Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 AP000648.2-201ENST00000624182 404 ntBASIC5.18□□□□□ -1.58
VPS39Q96JC1 LINC01338-201ENST00000627179 632 ntTSL 3 BASIC5.18□□□□□ -1.58
VPS39Q96JC1 LAMTOR5-AS1-244ENST00000629484 780 ntTSL 5 BASIC5.18□□□□□ -1.58
VPS39Q96JC1 AC073869.10-201ENST00000642016 354 ntBASIC5.18□□□□□ -1.58
VPS39Q96JC1 SAMMSON-227ENST00000642114 1199 ntBASIC5.18□□□□□ -1.58
VPS39Q96JC1 METTL15-201ENST00000303459 4068 ntTSL 2 BASIC5.18□□□□□ -1.58
VPS39Q96JC1 TCP1P3-201ENST00000414406 1498 ntBASIC5.18□□□□□ -1.58
VPS39Q96JC1 AC092079.1-201ENST00000558620 1985 ntBASIC5.18□□□□□ -1.58
VPS39Q96JC1 LINC00343-202ENST00000415294 1320 ntTSL 5 BASIC5.18□□□□□ -1.58
VPS39Q96JC1 CLDND1-208ENST00000503004 2818 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
VPS39Q96JC1 ZFAND6-223ENST00000616533 1653 ntAPPRIS P1 TSL 5 BASIC5.18□□□□□ -1.58
VPS39Q96JC1 CSMD3-201ENST00000297405 13212 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
VPS39Q96JC1 AC090826.1-202ENST00000562009 3337 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
VPS39Q96JC1 AC104118.1-201ENST00000607625 1589 ntBASIC5.17□□□□□ -1.58
VPS39Q96JC1 OR55B1P-203ENST00000641518 2602 ntBASIC5.17□□□□□ -1.58
VPS39Q96JC1 STIL-204ENST00000396221 4558 ntAPPRIS ALT2 TSL 1 (best) BASIC5.17□□□□□ -1.58
VPS39Q96JC1 DNAAF4-CCPG1-201ENST00000565113 4589 ntTSL 2 BASIC5.17□□□□□ -1.58
VPS39Q96JC1 LCMT1-AS2-202ENST00000565214 5666 ntBASIC5.17□□□□□ -1.58
VPS39Q96JC1 SLC10A7-203ENST00000432059 3747 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
VPS39Q96JC1 AC100778.3-201ENST00000580060 1750 ntBASIC5.17□□□□□ -1.58
VPS39Q96JC1 FAM216B-201ENST00000313851 3243 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
VPS39Q96JC1 SLC4A10-203ENST00000415876 5578 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
VPS39Q96JC1 ITGB3BP-201ENST00000271002 948 ntAPPRIS P3 TSL 1 (best) BASIC5.17□□□□□ -1.58
VPS39Q96JC1 RNA5SP90-201ENST00000364801 99 ntBASIC5.17□□□□□ -1.58
VPS39Q96JC1 DEFB136-201ENST00000382209 237 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
VPS39Q96JC1 TRAV16-201ENST00000390444 329 ntAPPRIS P1 BASIC5.17□□□□□ -1.58
VPS39Q96JC1 RNU1-149P-201ENST00000390870 161 ntBASIC5.17□□□□□ -1.58
VPS39Q96JC1 AC005323.2-201ENST00000399342 583 ntTSL 3 BASIC5.17□□□□□ -1.58
VPS39Q96JC1 AL035079.1-201ENST00000405210 287 ntBASIC5.17□□□□□ -1.58
VPS39Q96JC1 LINC02518-201ENST00000421737 524 ntTSL 3 BASIC5.17□□□□□ -1.58
VPS39Q96JC1 AC104333.2-201ENST00000422630 192 ntBASIC5.17□□□□□ -1.58
VPS39Q96JC1 AL360007.1-201ENST00000426166 349 ntTSL 3 BASIC5.17□□□□□ -1.58
