Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 ZCCHC8-201ENST00000536306 2904 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
PTCHD3Q3KNS1 TESPA1-203ENST00000524622 4188 ntAPPRIS ALT2 TSL 1 (best) BASIC5.57□□□□□ -1.52
PTCHD3Q3KNS1 PCGF5-205ENST00000614189 7037 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
PTCHD3Q3KNS1 FCER1G-201ENST00000289902 591 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
PTCHD3Q3KNS1 OR6X1-201ENST00000327930 1058 ntAPPRIS P1 BASIC5.57□□□□□ -1.52
PTCHD3Q3KNS1 GPR52-201ENST00000367685 1088 ntAPPRIS P1 BASIC5.57□□□□□ -1.52
PTCHD3Q3KNS1 MIR130A-201ENST00000385274 89 ntBASIC5.57□□□□□ -1.52
PTCHD3Q3KNS1 TRAV8-7-201ENST00000390456 341 ntAPPRIS P1 BASIC5.57□□□□□ -1.52
PTCHD3Q3KNS1 FAIM-204ENST00000393035 946 ntAPPRIS P3 TSL 1 (best) BASIC5.57□□□□□ -1.52
PTCHD3Q3KNS1 AL021331.1-201ENST00000402817 582 ntBASIC5.57□□□□□ -1.52
PTCHD3Q3KNS1 AC233289.1-201ENST00000403700 508 ntBASIC5.57□□□□□ -1.52
PTCHD3Q3KNS1 RN7SKP97-201ENST00000410966 333 ntBASIC5.57□□□□□ -1.52
PTCHD3Q3KNS1 AL590806.1-201ENST00000415818 853 ntBASIC5.57□□□□□ -1.52
PTCHD3Q3KNS1 AL513325.1-201ENST00000417716 1034 ntBASIC5.57□□□□□ -1.52
PTCHD3Q3KNS1 RNGTTP1-201ENST00000420965 728 ntBASIC5.57□□□□□ -1.52
PTCHD3Q3KNS1 AC006007.1-201ENST00000422084 672 ntTSL 2 BASIC5.57□□□□□ -1.52
PTCHD3Q3KNS1 AL390115.1-201ENST00000425271 423 ntTSL 5 BASIC5.57□□□□□ -1.52
PTCHD3Q3KNS1 AC127526.2-201ENST00000426436 775 ntBASIC5.57□□□□□ -1.52
PTCHD3Q3KNS1 AC074011.1-201ENST00000431376 581 ntTSL 4 BASIC5.57□□□□□ -1.52
PTCHD3Q3KNS1 TMEM196-204ENST00000433641 768 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
PTCHD3Q3KNS1 GTF2IP3-201ENST00000433887 494 ntBASIC5.57□□□□□ -1.52
PTCHD3Q3KNS1 AP000281.1-201ENST00000444036 316 ntBASIC5.57□□□□□ -1.52
PTCHD3Q3KNS1 HSFY3P-201ENST00000444242 1191 ntBASIC5.57□□□□□ -1.52
PTCHD3Q3KNS1 LINC00692-201ENST00000451284 932 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
PTCHD3Q3KNS1 AL157371.1-201ENST00000451910 394 ntTSL 3 BASIC5.57□□□□□ -1.52
PTCHD3Q3KNS1 AC023141.9-201ENST00000458734 412 ntBASIC5.57□□□□□ -1.52
PTCHD3Q3KNS1 RPS23P2-201ENST00000463671 415 ntBASIC5.57□□□□□ -1.52
PTCHD3Q3KNS1 AC092916.1-201ENST00000497896 411 ntTSL 3 BASIC5.57□□□□□ -1.52
PTCHD3Q3KNS1 AC105924.1-201ENST00000504057 339 ntTSL 3 BASIC5.57□□□□□ -1.52
PTCHD3Q3KNS1 AC112206.2-204ENST00000504068 793 ntTSL 3 BASIC5.57□□□□□ -1.52
PTCHD3Q3KNS1 AC005823.2-201ENST00000505978 650 ntTSL 3 BASIC5.57□□□□□ -1.52
PTCHD3Q3KNS1 SSX6-203ENST00000509958 336 ntTSL 3 BASIC5.57□□□□□ -1.52
PTCHD3Q3KNS1 AC074255.1-201ENST00000511259 501 ntBASIC5.57□□□□□ -1.52
