Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 SERPINA7-202ENST00000372563 1600 ntAPPRIS P1 TSL 5 BASIC6.9□□□□□ -1.3
MSH6P52701 CDH10-201ENST00000264463 3438 ntAPPRIS P1 TSL 1 (best) BASIC6.9□□□□□ -1.3
MSH6P52701 VPS41-203ENST00000395969 3181 ntTSL 5 BASIC6.9□□□□□ -1.3
MSH6P52701 USP28-213ENST00000544967 3498 ntTSL 1 (best) BASIC6.9□□□□□ -1.3
MSH6P52701 DCLK1-204ENST00000379893 4612 ntTSL 2 BASIC6.9□□□□□ -1.3
MSH6P52701 LINC01981-201ENST00000432163 2833 ntTSL 1 (best) BASIC6.9□□□□□ -1.3
MSH6P52701 S100A9-201ENST00000368738 577 ntAPPRIS P1 TSL 1 (best) BASIC6.9□□□□□ -1.31
MSH6P52701 OR6C69P-201ENST00000394268 893 ntBASIC6.9□□□□□ -1.31
MSH6P52701 OR2A25-201ENST00000408898 1014 ntAPPRIS P1 BASIC6.9□□□□□ -1.31
MSH6P52701 AL451062.2-201ENST00000427515 271 ntBASIC6.9□□□□□ -1.31
MSH6P52701 MRPS21P3-201ENST00000436696 262 ntBASIC6.9□□□□□ -1.31
MSH6P52701 AC000124.1-201ENST00000448311 957 ntTSL 2 BASIC6.9□□□□□ -1.31
MSH6P52701 TRAPPC2-204ENST00000458511 678 ntTSL 5 BASIC6.9□□□□□ -1.31
MSH6P52701 AC027627.1-201ENST00000506895 753 ntTSL 3 BASIC6.9□□□□□ -1.31
MSH6P52701 AC098976.1-201ENST00000513014 541 ntBASIC6.9□□□□□ -1.31
MSH6P52701 SEPT10P1-201ENST00000517342 1162 ntBASIC6.9□□□□□ -1.31
MSH6P52701 AC136424.2-201ENST00000522582 563 ntTSL 4 BASIC6.9□□□□□ -1.31
MSH6P52701 MED28P5-201ENST00000528254 438 ntBASIC6.9□□□□□ -1.31
MSH6P52701 GABARAPL1-212ENST00000543602 653 ntTSL 5 BASIC6.9□□□□□ -1.31
MSH6P52701 MIR4429-201ENST00000580105 73 ntBASIC6.9□□□□□ -1.31
MSH6P52701 CDON-206ENST00000531738 5803 ntTSL 1 (best) BASIC6.9□□□□□ -1.31
MSH6P52701 PTK2-213ENST00000519465 3279 ntTSL 1 (best) BASIC6.9□□□□□ -1.31
MSH6P52701 AC239868.2-201ENST00000564237 4527 ntBASIC6.9□□□□□ -1.31
MSH6P52701 AL731566.1-201ENST00000620490 1937 ntBASIC6.9□□□□□ -1.31
MSH6P52701 LINC02355-201ENST00000503100 2520 ntTSL 1 (best) BASIC6.9□□□□□ -1.31
MSH6P52701 ERVW-1-201ENST00000493463 2925 ntAPPRIS P1 BASIC6.9□□□□□ -1.31
MSH6P52701 NPSR1-AS1-202ENST00000419766 4821 ntTSL 1 (best) BASIC6.9□□□□□ -1.31
MSH6P52701 IFI16-202ENST00000340979 2732 ntTSL 5 BASIC6.89□□□□□ -1.31
MSH6P52701 IFI16-204ENST00000368131 2734 ntAPPRIS P3 TSL 1 (best) BASIC6.89□□□□□ -1.31
MSH6P52701 VRK2-206ENST00000435505 2446 ntAPPRIS P3 TSL 1 (best) BASIC6.89□□□□□ -1.31
MSH6P52701 SYCP2L-207ENST00000543878 2436 ntAPPRIS ALT2 TSL 5 BASIC6.89□□□□□ -1.31
MSH6P52701 FMN1-212ENST00000616417 13529 ntAPPRIS ALT2 TSL 5 BASIC6.89□□□□□ -1.31
MSH6P52701 PIGN-239ENST00000639902 4439 ntTSL 5 BASIC6.89□□□□□ -1.31
MSH6P52701 INTS6-203ENST00000442263 15428 ntTSL 1 (best) BASIC6.89□□□□□ -1.31
