Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 RNU7-27P-201ENST00000459281 62 ntBASIC5.23□□□□□ -1.57
HNF4AP41235 CCDC75P1-201ENST00000469247 791 ntBASIC5.23□□□□□ -1.57
HNF4AP41235 RPL35AP19-201ENST00000469425 329 ntBASIC5.23□□□□□ -1.57
HNF4AP41235 AC092754.1-201ENST00000472975 479 ntBASIC5.23□□□□□ -1.57
HNF4AP41235 COX6B1P2-201ENST00000489624 230 ntBASIC5.23□□□□□ -1.57
HNF4AP41235 AC023424.1-201ENST00000496058 459 ntBASIC5.23□□□□□ -1.57
HNF4AP41235 RN7SL466P-201ENST00000497546 295 ntBASIC5.23□□□□□ -1.57
HNF4AP41235 HMGB1P44-201ENST00000508597 572 ntBASIC5.23□□□□□ -1.57
HNF4AP41235 AC079226.2-201ENST00000509283 518 ntTSL 2 BASIC5.23□□□□□ -1.57
HNF4AP41235 AC108120.2-201ENST00000512973 294 ntBASIC5.23□□□□□ -1.57
HNF4AP41235 HMGN1P9-201ENST00000515212 298 ntBASIC5.23□□□□□ -1.57
HNF4AP41235 AC124784.1-201ENST00000552426 571 ntTSL 3 BASIC5.23□□□□□ -1.57
HNF4AP41235 PPIAL4F-202ENST00000581138 660 ntAPPRIS P1 BASIC5.23□□□□□ -1.57
HNF4AP41235 PPIAL4E-201ENST00000581164 785 ntAPPRIS P1 BASIC5.23□□□□□ -1.57
HNF4AP41235 ABHD15-AS1-201ENST00000581474 187 ntTSL 5 BASIC5.23□□□□□ -1.57
HNF4AP41235 RN7SL356P-201ENST00000582228 248 ntBASIC5.23□□□□□ -1.57
HNF4AP41235 AC004862.1-203ENST00000598433 1020 ntTSL 5 BASIC5.23□□□□□ -1.57
HNF4AP41235 AP000769.2-201ENST00000602344 396 ntBASIC5.23□□□□□ -1.57
HNF4AP41235 AC244107.2-201ENST00000611773 76 ntBASIC5.23□□□□□ -1.57
HNF4AP41235 AC116447.1-201ENST00000613153 453 ntBASIC5.23□□□□□ -1.57
HNF4AP41235 AC245041.2-202ENST00000613389 493 ntTSL 5 BASIC5.23□□□□□ -1.57
HNF4AP41235 PXT1-202ENST00000619547 619 ntAPPRIS ALT2 TSL 1 (best) BASIC5.23□□□□□ -1.57
HNF4AP41235 FP236315.3-201ENST00000623587 307 ntTSL 2 BASIC5.23□□□□□ -1.57
HNF4AP41235 AC074387.1-201ENST00000632044 823 ntTSL 2 BASIC5.23□□□□□ -1.57
HNF4AP41235 A1CF-205ENST00000374001 9221 ntAPPRIS ALT1 TSL 5 BASIC5.23□□□□□ -1.57
HNF4AP41235 DNA2-201ENST00000358410 4208 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
HNF4AP41235 LINC01553-203ENST00000521074 4329 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
HNF4AP41235 AC105411.1-201ENST00000568776 1470 ntTSL 4 BASIC5.23□□□□□ -1.57
HNF4AP41235 DCLK1-204ENST00000379893 4612 ntTSL 2 BASIC5.23□□□□□ -1.57
HNF4AP41235 AL451142.2-201ENST00000429076 2090 ntBASIC5.23□□□□□ -1.57
HNF4AP41235 PGM3-211ENST00000512866 2013 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
HNF4AP41235 AC090971.4-201ENST00000560291 1800 ntBASIC5.23□□□□□ -1.57
HNF4AP41235 AMY1C-201ENST00000370079 1632 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
HNF4AP41235 AC079298.1-201ENST00000625026 1619 ntBASIC5.23□□□□□ -1.57
HNF4AP41235 OR2AP1-202ENST00000641114 1548 ntAPPRIS P1 BASIC5.23□□□□□ -1.57
