Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 MIR6839-201ENST00000620425 113 ntBASIC9.56□□□□□ -0.88
SHROOM4Q9ULL8 MIR6830-201ENST00000636015 70 ntBASIC9.56□□□□□ -0.88
SHROOM4Q9ULL8 CYP3A7-CYP3A51P-202ENST00000620220 1704 ntAPPRIS P1 TSL 1 (best) BASIC9.56□□□□□ -0.88
SHROOM4Q9ULL8 CASC1-204ENST00000395990 2417 ntAPPRIS ALT2 TSL 1 (best) BASIC9.56□□□□□ -0.88
SHROOM4Q9ULL8 AC016687.3-202ENST00000505018 2404 ntTSL 1 (best) BASIC9.56□□□□□ -0.88
SHROOM4Q9ULL8 CUL4AP1-201ENST00000514750 1863 ntBASIC9.56□□□□□ -0.88
SHROOM4Q9ULL8 CR382285.2-201ENST00000624662 1495 ntBASIC9.56□□□□□ -0.88
SHROOM4Q9ULL8 CHD8-202ENST00000430710 7420 ntAPPRIS P3 TSL 1 (best) BASIC9.56□□□□□ -0.88
SHROOM4Q9ULL8 VPS13B-202ENST00000357162 14019 ntAPPRIS ALT1 TSL 1 (best) BASIC9.55□□□□□ -0.88
SHROOM4Q9ULL8 TTC37-201ENST00000358746 5706 ntAPPRIS P1 TSL 1 (best) BASIC9.55□□□□□ -0.88
SHROOM4Q9ULL8 ASNSP1-204ENST00000641977 1664 ntBASIC9.55□□□□□ -0.88
SHROOM4Q9ULL8 GIGYF2-246ENST00000629305 7878 ntTSL 5 BASIC9.55□□□□□ -0.88
SHROOM4Q9ULL8 NAV2-AS5-201ENST00000528726 3307 ntTSL 1 (best) BASIC9.55□□□□□ -0.88
SHROOM4Q9ULL8 COA1-201ENST00000223336 927 ntAPPRIS P3 TSL 2 BASIC9.55□□□□□ -0.88
SHROOM4Q9ULL8 RPL31-204ENST00000409038 817 ntTSL 2 BASIC9.55□□□□□ -0.88
SHROOM4Q9ULL8 AF186996.5-201ENST00000418098 904 ntBASIC9.55□□□□□ -0.88
SHROOM4Q9ULL8 TEX41-206ENST00000432608 661 ntTSL 3 BASIC9.55□□□□□ -0.88
SHROOM4Q9ULL8 AC090018.1-201ENST00000434369 367 ntBASIC9.55□□□□□ -0.88
SHROOM4Q9ULL8 AL356390.1-201ENST00000455684 397 ntBASIC9.55□□□□□ -0.88
SHROOM4Q9ULL8 AL358176.1-201ENST00000457477 357 ntTSL 5 BASIC9.55□□□□□ -0.88
SHROOM4Q9ULL8 RPS12P31-201ENST00000491419 398 ntBASIC9.55□□□□□ -0.88
SHROOM4Q9ULL8 PPM1AP1-201ENST00000502740 1135 ntBASIC9.55□□□□□ -0.88
SHROOM4Q9ULL8 AC135457.1-201ENST00000503553 664 ntTSL 3 BASIC9.55□□□□□ -0.88
SHROOM4Q9ULL8 AC139713.2-213ENST00000505000 796 ntTSL 2 BASIC9.55□□□□□ -0.88
SHROOM4Q9ULL8 AC011396.2-202ENST00000511390 375 ntTSL 3 BASIC9.55□□□□□ -0.88
SHROOM4Q9ULL8 AC090541.1-201ENST00000519803 467 ntTSL 3 BASIC9.55□□□□□ -0.88
SHROOM4Q9ULL8 AC138701.1-201ENST00000524329 714 ntBASIC9.55□□□□□ -0.88
SHROOM4Q9ULL8 EIF1P5-201ENST00000585002 234 ntBASIC9.55□□□□□ -0.88
SHROOM4Q9ULL8 AC025857.2-201ENST00000602711 238 ntBASIC9.55□□□□□ -0.88
SHROOM4Q9ULL8 AC073218.2-202ENST00000605962 617 ntTSL 5 BASIC9.55□□□□□ -0.88
SHROOM4Q9ULL8 LINC02183-201ENST00000637822 1732 ntTSL 5 BASIC9.55□□□□□ -0.88
SHROOM4Q9ULL8 CRB1-203ENST00000367400 4932 ntAPPRIS P1 TSL 1 (best) BASIC9.55□□□□□ -0.88
SHROOM4Q9ULL8 GSTCD-202ENST00000394728 2416 ntAPPRIS P1 TSL 5 BASIC9.55□□□□□ -0.88