MSH6P52701 AC006210.2-201ENST00000367074 1545 ntBASIC6.89□□□□□ -1.31
MSH6P52701 TRPM6-202ENST00000360774 8425 ntTSL 1 (best) BASIC6.89□□□□□ -1.31
MSH6P52701 DAZ1-205ENST00000540248 3268 ntTSL 5 BASIC6.89□□□□□ -1.31
MSH6P52701 TRAPPC13-201ENST00000231526 2715 ntAPPRIS ALT1 TSL 5 BASIC6.89□□□□□ -1.31
MSH6P52701 MYO3A-203ENST00000376302 2723 ntTSL 1 (best) BASIC6.89□□□□□ -1.31
MSH6P52701 SNORA2.3-201ENST00000383920 135 ntBASIC6.89□□□□□ -1.31
MSH6P52701 TRAJ38-201ENST00000390499 62 ntAPPRIS P1 BASIC6.89□□□□□ -1.31
MSH6P52701 U3.30-201ENST00000391308 210 ntBASIC6.89□□□□□ -1.31
MSH6P52701 AL136979.1-201ENST00000421645 1120 ntTSL 3 BASIC6.89□□□□□ -1.31
MSH6P52701 AL451070.1-201ENST00000430143 439 ntTSL 5 BASIC6.89□□□□□ -1.31
MSH6P52701 CBX1P1-201ENST00000440184 427 ntBASIC6.89□□□□□ -1.31
MSH6P52701 AP000402.1-201ENST00000446404 540 ntTSL 3 BASIC6.89□□□□□ -1.31
MSH6P52701 EEF1A1P1-201ENST00000447052 739 ntBASIC6.89□□□□□ -1.31
MSH6P52701 RPS5P7-201ENST00000456664 608 ntBASIC6.89□□□□□ -1.31
MSH6P52701 SNORA84-201ENST00000459229 133 ntBASIC6.89□□□□□ -1.31
MSH6P52701 SLC9A9-AS2-201ENST00000490153 327 ntTSL 5 BASIC6.89□□□□□ -1.31
MSH6P52701 RNU2-30P-201ENST00000516209 141 ntBASIC6.89□□□□□ -1.31
MSH6P52701 AC068831.4-201ENST00000556118 109 ntBASIC6.89□□□□□ -1.31
MSH6P52701 RPS15A-203ENST00000563390 525 ntAPPRIS P1 TSL 1 (best) BASIC6.89□□□□□ -1.31
MSH6P52701 LINC00904-201ENST00000604453 471 ntTSL 2 BASIC6.89□□□□□ -1.31
MSH6P52701 MIR6133-201ENST00000617057 108 ntBASIC6.89□□□□□ -1.31
MSH6P52701 AL355306.2-208ENST00000634868 1251 ntTSL 5 BASIC6.89□□□□□ -1.31
MSH6P52701 OR52N4-202ENST00000641350 1276 ntAPPRIS P1 BASIC6.89□□□□□ -1.31
MSH6P52701 MUC17-201ENST00000306151 14247 ntAPPRIS P1 TSL 1 (best) BASIC6.89□□□□□ -1.31
MSH6P52701 LIMA1-203ENST00000547825 3920 ntAPPRIS ALT2 TSL 1 (best) BASIC6.89□□□□□ -1.31
MSH6P52701 PPFIBP1-201ENST00000228425 5933 ntAPPRIS P1 TSL 1 (best) BASIC6.89□□□□□ -1.31
MSH6P52701 APAF1-205ENST00000547045 3744 ntAPPRIS ALT1 TSL 1 (best) BASIC6.89□□□□□ -1.31
MSH6P52701 TRPC4-203ENST00000358477 2955 ntTSL 1 (best) BASIC6.89□□□□□ -1.31
MSH6P52701 PDGFRA-206ENST00000508170 2202 ntTSL 1 (best) BASIC6.89□□□□□ -1.31
MSH6P52701 OR52E5-201ENST00000610445 2244 ntAPPRIS P1 BASIC6.89□□□□□ -1.31
MSH6P52701 MYB-226ENST00000528774 2277 ntAPPRIS ALT1 TSL 1 (best) BASIC6.89□□□□□ -1.31
MSH6P52701 LTA4H-202ENST00000413268 1908 ntTSL 2 BASIC6.88□□□□□ -1.31
MSH6P52701 AC120338.1-201ENST00000625074 1541 ntBASIC6.88□□□□□ -1.31
MSH6P52701 LCMT1-AS2-202ENST00000565214 5666 ntBASIC6.88□□□□□ -1.31