HNF4AP41235 OR8D4-201ENST00000321355 1331 ntAPPRIS P1 BASIC5.23□□□□□ -1.57
HNF4AP41235 PRPF4B-201ENST00000337659 4415 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
HNF4AP41235 AMY2B-201ENST00000361355 2181 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
HNF4AP41235 RPGRIP1L-201ENST00000262135 8195 ntAPPRIS P3 TSL 5 BASIC5.22□□□□□ -1.57
HNF4AP41235 AL445623.2-201ENST00000640307 4805 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
HNF4AP41235 ZNF679-202ENST00000421025 1567 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
HNF4AP41235 ZNF83-204ENST00000545872 2633 ntAPPRIS P1 TSL 2 BASIC5.22□□□□□ -1.57
HNF4AP41235 ZNF639-210ENST00000621687 1458 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
HNF4AP41235 CASC19-201ENST00000500112 5735 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
HNF4AP41235 ITGB3BP-201ENST00000271002 948 ntAPPRIS P3 TSL 1 (best) BASIC5.22□□□□□ -1.57
HNF4AP41235 OR8K1-201ENST00000279783 1087 ntAPPRIS P1 BASIC5.22□□□□□ -1.57
HNF4AP41235 PLSCR2-201ENST00000336685 1272 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
HNF4AP41235 RNU1-19P-201ENST00000363306 165 ntBASIC5.22□□□□□ -1.57
HNF4AP41235 RNA5SP241-201ENST00000391326 114 ntBASIC5.22□□□□□ -1.57
HNF4AP41235 AC092111.3-201ENST00000402465 496 ntAPPRIS P1 TSL 2 BASIC5.22□□□□□ -1.57
HNF4AP41235 RNU6-603P-201ENST00000411403 107 ntBASIC5.22□□□□□ -1.57
HNF4AP41235 AC073257.2-201ENST00000413991 528 ntTSL 3 BASIC5.22□□□□□ -1.57
HNF4AP41235 TRAPPC2P10-201ENST00000415662 323 ntBASIC5.22□□□□□ -1.57
HNF4AP41235 TRGV6-201ENST00000417928 299 ntBASIC5.22□□□□□ -1.57
HNF4AP41235 ITGA9-AS1-202ENST00000420870 581 ntTSL 4 BASIC5.22□□□□□ -1.57
HNF4AP41235 LINC00894-203ENST00000432696 298 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
HNF4AP41235 BTBD7P2-201ENST00000441962 620 ntBASIC5.22□□□□□ -1.57
HNF4AP41235 RPS27AP2-201ENST00000457576 465 ntBASIC5.22□□□□□ -1.57
HNF4AP41235 RNU6-1218P-201ENST00000458990 108 ntBASIC5.22□□□□□ -1.57
HNF4AP41235 AC090638.1-201ENST00000498296 909 ntBASIC5.22□□□□□ -1.57
HNF4AP41235 IGBP1P4-201ENST00000503202 879 ntBASIC5.22□□□□□ -1.57
HNF4AP41235 AC010627.1-201ENST00000503819 1294 ntBASIC5.22□□□□□ -1.57
HNF4AP41235 RNU6-1308P-201ENST00000516817 103 ntBASIC5.22□□□□□ -1.57
HNF4AP41235 AC022360.1-201ENST00000521058 340 ntBASIC5.22□□□□□ -1.57
HNF4AP41235 OR8G3P-201ENST00000533406 921 ntBASIC5.22□□□□□ -1.57
HNF4AP41235 AC127381.1-201ENST00000555979 939 ntBASIC5.22□□□□□ -1.57
HNF4AP41235 AC015660.3-201ENST00000559569 198 ntTSL 3 BASIC5.22□□□□□ -1.57
HNF4AP41235 AC015720.2-201ENST00000567709 334 ntBASIC5.22□□□□□ -1.57
HNF4AP41235 LINC00511-212ENST00000581183 657 ntTSL 3 BASIC5.22□□□□□ -1.57