SHROOM4Q9ULL8 RACGAP1-202ENST00000427314 3229 ntAPPRIS P1 TSL 1 (best) BASIC9.55□□□□□ -0.88
SHROOM4Q9ULL8 MFAP1-201ENST00000267812 2155 ntAPPRIS P1 TSL 1 (best) BASIC9.55□□□□□ -0.88
SHROOM4Q9ULL8 AL355834.1-201ENST00000556602 3965 ntBASIC9.55□□□□□ -0.88
SHROOM4Q9ULL8 SYCP1-209ENST00000613524 3034 ntTSL 1 (best) BASIC9.55□□□□□ -0.88
SHROOM4Q9ULL8 DCTN4-201ENST00000424236 4054 ntTSL 2 BASIC9.54□□□□□ -0.88
SHROOM4Q9ULL8 C1orf140-202ENST00000439004 4340 ntTSL 1 (best) BASIC9.54□□□□□ -0.88
SHROOM4Q9ULL8 OR5F1-201ENST00000278409 945 ntAPPRIS P1 BASIC9.54□□□□□ -0.88
SHROOM4Q9ULL8 RNU1-85P-201ENST00000364127 164 ntBASIC9.54□□□□□ -0.88
SHROOM4Q9ULL8 LINC01614-201ENST00000415479 648 ntTSL 2 BASIC9.54□□□□□ -0.88
SHROOM4Q9ULL8 AC096644.3-201ENST00000416788 338 ntBASIC9.54□□□□□ -0.88
SHROOM4Q9ULL8 KCNMA1-AS3-201ENST00000418515 701 ntTSL 3 BASIC9.54□□□□□ -0.88
SHROOM4Q9ULL8 AL356056.1-206ENST00000424615 407 ntTSL 5 BASIC9.54□□□□□ -0.88
SHROOM4Q9ULL8 AC010326.1-201ENST00000462726 602 ntBASIC9.54□□□□□ -0.88
SHROOM4Q9ULL8 IGKV2-30-201ENST00000468494 390 ntAPPRIS P1 BASIC9.54□□□□□ -0.88
SHROOM4Q9ULL8 SEPT7P9-201ENST00000475691 413 ntTSL 1 (best) BASIC9.54□□□□□ -0.88
SHROOM4Q9ULL8 LINC00632-202ENST00000498732 746 ntTSL 3 BASIC9.54□□□□□ -0.88
SHROOM4Q9ULL8 SCARNA22-201ENST00000503991 125 ntBASIC9.54□□□□□ -0.88
SHROOM4Q9ULL8 AK3P4-201ENST00000504283 583 ntBASIC9.54□□□□□ -0.88
SHROOM4Q9ULL8 AC010261.2-201ENST00000515563 588 ntTSL 2 BASIC9.54□□□□□ -0.88
SHROOM4Q9ULL8 AC092709.1-201ENST00000521355 1045 ntBASIC9.54□□□□□ -0.88
SHROOM4Q9ULL8 Z98949.1-220ENST00000609809 804 ntTSL 5 BASIC9.54□□□□□ -0.88
SHROOM4Q9ULL8 PDCD6IPP1-202ENST00000622242 1064 ntBASIC9.54□□□□□ -0.88
SHROOM4Q9ULL8 SPTY2D1-AS1-204ENST00000634992 373 ntAPPRIS P5 TSL 5 BASIC9.54□□□□□ -0.88
SHROOM4Q9ULL8 PDS5B-201ENST00000315596 7497 ntAPPRIS P1 TSL 1 (best) BASIC9.54□□□□□ -0.88
SHROOM4Q9ULL8 LINC01277-201ENST00000419957 2398 ntTSL 2 BASIC9.54□□□□□ -0.88
SHROOM4Q9ULL8 MS4A14-208ENST00000531783 2910 ntAPPRIS ALT2 TSL 5 BASIC9.54□□□□□ -0.88
SHROOM4Q9ULL8 ARHGEF12-213ENST00000532993 8753 ntTSL 1 (best) BASIC9.54□□□□□ -0.88
SHROOM4Q9ULL8 SLC1A3-201ENST00000265113 4170 ntAPPRIS P1 TSL 1 (best) BASIC9.54□□□□□ -0.88
SHROOM4Q9ULL8 MAMDC2-AS1-201ENST00000377178 1504 ntTSL 1 (best) BASIC9.54□□□□□ -0.88
SHROOM4Q9ULL8 ZNF83-204ENST00000545872 2633 ntAPPRIS P1 TSL 2 BASIC9.54□□□□□ -0.88
SHROOM4Q9ULL8 ZNF571-203ENST00000451802 2265 ntAPPRIS P1 TSL 1 (best) BASIC9.54□□□□□ -0.88
SHROOM4Q9ULL8 NPSR1-AS1-202ENST00000419766 4821 ntTSL 1 (best) BASIC9.54□□□□□ -0.88
SHROOM4Q9ULL8 AP001273.1-201ENST00000624493 3152 ntBASIC9.54□□□□□ -0.88