MSH6P52701 AP000641.1-201ENST00000531988 1639 ntBASIC6.88□□□□□ -1.31
MSH6P52701 ORMDL1-201ENST00000325795 2692 ntAPPRIS P1 TSL 1 (best) BASIC6.88□□□□□ -1.31
MSH6P52701 ZNF682-207ENST00000595736 1710 ntTSL 2 BASIC6.88□□□□□ -1.31
MSH6P52701 SERPINB7-202ENST00000398019 2203 ntAPPRIS P1 TSL 1 (best) BASIC6.88□□□□□ -1.31
MSH6P52701 C2orf16-201ENST00000408964 6200 ntAPPRIS P2 BASIC6.88□□□□□ -1.31
MSH6P52701 IGSF6-201ENST00000268389 2785 ntAPPRIS P1 TSL 1 (best) BASIC6.88□□□□□ -1.31
MSH6P52701 SPRR2G-201ENST00000368748 568 ntAPPRIS P1 TSL 1 (best) BASIC6.88□□□□□ -1.31
MSH6P52701 TRAV16-201ENST00000390444 329 ntAPPRIS P1 BASIC6.88□□□□□ -1.31
MSH6P52701 ATP5HP3-201ENST00000396994 486 ntBASIC6.88□□□□□ -1.31
MSH6P52701 LINC01881-201ENST00000416103 412 ntBASIC6.88□□□□□ -1.31
MSH6P52701 LINC01850-201ENST00000429916 357 ntTSL 3 BASIC6.88□□□□□ -1.31
MSH6P52701 TEX41-206ENST00000432608 661 ntTSL 3 BASIC6.88□□□□□ -1.31
MSH6P52701 FO393401.1-201ENST00000453914 600 ntTSL 3 BASIC6.88□□□□□ -1.31
MSH6P52701 AC012629.1-201ENST00000503953 342 ntTSL 3 BASIC6.88□□□□□ -1.31
MSH6P52701 RNA5SP392-201ENST00000516905 112 ntBASIC6.88□□□□□ -1.31
MSH6P52701 AC022784.4-201ENST00000518589 422 ntTSL 1 (best) BASIC6.88□□□□□ -1.31
MSH6P52701 AC026688.1-201ENST00000520639 1168 ntBASIC6.88□□□□□ -1.31
MSH6P52701 CYCSP29-201ENST00000533731 318 ntBASIC6.88□□□□□ -1.31
MSH6P52701 AC002091.1-201ENST00000578788 557 ntTSL 2 BASIC6.88□□□□□ -1.31
MSH6P52701 AC002044.3-201ENST00000623314 541 ntBASIC6.88□□□□□ -1.31
MSH6P52701 AC104461.1-201ENST00000637430 817 ntTSL 5 BASIC6.88□□□□□ -1.31
MSH6P52701 CLCA1-201ENST00000234701 3310 ntAPPRIS P1 TSL 1 (best) BASIC6.88□□□□□ -1.31
MSH6P52701 FAM184A-204ENST00000368475 3392 ntTSL 2 BASIC6.88□□□□□ -1.31
MSH6P52701 ADCY10-201ENST00000367848 5055 ntTSL 1 (best) BASIC6.88□□□□□ -1.31
MSH6P52701 DYNC1I2-225ENST00000508530 2494 ntAPPRIS ALT1 TSL 1 (best) BASIC6.88□□□□□ -1.31
MSH6P52701 AL354696.2-201ENST00000619407 1910 ntTSL 2 BASIC6.88□□□□□ -1.31
MSH6P52701 MAPRE2-202ENST00000413393 4173 ntAPPRIS ALT1 TSL 5 BASIC6.88□□□□□ -1.31
MSH6P52701 MTERF1-201ENST00000351870 1997 ntAPPRIS P3 TSL 1 (best) BASIC6.88□□□□□ -1.31
MSH6P52701 RGSL1-201ENST00000294854 3696 ntAPPRIS P1 TSL 1 (best) BASIC6.88□□□□□ -1.31
MSH6P52701 DNAH3-201ENST00000261383 12394 ntAPPRIS P1 TSL 1 (best) BASIC6.88□□□□□ -1.31
MSH6P52701 GSTM2-206ENST00000442650 1478 ntTSL 5 BASIC6.88□□□□□ -1.31
MSH6P52701 R3HDM1-202ENST00000409478 4272 ntTSL 1 (best) BASIC6.88□□□□□ -1.31
Retrieved 100 of 98,524 protein–RNA pairs in 81.1 ms