PTCHD3Q3KNS1 RNA5SP303-201ENST00000516192 130 ntBASIC5.57□□□□□ -1.52
PTCHD3Q3KNS1 AC107884.2-201ENST00000530963 550 ntTSL 4 BASIC5.57□□□□□ -1.52
PTCHD3Q3KNS1 AC021393.1-201ENST00000531077 433 ntTSL 3 BASIC5.57□□□□□ -1.52
PTCHD3Q3KNS1 AC087897.1-201ENST00000550134 156 ntBASIC5.57□□□□□ -1.52
PTCHD3Q3KNS1 AC092078.1-201ENST00000558370 325 ntTSL 3 BASIC5.57□□□□□ -1.52
PTCHD3Q3KNS1 AL109741.3-201ENST00000561748 592 ntBASIC5.57□□□□□ -1.52
PTCHD3Q3KNS1 AC074050.3-201ENST00000569175 441 ntTSL 4 BASIC5.57□□□□□ -1.52
PTCHD3Q3KNS1 MTND3P13-201ENST00000574391 343 ntBASIC5.57□□□□□ -1.52
PTCHD3Q3KNS1 CCDC58P3-201ENST00000590792 430 ntBASIC5.57□□□□□ -1.52
PTCHD3Q3KNS1 GAS5-AS1-201ENST00000602767 694 ntBASIC5.57□□□□□ -1.52
PTCHD3Q3KNS1 RNA5SP440-201ENST00000612665 119 ntBASIC5.57□□□□□ -1.52
PTCHD3Q3KNS1 AL121890.3-201ENST00000618494 516 ntBASIC5.57□□□□□ -1.52
PTCHD3Q3KNS1 DLG2-AS1_1.1-201ENST00000622319 213 ntBASIC5.57□□□□□ -1.52
PTCHD3Q3KNS1 AC010435.1-201ENST00000623353 1177 ntBASIC5.57□□□□□ -1.52
PTCHD3Q3KNS1 LINC00850-201ENST00000629221 685 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
PTCHD3Q3KNS1 FRG1EP-201ENST00000634469 770 ntBASIC5.57□□□□□ -1.52
PTCHD3Q3KNS1 CU459211.1-201ENST00000635667 749 ntBASIC5.57□□□□□ -1.52
PTCHD3Q3KNS1 AC090897.3-201ENST00000636973 1157 ntBASIC5.57□□□□□ -1.52
PTCHD3Q3KNS1 OR1S2-202ENST00000641683 941 ntAPPRIS P1 BASIC5.57□□□□□ -1.52
PTCHD3Q3KNS1 MAP3K19-204ENST00000392915 5030 ntAPPRIS P3 TSL 5 BASIC5.57□□□□□ -1.52
PTCHD3Q3KNS1 MPDZ-208ENST00000447879 6262 ntAPPRIS ALT2 TSL 1 (best) BASIC5.57□□□□□ -1.52
PTCHD3Q3KNS1 HIF1AN-201ENST00000299163 13011 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
PTCHD3Q3KNS1 DDX3Y-201ENST00000336079 4445 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
PTCHD3Q3KNS1 DYNC1I2-202ENST00000397119 2604 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
PTCHD3Q3KNS1 KDM4C-214ENST00000536108 3406 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
PTCHD3Q3KNS1 CHMP1B2P-202ENST00000614414 6813 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
PTCHD3Q3KNS1 RALYL-211ENST00000523850 1684 ntTSL 2 BASIC5.56□□□□□ -1.52
PTCHD3Q3KNS1 FCRL5-202ENST00000368189 4424 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
PTCHD3Q3KNS1 MTND4P8-201ENST00000514997 1362 ntBASIC5.56□□□□□ -1.52
PTCHD3Q3KNS1 CPED1-203ENST00000423795 2189 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
PTCHD3Q3KNS1 HHLA2-209ENST00000489514 2406 ntAPPRIS P3 TSL 1 (best) BASIC5.56□□□□□ -1.52
PTCHD3Q3KNS1 KCNAB1-205ENST00000471742 3301 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
