Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 AC079896.1-201ENST00000455845 488 ntTSL 3 BASIC6.01□□□□□ -1.45
USP39Q53GS9 AL355032.1-201ENST00000472981 438 ntBASIC6.01□□□□□ -1.45
USP39Q53GS9 MTND2P14-201ENST00000482139 351 ntBASIC6.01□□□□□ -1.45
USP39Q53GS9 COX6B1P2-201ENST00000489624 230 ntBASIC6.01□□□□□ -1.45
USP39Q53GS9 OR2A3P-201ENST00000493774 953 ntBASIC6.01□□□□□ -1.45
USP39Q53GS9 SOX2-OT-216ENST00000497122 578 ntTSL 4 BASIC6.01□□□□□ -1.45
USP39Q53GS9 NENFP3-201ENST00000503735 313 ntBASIC6.01□□□□□ -1.45
USP39Q53GS9 AC108935.1-201ENST00000504874 518 ntTSL 2 BASIC6.01□□□□□ -1.45
USP39Q53GS9 MOCS2-205ENST00000508922 1210 ntTSL 5 BASIC6.01□□□□□ -1.45
USP39Q53GS9 AC093752.1-206ENST00000511823 336 ntBASIC6.01□□□□□ -1.45
USP39Q53GS9 BX510359.5-201ENST00000515651 304 ntBASIC6.01□□□□□ -1.45
USP39Q53GS9 LINC02143-201ENST00000519929 520 ntTSL 3 BASIC6.01□□□□□ -1.45
USP39Q53GS9 ZFPM2-AS1-204ENST00000520433 748 ntTSL 3 BASIC6.01□□□□□ -1.45
USP39Q53GS9 HMGB1P1-201ENST00000522557 636 ntBASIC6.01□□□□□ -1.45
USP39Q53GS9 HDAC2-AS2-217ENST00000523087 493 ntTSL 3 BASIC6.01□□□□□ -1.45
USP39Q53GS9 AC090692.1-202ENST00000525363 607 ntTSL 4 BASIC6.01□□□□□ -1.45
USP39Q53GS9 AC021393.1-201ENST00000531077 433 ntTSL 3 BASIC6.01□□□□□ -1.45
USP39Q53GS9 LINC02398-201ENST00000536666 431 ntTSL 3 BASIC6.01□□□□□ -1.45
USP39Q53GS9 AC022075.3-201ENST00000539009 649 ntTSL 3 BASIC6.01□□□□□ -1.45
USP39Q53GS9 DPRXP4-201ENST00000578053 568 ntBASIC6.01□□□□□ -1.45
USP39Q53GS9 AC008109.1-201ENST00000583163 826 ntTSL 2 BASIC6.01□□□□□ -1.45
USP39Q53GS9 AC093484.5-201ENST00000585048 304 ntTSL 3 BASIC6.01□□□□□ -1.45
USP39Q53GS9 AC022916.4-201ENST00000585646 475 ntTSL 3 BASIC6.01□□□□□ -1.45
USP39Q53GS9 ZNF540-204ENST00000586792 564 ntTSL 3 BASIC6.01□□□□□ -1.45
USP39Q53GS9 AP003465.2-201ENST00000602571 373 ntBASIC6.01□□□□□ -1.45
USP39Q53GS9 AC093765.1-201ENST00000603758 881 ntBASIC6.01□□□□□ -1.45
USP39Q53GS9 AC105129.3-201ENST00000605455 485 ntBASIC6.01□□□□□ -1.45
USP39Q53GS9 AP001596.2-201ENST00000608410 312 ntBASIC6.01□□□□□ -1.45
USP39Q53GS9 VIS1.1-201ENST00000610517 203 ntBASIC6.01□□□□□ -1.45
USP39Q53GS9 AC015540.1-201ENST00000615828 501 ntBASIC6.01□□□□□ -1.45
USP39Q53GS9 ZNF461-214ENST00000618437 774 ntTSL 5 BASIC6.01□□□□□ -1.45
USP39Q53GS9 AL121890.3-201ENST00000618494 516 ntBASIC6.01□□□□□ -1.45
USP39Q53GS9 AL035661.1-201ENST00000620459 1144 ntBASIC6.01□□□□□ -1.45