VPS39Q96JC1 RPS26P47-201ENST00000427219 348 ntBASIC5.17□□□□□ -1.58
VPS39Q96JC1 CACYBPP1-201ENST00000438592 684 ntBASIC5.17□□□□□ -1.58
VPS39Q96JC1 RPS29P10-201ENST00000439197 166 ntBASIC5.17□□□□□ -1.58
VPS39Q96JC1 PRKACB-213ENST00000446538 1112 ntTSL 2 BASIC5.17□□□□□ -1.58
VPS39Q96JC1 AC097173.1-201ENST00000505862 819 ntBASIC5.17□□□□□ -1.58
VPS39Q96JC1 OSMR-AS1-201ENST00000506463 800 ntTSL 3 BASIC5.17□□□□□ -1.58
VPS39Q96JC1 SPINK13-203ENST00000512953 1022 ntAPPRIS P2 TSL 2 BASIC5.17□□□□□ -1.58
VPS39Q96JC1 AC069272.1-201ENST00000514843 680 ntTSL 3 BASIC5.17□□□□□ -1.58
VPS39Q96JC1 RNU6-941P-201ENST00000516346 108 ntBASIC5.17□□□□□ -1.58
VPS39Q96JC1 SEC11B-201ENST00000518383 499 ntBASIC5.17□□□□□ -1.58
VPS39Q96JC1 SUGT1P3-202ENST00000604259 383 ntBASIC5.17□□□□□ -1.58
VPS39Q96JC1 LINC02112-204ENST00000606222 429 ntTSL 5 BASIC5.17□□□□□ -1.58
VPS39Q96JC1 5_8S_rRNA.1-201ENST00000614365 152 ntBASIC5.17□□□□□ -1.58
VPS39Q96JC1 AC092159.4-201ENST00000624944 550 ntBASIC5.17□□□□□ -1.58
VPS39Q96JC1 AC135068.12-201ENST00000637370 931 ntBASIC5.17□□□□□ -1.58
VPS39Q96JC1 AC115220.1-201ENST00000330020 1453 ntAPPRIS P1 TSL 3 BASIC5.17□□□□□ -1.58
VPS39Q96JC1 INPP4B-201ENST00000262992 3741 ntAPPRIS P1 TSL 5 BASIC5.17□□□□□ -1.58
VPS39Q96JC1 MROH9-202ENST00000367759 3165 ntAPPRIS ALT2 TSL 5 BASIC5.17□□□□□ -1.58
VPS39Q96JC1 CRISP1-201ENST00000329411 1709 ntTSL 5 BASIC5.17□□□□□ -1.58
VPS39Q96JC1 NUP107-202ENST00000378905 2859 ntTSL 5 BASIC5.17□□□□□ -1.58
VPS39Q96JC1 AC010329.2-201ENST00000595195 2737 ntBASIC5.17□□□□□ -1.58
VPS39Q96JC1 CYP3A43-203ENST00000342499 1396 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
VPS39Q96JC1 AP000756.2-201ENST00000624168 2567 ntBASIC5.16□□□□□ -1.58
VPS39Q96JC1 LRIT3-201ENST00000327908 3781 ntTSL 2 BASIC5.16□□□□□ -1.58
VPS39Q96JC1 PPIG-201ENST00000260970 6368 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
VPS39Q96JC1 NCOA3-201ENST00000371997 6750 ntAPPRIS ALT2 TSL 1 (best) BASIC5.16□□□□□ -1.58
VPS39Q96JC1 R3HDM1-201ENST00000264160 4648 ntAPPRIS P3 TSL 1 (best) BASIC5.16□□□□□ -1.58
VPS39Q96JC1 OR51Q1-201ENST00000300778 1096 ntAPPRIS P1 BASIC5.16□□□□□ -1.58
VPS39Q96JC1 MIR323A-201ENST00000362199 86 ntBASIC5.16□□□□□ -1.58
VPS39Q96JC1 U3.3-201ENST00000362986 216 ntBASIC5.16□□□□□ -1.58
VPS39Q96JC1 TRAV23DV6-201ENST00000390451 409 ntAPPRIS P1 BASIC5.16□□□□□ -1.58
VPS39Q96JC1 U3.32-201ENST00000408116 212 ntBASIC5.16□□□□□ -1.58
VPS39Q96JC1 AL390774.1-201ENST00000411924 246 ntBASIC5.16□□□□□ -1.58
VPS39Q96JC1 AC073257.2-201ENST00000413991 528 ntTSL 3 BASIC5.16□□□□□ -1.58