PTCHD3Q3KNS1 HOMER1-201ENST00000282260 774 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
PTCHD3Q3KNS1 OR51Q1-201ENST00000300778 1096 ntAPPRIS P1 BASIC5.56□□□□□ -1.52
PTCHD3Q3KNS1 PRKACB-203ENST00000370684 869 ntTSL 5 BASIC5.56□□□□□ -1.52
PTCHD3Q3KNS1 RNU1-136P-201ENST00000384181 164 ntBASIC5.56□□□□□ -1.52
PTCHD3Q3KNS1 CCL8-201ENST00000394620 1261 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
PTCHD3Q3KNS1 HMGB1P20-201ENST00000402555 677 ntBASIC5.56□□□□□ -1.52
PTCHD3Q3KNS1 PGAP1-203ENST00000409188 1246 ntTSL 2 BASIC5.56□□□□□ -1.52
PTCHD3Q3KNS1 AC073071.1-201ENST00000412410 388 ntTSL 3 BASIC5.56□□□□□ -1.52
PTCHD3Q3KNS1 RPS24P7-201ENST00000416921 246 ntBASIC5.56□□□□□ -1.52
PTCHD3Q3KNS1 AL391839.1-201ENST00000417447 265 ntTSL 2 BASIC5.56□□□□□ -1.52
PTCHD3Q3KNS1 MTND4P3-201ENST00000417829 541 ntBASIC5.56□□□□□ -1.52
PTCHD3Q3KNS1 LINC01065-201ENST00000417989 577 ntTSL 3 BASIC5.56□□□□□ -1.52
PTCHD3Q3KNS1 AK4P4-201ENST00000419465 646 ntBASIC5.56□□□□□ -1.52
PTCHD3Q3KNS1 AC013401.1-202ENST00000422017 626 ntTSL 2 BASIC5.56□□□□□ -1.52
PTCHD3Q3KNS1 AC017074.2-201ENST00000439382 607 ntTSL 2 BASIC5.56□□□□□ -1.52
PTCHD3Q3KNS1 PTGES3P1-201ENST00000439531 483 ntBASIC5.56□□□□□ -1.52
PTCHD3Q3KNS1 AL139120.1-201ENST00000443652 358 ntTSL 3 BASIC5.56□□□□□ -1.52
PTCHD3Q3KNS1 MRPL35P2-201ENST00000448009 511 ntBASIC5.56□□□□□ -1.52
PTCHD3Q3KNS1 RPS17P15-201ENST00000475609 349 ntBASIC5.56□□□□□ -1.52
PTCHD3Q3KNS1 RPS7P6-201ENST00000485777 579 ntBASIC5.56□□□□□ -1.52
PTCHD3Q3KNS1 RPL32P33-201ENST00000487023 394 ntBASIC5.56□□□□□ -1.52
PTCHD3Q3KNS1 AC079203.1-201ENST00000487972 404 ntBASIC5.56□□□□□ -1.52
PTCHD3Q3KNS1 RN7SL284P-201ENST00000498823 275 ntBASIC5.56□□□□□ -1.52
PTCHD3Q3KNS1 PGRMC2-203ENST00000503588 818 ntTSL 4 BASIC5.56□□□□□ -1.52
PTCHD3Q3KNS1 NENFP3-201ENST00000503735 313 ntBASIC5.56□□□□□ -1.52
PTCHD3Q3KNS1 AC093292.1-201ENST00000505050 449 ntTSL 3 BASIC5.56□□□□□ -1.52
PTCHD3Q3KNS1 HOMER1-204ENST00000508576 815 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
PTCHD3Q3KNS1 AC109481.1-201ENST00000509173 282 ntBASIC5.56□□□□□ -1.52
PTCHD3Q3KNS1 AC008592.4-201ENST00000509999 450 ntTSL 3 BASIC5.56□□□□□ -1.52
PTCHD3Q3KNS1 AC011389.1-203ENST00000513790 573 ntTSL 4 BASIC5.56□□□□□ -1.52
PTCHD3Q3KNS1 RNU6-1308P-201ENST00000516817 103 ntBASIC5.56□□□□□ -1.52
PTCHD3Q3KNS1 AC021678.3-201ENST00000517893 476 ntBASIC5.56□□□□□ -1.52
PTCHD3Q3KNS1 AC048387.1-201ENST00000518428 494 ntTSL 3 BASIC5.56□□□□□ -1.52
PTCHD3Q3KNS1 AC078906.1-201ENST00000523602 798 ntTSL 3 BASIC5.56□□□□□ -1.52
PTCHD3Q3KNS1 NDUFS5P6-201ENST00000529136 295 ntBASIC5.56□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 75.2 ms