USP39Q53GS9 LINC01320-210ENST00000626008 929 ntTSL 5 BASIC6.01□□□□□ -1.45
USP39Q53GS9 AC003992.1-201ENST00000635364 557 ntBASIC6.01□□□□□ -1.45
USP39Q53GS9 AC103706.2-201ENST00000638080 240 ntBASIC6.01□□□□□ -1.45
USP39Q53GS9 AC092375.1-202ENST00000639452 404 ntTSL 3 BASIC6.01□□□□□ -1.45
USP39Q53GS9 IL15-204ENST00000477265 6026 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
USP39Q53GS9 CEP290-202ENST00000397838 2421 ntTSL 5 BASIC6.01□□□□□ -1.45
USP39Q53GS9 PARP4P2-201ENST00000446672 3326 ntBASIC6.01□□□□□ -1.45
USP39Q53GS9 AC005725.1-201ENST00000577346 2607 ntBASIC6.01□□□□□ -1.45
USP39Q53GS9 ARPP19-211ENST00000568196 1489 ntTSL 2 BASIC6.01□□□□□ -1.45
USP39Q53GS9 RFC1-201ENST00000349703 4859 ntAPPRIS P3 TSL 1 (best) BASIC6.01□□□□□ -1.45
USP39Q53GS9 SMARCA2-206ENST00000382185 1584 ntTSL 2 BASIC6.01□□□□□ -1.45
USP39Q53GS9 AIMP1-202ENST00000394701 2586 ntAPPRIS ALT2 TSL 1 (best) BASIC6.01□□□□□ -1.45
USP39Q53GS9 SLC7A11-201ENST00000280612 9645 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
USP39Q53GS9 PEX2-201ENST00000357039 4317 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
USP39Q53GS9 ZNF542P-204ENST00000482727 1305 ntBASIC6□□□□□ -1.45
USP39Q53GS9 GRAMD1C-208ENST00000472026 1876 ntTSL 2 BASIC6□□□□□ -1.45
USP39Q53GS9 MECOM-202ENST00000433243 3508 ntTSL 1 (best) BASIC6□□□□□ -1.45
USP39Q53GS9 SLC4A10-202ENST00000375514 5710 ntAPPRIS ALT1 TSL 2 BASIC6□□□□□ -1.45
USP39Q53GS9 CEPT1-211ENST00000615636 1966 ntTSL 5 BASIC6□□□□□ -1.45
USP39Q53GS9 AC089984.1-201ENST00000552780 1431 ntTSL 3 BASIC6□□□□□ -1.45
USP39Q53GS9 CRB1-203ENST00000367400 4932 ntAPPRIS P1 TSL 1 (best) BASIC6□□□□□ -1.45
USP39Q53GS9 LINC01504-201ENST00000436054 2078 ntTSL 2 BASIC6□□□□□ -1.45
USP39Q53GS9 KCNT2-203ENST00000451324 3146 ntTSL 1 (best) BASIC6□□□□□ -1.45
USP39Q53GS9 MTND5P29-201ENST00000458676 1807 ntBASIC6□□□□□ -1.45
USP39Q53GS9 PFKFB2-202ENST00000367080 7094 ntAPPRIS P1 TSL 1 (best) BASIC6□□□□□ -1.45
USP39Q53GS9 CLEC4D-201ENST00000299665 1936 ntAPPRIS P1 TSL 1 (best) BASIC6□□□□□ -1.45
USP39Q53GS9 OR4S2-201ENST00000312422 936 ntAPPRIS P1 BASIC6□□□□□ -1.45
USP39Q53GS9 LINC01967-201ENST00000356047 755 ntTSL 5 BASIC6□□□□□ -1.45
USP39Q53GS9 RNU1-59P-201ENST00000364829 162 ntBASIC6□□□□□ -1.45
USP39Q53GS9 MYO3A-202ENST00000376301 727 ntTSL 5 BASIC6□□□□□ -1.45
USP39Q53GS9 FIGN-202ENST00000409634 746 ntTSL 5 BASIC6□□□□□ -1.45
USP39Q53GS9 DPPA2P2-201ENST00000418220 897 ntBASIC6□□□□□ -1.45
