212ENST00000434998 1955 ntTSL 1 (best) BASIC7.84□□□□□ -1.15
VPS9D1Q9Y2B5 AC233263.6-201ENST00000631132 1963 ntBASIC7.84□□□□□ -1.15
VPS9D1Q9Y2B5 PHLDB2-201ENST00000393923 5673 ntTSL 2 BASIC7.84□□□□□ -1.15
VPS9D1Q9Y2B5 IL1RL1-203ENST00000404917 3571 ntTSL 2 BASIC7.84□□□□□ -1.15
VPS9D1Q9Y2B5 NOS2P3-202ENST00000458685 3328 ntTSL 1 (best) BASIC7.84□□□□□ -1.15
VPS9D1Q9Y2B5 ABLIM3-201ENST00000309868 4326 ntAPPRIS P1 TSL 1 (best) BASIC7.84□□□□□ -1.15
VPS9D1Q9Y2B5 PROM1-206ENST00000505450 4349 ntAPPRIS ALT2 TSL 1 (best) BASIC7.84□□□□□ -1.15
VPS9D1Q9Y2B5 PDE4B-206ENST00000423207 4546 ntAPPRIS P1 TSL 1 (best) BASIC7.84□□□□□ -1.15
VPS9D1Q9Y2B5 MBTPS2-201ENST00000365779 4457 ntTSL 1 (best) BASIC7.84□□□□□ -1.15
VPS9D1Q9Y2B5 NUP214-208ENST00000483497 3275 ntTSL 2 BASIC7.84□□□□□ -1.15
VPS9D1Q9Y2B5 AL109811.1-201ENST00000452378 2682 ntTSL 2 BASIC7.84□□□□□ -1.15
VPS9D1Q9Y2B5 MYLK4-201ENST00000274643 5806 ntAPPRIS P1 TSL 1 (best) BASIC7.84□□□□□ -1.15
VPS9D1Q9Y2B5 IL6ST-212ENST00000522633 1878 ntTSL 1 (best) BASIC7.84□□□□□ -1.15
VPS9D1Q9Y2B5 SGK1-223ENST00000528577 1850 ntTSL 1 (best) BASIC7.84□□□□□ -1.15
VPS9D1Q9Y2B5 AC093775.1-201ENST00000624154 1868 ntBASIC7.84□□□□□ -1.15
VPS9D1Q9Y2B5 MAPK9-213ENST00000539014 1668 ntTSL 1 (best) BASIC7.84□□□□□ -1.15
VPS9D1Q9Y2B5 ACTR3BP5-201ENST00000448440 1479 ntBASIC7.84□□□□□ -1.15
VPS9D1Q9Y2B5 OR5A1-201ENST00000302030 1051 ntAPPRIS P1 BASIC7.84□□□□□ -1.15
VPS9D1Q9Y2B5 CTH-201ENST00000346806 1196 ntTSL 1 (best) BASIC7.84□□□□□ -1.15
VPS9D1Q9Y2B5 Metazoa_SRP.2-201ENST00000359385 269 ntBASIC7.84□□□□□ -1.15
VPS9D1Q9Y2B5 RNU1-47P-201ENST00000362966 163 ntBASIC7.84□□□□□ -1.15
VPS9D1Q9Y2B5 Y_RNA.81-201ENST00000362997 102 ntBASIC7.84□□□□□ -1.15
VPS9D1Q9Y2B5 RNU6-289P-201ENST00000364093 107 ntBASIC7.84□□□□□ -1.15
VPS9D1Q9Y2B5 RNU6-450P-201ENST00000364654 107 ntBASIC7.84□□□□□ -1.15
VPS9D1Q9Y2B5 OR2AK2-201ENST00000366480 1154 ntAPPRIS ALT2 BASIC7.84□□□□□ -1.15
VPS9D1Q9Y2B5 AL450124.1-201ENST00000376401 353 ntBASIC7.84□□□□□ -1.15
VPS9D1Q9Y2B5 RNU6-730P-201ENST00000383954 104 ntBASIC7.84□□□□□ -1.15
VPS9D1Q9Y2B5 Y_RNA.477-201ENST00000384352 108 ntBASIC7.84□□□□□ -1.15
VPS9D1Q9Y2B5 MIR506-201ENST00000384998 124 ntBASIC7.84□□□□□ -1.15
VPS9D1Q9Y2B5 MIR654-201ENST00000385199 81 ntBASIC7.84□□□□□ -1.15
VPS9D1Q9Y2B5 RNA5SP185-201ENST00000390963 114 ntBASIC7.84□□□□□ -1.15