HNF4AP41235 SS18L2P2-201ENST00000583960 235 ntBASIC5.22□□□□□ -1.57
HNF4AP41235 AC011990.1-201ENST00000592809 734 ntTSL 3 BASIC5.22□□□□□ -1.57
HNF4AP41235 Z98949.1-203ENST00000597284 851 ntTSL 5 BASIC5.22□□□□□ -1.57
HNF4AP41235 AL589674.2-201ENST00000604304 337 ntBASIC5.22□□□□□ -1.57
HNF4AP41235 5_8S_rRNA.1-201ENST00000614365 152 ntBASIC5.22□□□□□ -1.57
HNF4AP41235 Z94721.2-201ENST00000609590 5310 ntTSL 2 BASIC5.22□□□□□ -1.57
HNF4AP41235 DMTF1-204ENST00000413276 3548 ntTSL 5 BASIC5.22□□□□□ -1.57
HNF4AP41235 ANKRD36B-202ENST00000359901 4297 ntAPPRIS P1 TSL 5 BASIC5.22□□□□□ -1.57
HNF4AP41235 SNX10-202ENST00000396376 2491 ntAPPRIS P2 TSL 1 (best) BASIC5.22□□□□□ -1.57
HNF4AP41235 ZNF573-208ENST00000536220 2257 ntAPPRIS P1 TSL 3 BASIC5.22□□□□□ -1.57
HNF4AP41235 KCNRG-201ENST00000312942 1527 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
HNF4AP41235 TSPAN8-202ENST00000393330 1516 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
HNF4AP41235 AL359715.4-201ENST00000606629 1436 ntBASIC5.22□□□□□ -1.57
HNF4AP41235 GRID2-208ENST00000611049 4844 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
HNF4AP41235 CTAGE5-207ENST00000396165 3071 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
HNF4AP41235 SLC16A9-201ENST00000395347 3646 ntAPPRIS P1 TSL 2 BASIC5.22□□□□□ -1.57
HNF4AP41235 CASC1-202ENST00000354189 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC5.22□□□□□ -1.57
HNF4AP41235 CEP162-207ENST00000617909 5095 ntTSL 5 BASIC5.22□□□□□ -1.57
HNF4AP41235 POPDC3-201ENST00000254765 1345 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
HNF4AP41235 PRLR-203ENST00000348262 1339 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
HNF4AP41235 ZNF571-201ENST00000328550 4113 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.57
HNF4AP41235 PHACTR4-201ENST00000373836 3107 ntAPPRIS P4 TSL 5 BASIC5.21□□□□□ -1.57
HNF4AP41235 ZNF569-203ENST00000392150 1918 ntTSL 1 (best) BASIC5.21□□□□□ -1.57
HNF4AP41235 ADGRL3-217ENST00000514591 6297 ntAPPRIS P2 TSL 5 BASIC5.21□□□□□ -1.58
HNF4AP41235 VWC2L-202ENST00000427124 4480 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
HNF4AP41235 A1CF-207ENST00000395495 9400 ntTSL 5 BASIC5.21□□□□□ -1.58
HNF4AP41235 DNAJC16-210ENST00000616884 5882 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
HNF4AP41235 RNF20-202ENST00000389120 3940 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
HNF4AP41235 PCAT14-202ENST00000627127 3935 ntBASIC5.21□□□□□ -1.58
HNF4AP41235 NAP1L4P1-201ENST00000319092 1157 ntBASIC5.21□□□□□ -1.58
HNF4AP41235 C10orf120-201ENST00000329446 1064 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 108.5 ms