VPS39Q96JC1 LINC00867-202ENST00000415417 488 ntTSL 3 BASIC5.16□□□□□ -1.58
VPS39Q96JC1 AL162400.1-201ENST00000418091 359 ntTSL 5 BASIC5.16□□□□□ -1.58
VPS39Q96JC1 AC004594.1-217ENST00000422260 325 ntTSL 2 BASIC5.16□□□□□ -1.58
VPS39Q96JC1 AL389925.1-201ENST00000432257 728 ntBASIC5.16□□□□□ -1.58
VPS39Q96JC1 TMX2P1-201ENST00000436507 708 ntBASIC5.16□□□□□ -1.58
VPS39Q96JC1 RPL7AP61-201ENST00000443410 636 ntBASIC5.16□□□□□ -1.58
VPS39Q96JC1 AC003991.1-205ENST00000447758 625 ntTSL 5 BASIC5.16□□□□□ -1.58
VPS39Q96JC1 BUD31P2-201ENST00000449374 300 ntBASIC5.16□□□□□ -1.58
VPS39Q96JC1 AC091180.1-201ENST00000462104 372 ntBASIC5.16□□□□□ -1.58
VPS39Q96JC1 RPSAP39-201ENST00000467439 883 ntBASIC5.16□□□□□ -1.58
VPS39Q96JC1 RN7SL717P-201ENST00000478343 297 ntBASIC5.16□□□□□ -1.58
VPS39Q96JC1 RPL7P6-201ENST00000480903 738 ntBASIC5.16□□□□□ -1.58
VPS39Q96JC1 CREM-238ENST00000488741 651 ntTSL 2 BASIC5.16□□□□□ -1.58
VPS39Q96JC1 AC005412.2-201ENST00000492004 341 ntBASIC5.16□□□□□ -1.58
VPS39Q96JC1 GNPDA2-202ENST00000507534 1050 ntTSL 2 BASIC5.16□□□□□ -1.58
VPS39Q96JC1 RSF1-IT2-201ENST00000529656 566 ntTSL 5 BASIC5.16□□□□□ -1.58
VPS39Q96JC1 CCDC60-203ENST00000536742 886 ntAPPRIS ALT2 TSL 2 BASIC5.16□□□□□ -1.58
VPS39Q96JC1 CA1-224ENST00000542576 1236 ntAPPRIS P1 TSL 5 BASIC5.16□□□□□ -1.58
VPS39Q96JC1 AC127381.1-201ENST00000555979 939 ntBASIC5.16□□□□□ -1.58
VPS39Q96JC1 NPM1P45-201ENST00000583151 559 ntBASIC5.16□□□□□ -1.58
VPS39Q96JC1 AL136311.1-213ENST00000586466 520 ntTSL 5 BASIC5.16□□□□□ -1.58
VPS39Q96JC1 AC006504.5-202ENST00000586784 656 ntTSL 2 BASIC5.16□□□□□ -1.58
VPS39Q96JC1 LINC00663-202ENST00000586816 306 ntTSL 2 BASIC5.16□□□□□ -1.58
VPS39Q96JC1 AC006504.7-201ENST00000592806 924 ntTSL 3 BASIC5.16□□□□□ -1.58
VPS39Q96JC1 AP005131.7-201ENST00000610087 611 ntBASIC5.16□□□□□ -1.58
VPS39Q96JC1 OR8H1-202ENST00000610894 927 ntAPPRIS ALT1 BASIC5.16□□□□□ -1.58
VPS39Q96JC1 OR51Q1-202ENST00000641085 1096 ntAPPRIS P1 BASIC5.16□□□□□ -1.58
VPS39Q96JC1 AC009313.2-201ENST00000417893 1941 ntBASIC5.16□□□□□ -1.58
VPS39Q96JC1 CASP10-204ENST00000346817 3926 ntAPPRIS ALT2 TSL 5 BASIC5.16□□□□□ -1.58
VPS39Q96JC1 MYO9A-209ENST00000564571 8111 ntAPPRIS ALT2 TSL 1 (best) BASIC5.16□□□□□ -1.58
VPS39Q96JC1 OR10A3-202ENST00000642047 2650 ntAPPRIS P1 BASIC5.16□□□□□ -1.58
VPS39Q96JC1 ZNF679-202ENST00000421025 1567 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
VPS39Q96JC1 CASC19-221ENST00000641309 1382 ntBASIC5.16□□□□□ -1.58
VPS39Q96JC1 TBC1D23-201ENST00000344949 3656 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 100.7 ms