USP39Q53GS9 AC016994.1-201ENST00000425419 552 ntTSL 4 BASIC6□□□□□ -1.45
USP39Q53GS9 PRUNEP1-201ENST00000425846 705 ntBASIC6□□□□□ -1.45
USP39Q53GS9 C8orf59P1-201ENST00000429930 303 ntBASIC6□□□□□ -1.45
USP39Q53GS9 MTND2P21-201ENST00000436242 1042 ntBASIC6□□□□□ -1.45
USP39Q53GS9 AL008629.1-201ENST00000438615 184 ntBASIC6□□□□□ -1.45
USP39Q53GS9 AC073052.1-201ENST00000440417 714 ntBASIC6□□□□□ -1.45
USP39Q53GS9 AC093639.1-201ENST00000441026 473 ntTSL 2 BASIC6□□□□□ -1.45
USP39Q53GS9 UBE2D3P4-201ENST00000441973 436 ntBASIC6□□□□□ -1.45
USP39Q53GS9 HCG14-201ENST00000444986 413 ntTSL 2 BASIC6□□□□□ -1.45
USP39Q53GS9 NDUFAF4P2-201ENST00000445374 520 ntBASIC6□□□□□ -1.45
USP39Q53GS9 EXTL2P1-201ENST00000446218 416 ntBASIC6□□□□□ -1.45
USP39Q53GS9 LINC01422-203ENST00000447149 509 ntTSL 4 BASIC6□□□□□ -1.45
USP39Q53GS9 MOB4-207ENST00000448447 1021 ntTSL 2 BASIC6□□□□□ -1.45
USP39Q53GS9 SRGAP3-AS4-201ENST00000449023 377 ntTSL 2 BASIC6□□□□□ -1.45
USP39Q53GS9 NDUFAF4P4-201ENST00000454883 502 ntBASIC6□□□□□ -1.45
USP39Q53GS9 RPL7L1P3-201ENST00000455249 689 ntBASIC6□□□□□ -1.45
USP39Q53GS9 RN7SL610P-201ENST00000463845 291 ntBASIC6□□□□□ -1.45
USP39Q53GS9 CYCSP20-201ENST00000473154 315 ntBASIC6□□□□□ -1.45
USP39Q53GS9 SIAH1P1-201ENST00000479411 923 ntBASIC6□□□□□ -1.45
USP39Q53GS9 AC099521.1-201ENST00000482557 334 ntBASIC6□□□□□ -1.45
USP39Q53GS9 AC108693.1-201ENST00000496068 432 ntBASIC6□□□□□ -1.45
USP39Q53GS9 PCNAP1-201ENST00000505363 709 ntBASIC6□□□□□ -1.45
USP39Q53GS9 RNA5SP34-201ENST00000516887 130 ntBASIC6□□□□□ -1.45
USP39Q53GS9 MTND2P26-201ENST00000528255 1029 ntBASIC6□□□□□ -1.45
USP39Q53GS9 AC022880.1-201ENST00000534017 973 ntBASIC6□□□□□ -1.45
USP39Q53GS9 OR4A6P-201ENST00000534364 970 ntBASIC6□□□□□ -1.45
USP39Q53GS9 PDZD9-203ENST00000537222 1068 ntTSL 3 BASIC6□□□□□ -1.45
USP39Q53GS9 TRDN-205ENST00000546248 1179 ntTSL 1 (best) BASIC6□□□□□ -1.45
USP39Q53GS9 LINC02444-201ENST00000550723 1256 ntTSL 1 (best) BASIC6□□□□□ -1.45
USP39Q53GS9 AC025031.1-201ENST00000552634 562 ntTSL 4 BASIC6□□□□□ -1.45
USP39Q53GS9 AL157756.1-203ENST00000553269 600 ntTSL 3 BASIC6□□□□□ -1.45
USP39Q53GS9 IGBP1P1-201ENST00000554337 1009 ntBASIC6□□□□□ -1.45
USP39Q53GS9 AC009113.2-201ENST00000563182 403 ntTSL 3 BASIC6□□□□□ -1.45
USP39Q53GS9 TMEM159-205ENST00000572599 713 ntAPPRIS P1 TSL 5 BASIC6□□□□□ -1.45
USP39Q53GS9 AC119868.1-202ENST00000584741 347 ntTSL 2 BASIC6□□□□□ -1.45
Retrieved 100 of 98,524 protein–RNA pairs in 186.9 ms