SHROOM4Q9ULL8 TRAV16-201ENST00000390444 329 ntAPPRIS P1 BASIC9.53□□□□□ -0.88
SHROOM4Q9ULL8 LINC02528-201ENST00000417800 381 ntTSL 2 BASIC9.53□□□□□ -0.88
SHROOM4Q9ULL8 AL391704.2-201ENST00000418379 981 ntTSL 1 (best) BASIC9.53□□□□□ -0.88
SHROOM4Q9ULL8 MAGI2-AS1-201ENST00000428298 472 ntTSL 3 BASIC9.53□□□□□ -0.88
SHROOM4Q9ULL8 AL731574.1-201ENST00000447757 456 ntTSL 5 BASIC9.53□□□□□ -0.88
SHROOM4Q9ULL8 AC109439.2-201ENST00000502421 564 ntTSL 4 BASIC9.53□□□□□ -0.88
SHROOM4Q9ULL8 AC026402.1-201ENST00000513642 170 ntBASIC9.53□□□□□ -0.88
SHROOM4Q9ULL8 AC111000.6-201ENST00000514471 709 ntBASIC9.53□□□□□ -0.88
SHROOM4Q9ULL8 RNA5SP392-201ENST00000516905 112 ntBASIC9.53□□□□□ -0.88
SHROOM4Q9ULL8 AC136777.2-201ENST00000522979 358 ntBASIC9.53□□□□□ -0.88
SHROOM4Q9ULL8 MRPS21P9-201ENST00000571150 257 ntBASIC9.53□□□□□ -0.88
SHROOM4Q9ULL8 AC005377.1-201ENST00000605126 456 ntBASIC9.53□□□□□ -0.88
SHROOM4Q9ULL8 AC093388.1-201ENST00000609166 430 ntBASIC9.53□□□□□ -0.88
SHROOM4Q9ULL8 TRPM6-202ENST00000360774 8425 ntTSL 1 (best) BASIC9.53□□□□□ -0.88
SHROOM4Q9ULL8 POLR2B-201ENST00000314595 3748 ntAPPRIS P1 TSL 1 (best) BASIC9.53□□□□□ -0.88
SHROOM4Q9ULL8 AC006210.2-201ENST00000367074 1545 ntBASIC9.53□□□□□ -0.88
SHROOM4Q9ULL8 NSD1-201ENST00000347982 7688 ntTSL 1 (best) BASIC9.53□□□□□ -0.88
SHROOM4Q9ULL8 KIAA0408-204ENST00000483725 3284 ntAPPRIS P2 TSL 5 BASIC9.53□□□□□ -0.88
SHROOM4Q9ULL8 CFAP61-201ENST00000245957 4082 ntAPPRIS P2 TSL 1 (best) BASIC9.53□□□□□ -0.88
SHROOM4Q9ULL8 CEP152-201ENST00000325747 4986 ntAPPRIS ALT2 TSL 1 (best) BASIC9.53□□□□□ -0.88
SHROOM4Q9ULL8 AC090826.1-202ENST00000562009 3337 ntTSL 1 (best) BASIC9.53□□□□□ -0.88
SHROOM4Q9ULL8 AC007068.1-201ENST00000396690 844 ntBASIC9.53□□□□□ -0.88
SHROOM4Q9ULL8 MIR298-201ENST00000401212 88 ntBASIC9.53□□□□□ -0.88
SHROOM4Q9ULL8 AL049812.3-201ENST00000412348 417 ntTSL 3 BASIC9.53□□□□□ -0.88
SHROOM4Q9ULL8 GTF2IP5-201ENST00000414608 731 ntBASIC9.53□□□□□ -0.88
SHROOM4Q9ULL8 AC004415.1-201ENST00000422697 449 ntTSL 3 BASIC9.53□□□□□ -0.88
SHROOM4Q9ULL8 AC122718.1-201ENST00000439448 744 ntBASIC9.53□□□□□ -0.88
SHROOM4Q9ULL8 AC007655.1-201ENST00000444324 357 ntTSL 3 BASIC9.53□□□□□ -0.88
SHROOM4Q9ULL8 AC096644.1-201ENST00000446169 390 ntTSL 3 BASIC9.53□□□□□ -0.88
SHROOM4Q9ULL8 SLC25A18P1-201ENST00000449385 454 ntBASIC9.53□□□□□ -0.88
SHROOM4Q9ULL8 AC096543.1-201ENST00000455038 823 ntTSL 3 BASIC9.53□□□□□ -0.88
SHROOM4Q9ULL8 FAM133DP-201ENST00000464802 691 ntBASIC9.53□□□□□ -0.88
SHROOM4Q9ULL8 AC090519.2-201ENST00000559034 655 ntTSL 5 BASIC9.53□□□□□ -0.88
SHROOM4Q9ULL8 AC105402.3-203ENST00000608822 885 ntTSL 5 BASIC9.53□□□□□ -0.88
Retrieved 100 of 98,524 protein–RNA pairs in 195 ms