VPS9D1Q9Y2B5 AL034403.1-201ENST00000399414 885 ntBASIC7.84□□□□□ -1.15
VPS9D1Q9Y2B5 C1GALT1-202ENST00000402468 930 ntTSL 1 (best) BASIC7.84□□□□□ -1.15
VPS9D1Q9Y2B5 AL357752.1-201ENST00000412817 349 ntBASIC7.84□□□□□ -1.15
VPS9D1Q9Y2B5 AC099654.1-202ENST00000415836 564 ntTSL 4 BASIC7.84□□□□□ -1.15
VPS9D1Q9Y2B5 RPS6KA2-IT1-201ENST00000416770 579 ntTSL 3 BASIC7.84□□□□□ -1.15
VPS9D1Q9Y2B5 AL049712.1-201ENST00000418739 872 ntTSL 3 BASIC7.84□□□□□ -1.15
VPS9D1Q9Y2B5 EIF4EP1-201ENST00000422311 642 ntBASIC7.84□□□□□ -1.15
VPS9D1Q9Y2B5 SKA2P1-201ENST00000425592 390 ntBASIC7.84□□□□□ -1.15
VPS9D1Q9Y2B5 AC073283.2-202ENST00000426892 591 ntTSL 4 BASIC7.84□□□□□ -1.15
VPS9D1Q9Y2B5 PRPS1P2-201ENST00000430496 937 ntBASIC7.84□□□□□ -1.15
VPS9D1Q9Y2B5 AC119618.1-201ENST00000434191 222 ntBASIC7.84□□□□□ -1.15
VPS9D1Q9Y2B5 RSU1P2-202ENST00000437884 485 ntBASIC7.84□□□□□ -1.15
VPS9D1Q9Y2B5 RPL7P59-201ENST00000447700 943 ntBASIC7.84□□□□□ -1.15
VPS9D1Q9Y2B5 Z68323.1-201ENST00000450365 519 ntTSL 3 BASIC7.84□□□□□ -1.15
VPS9D1Q9Y2B5 RN7SL740P-201ENST00000467060 344 ntBASIC7.84□□□□□ -1.15
VPS9D1Q9Y2B5 RPL7AP26-201ENST00000488538 813 ntBASIC7.84□□□□□ -1.15
VPS9D1Q9Y2B5 RPL7P51-201ENST00000490532 749 ntBASIC7.84□□□□□ -1.15
VPS9D1Q9Y2B5 RNA5SP454-201ENST00000517231 127 ntBASIC7.84□□□□□ -1.15
VPS9D1Q9Y2B5 AC016954.1-201ENST00000549976 745 ntBASIC7.84□□□□□ -1.15
VPS9D1Q9Y2B5 AC026771.1-201ENST00000564672 415 ntTSL 2 BASIC7.84□□□□□ -1.15
VPS9D1Q9Y2B5 AC007495.1-202ENST00000565155 559 ntTSL 2 BASIC7.84□□□□□ -1.15
VPS9D1Q9Y2B5 AL122017.1-202ENST00000570612 319 ntTSL 5 BASIC7.84□□□□□ -1.15
VPS9D1Q9Y2B5 AC011824.2-202ENST00000578602 533 ntTSL 4 BASIC7.84□□□□□ -1.15
VPS9D1Q9Y2B5 AC008770.1-206ENST00000589551 523 ntTSL 3 BASIC7.84□□□□□ -1.15
VPS9D1Q9Y2B5 AC092070.3-201ENST00000596041 337 ntTSL 3 BASIC7.84□□□□□ -1.15
VPS9D1Q9Y2B5 AL390877.1-201ENST00000605704 214 ntBASIC7.84□□□□□ -1.15
VPS9D1Q9Y2B5 SLC20A1P2-201ENST00000618036 966 ntBASIC7.84□□□□□ -1.15
VPS9D1Q9Y2B5 MED15P6-202ENST00000621415 787 ntBASIC7.84□□□□□ -1.15
VPS9D1Q9Y2B5 KLF8-206ENST00000640927 1150 ntTSL 1 (best) BASIC7.84□□□□□ -1.15
VPS9D1Q9Y2B5 AL590065.1-201ENST00000603371 4774 ntBASIC7.84□□□□□ -1.15
VPS9D1Q9Y2B5 MDM4-205ENST00000391947 10008 ntTSL 1 (best) BASIC7.84□□□□□ -1.15
VPS9D1Q9Y2B5 SUPT20H-205ENST00000464744 2625 ntAPPRIS P3 TSL 2 BASIC7.84□□□□□ -1.15
VPS9D1Q9Y2B5 FOPNL-206ENST00000573968 2039 ntTSL 2 BASIC7.84□□□□□ -1.15
VPS9D1Q9Y2B5 CHN2-208ENST00000412711 2991 ntTSL 2 BASIC7.84□□□□□ -1.15
VPS9D1Q9Y2B5 ZNF396-201ENST00000306346 2788 ntTSL 1 (best) BASIC7.84□□□□□ -1.15
VPS9D1Q9Y2B5 MAP4-209ENST00000434267 2772 ntTSL 2 BASIC7.84□□□□□ -1.15
VPS9D1Q9Y2B5 HAVCR1-205ENST00000523175 1449 ntAPPRIS P3 TSL 1 (best) BASIC7.84□□□□□ -1.15
VPS9D1Q9Y2B5 A2M-201ENST00000318602 4844 ntAPPRIS P1 TSL 1 (best) BASIC7.84□□□□□ -1.15
VPS9D1Q9Y2B5 ACOD1-201ENST00000377462 2165 ntAPPRIS P2 TSL 5 BASIC7.84□□□□□ -1.15
VPS9D1Q9Y2B5 GLRA4-201ENST00000372617 1795 ntAPPRIS P1 TSL 5 BASIC7.84□□□□□ -1.15
VPS9D1Q9Y2B5 EYA4-213ENST00000531901 2892 ntAPPRIS ALT2 TSL 2 BASIC7.84□□□□□ -1.15
VPS9D1Q9Y2B5 MBNL3-201ENST00000370839 1575 ntAPPRIS ALT1 TSL 1 (best) BASIC7.84□□□□□ -1.15
VPS9D1Q9Y2B5 KCNN3-205ENST00000618040 13057 ntTSL 5 BASIC7.84□□□□□ -1.16
VPS9D1Q9Y2B5 SERPINB4-201ENST00000341074 1749 ntAPPRIS P1 TSL 1 (best) BASIC7.83□□□□□ -1.16
VPS9D1Q9Y2B5 ARMC3-204ENST00000409983 2779 ntAPPRIS ALT2 TSL 2 BASIC7.83□□□□□ -1.16
VPS9D1Q9Y2B5 MEF2C-221ENST00000514015 2772 ntTSL 5 BASIC7.83□□□□□ -1.16
VPS9D1Q9Y2B5 LDHA-201ENST00000227157 1887 ntTSL 3 BASIC7.83□□□□□ -1.16
VPS9D1Q9Y2B5 TMEM246-203ENST00000374851 5070 ntAPPRIS P1 TSL 1 (best) BASIC7.83□□□□□ -1.16
VPS9D1Q9Y2B5 LINC00649-203ENST00000427447 9124 ntTSL 1 (best) BASIC7.83□□□□□ -1.16
VPS9D1Q9Y2B5 AC003985.2-201ENST00000562268 1669 ntBASIC7.83□□□□□ -1.16
VPS9D1Q9Y2B5 TRDN-206ENST00000628709 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC7.83□□□□□ -1.16
VPS9D1Q9Y2B5 AC018765.1-201ENST00000623357 3446 ntBASIC7.83□□□□□ -1.16
VPS9D1Q9Y2B5 MAPK10-347ENST00000641762 2856 ntBASIC7.83□□□□□ -1.16
VPS9D1Q9Y2B5 OSBPL9P1-201ENST00000604744 1469 ntBASIC7.83□□□□□ -1.16
VPS9D1Q9Y2B5 ZNF430-203ENST00000595401 3021 ntTSL 2 BASIC7.83□□□□□ -1.16
VPS9D1Q9Y2B5 MITF-214ENST00000472437 1995 ntAPPRIS ALT1 TSL 2 BASIC7.83□□□□□ -1.16
VPS9D1Q9Y2B5 ZMYND8-221ENST00000619049 4027 ntTSL 5 BASIC7.83□□□□□ -1.16
VPS9D1Q9Y2B5 DEFA6-201ENST00000297436 469 ntAPPRIS P1 TSL 1 (best) BASIC7.83□□□□□ -1.16
VPS9D1Q9Y2B5 Y_RNA.14-201ENST00000362415 103 ntBASIC7.83□□□□□ -1.16
Retrieved 100 of 98,524 protein–RNA pairs in 78.9 ms