Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 PQLC2L-202ENST00000426338 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC4.75□□□□□ -1.65
SDC1P18827 YY1P1-201ENST00000427625 668 ntBASIC4.75□□□□□ -1.65
SDC1P18827 AC009478.1-201ENST00000429816 562 ntTSL 3 BASIC4.75□□□□□ -1.65
SDC1P18827 AC096644.1-201ENST00000446169 390 ntTSL 3 BASIC4.75□□□□□ -1.65
SDC1P18827 NDUFB2-213ENST00000476470 482 ntTSL 5 BASIC4.75□□□□□ -1.65
SDC1P18827 OR2AO1P-201ENST00000476497 403 ntBASIC4.75□□□□□ -1.65
SDC1P18827 RPL5P22-201ENST00000480199 884 ntBASIC4.75□□□□□ -1.65
SDC1P18827 SH3GLB1-202ENST00000482504 1199 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
SDC1P18827 EEF1A1P25-201ENST00000495704 1267 ntBASIC4.75□□□□□ -1.65
SDC1P18827 RNA5SP249-201ENST00000516127 99 ntBASIC4.75□□□□□ -1.65
SDC1P18827 EIF4A2P5-201ENST00000529914 499 ntBASIC4.75□□□□□ -1.65
SDC1P18827 ST3GAL3-233ENST00000531816 344 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
SDC1P18827 SDHAF2-208ENST00000543265 438 ntTSL 5 BASIC4.75□□□□□ -1.65
SDC1P18827 RN7SL435P-201ENST00000584418 282 ntBASIC4.75□□□□□ -1.65
SDC1P18827 FAM60CP-201ENST00000591086 664 ntBASIC4.75□□□□□ -1.65
SDC1P18827 AC099494.2-201ENST00000623371 978 ntBASIC4.75□□□□□ -1.65
SDC1P18827 AL359094.1-201ENST00000627944 566 ntTSL 5 BASIC4.75□□□□□ -1.65
SDC1P18827 HERC4-205ENST00000412272 4211 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
SDC1P18827 CEP97-201ENST00000341893 8361 ntAPPRIS P3 TSL 1 (best) BASIC4.75□□□□□ -1.65
SDC1P18827 TCF4-290ENST00000638154 7801 ntAPPRIS ALT1 TSL 5 BASIC4.75□□□□□ -1.65
SDC1P18827 FRYL-209ENST00000506685 1940 ntTSL 5 BASIC4.75□□□□□ -1.65
SDC1P18827 PATJ-213ENST00000613764 4172 ntTSL 5 BASIC4.75□□□□□ -1.65
SDC1P18827 ERMN-201ENST00000397283 3760 ntTSL 2 BASIC4.75□□□□□ -1.65
SDC1P18827 NCOA3-201ENST00000371997 6750 ntAPPRIS ALT2 TSL 1 (best) BASIC4.75□□□□□ -1.65
SDC1P18827 RNF217-202ENST00000368414 1771 ntTSL 2 BASIC4.75□□□□□ -1.65
SDC1P18827 USP45-204ENST00000369233 2514 ntTSL 5 BASIC4.75□□□□□ -1.65
SDC1P18827 SERPINA9-204ENST00000424550 1462 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
SDC1P18827 EYA1-203ENST00000388740 3788 ntTSL 5 BASIC4.75□□□□□ -1.65
SDC1P18827 PSG7-202ENST00000446844 2227 ntAPPRIS P5 TSL 5 BASIC4.74□□□□□ -1.65
SDC1P18827 NXT2-201ENST00000218004 2692 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
SDC1P18827 C2orf66-201ENST00000342506 1669 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
SDC1P18827 AC009643.2-201ENST00000603543 1448 ntBASIC4.74□□□□□ -1.65
SDC1P18827 FBXL13-207ENST00000455112 2274 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
SDC1P18827 CREM-202ENST00000342105 1541 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
SDC1P18827 AC011503.2-201ENST00000594230 1500 ntBASIC4.74□□□□□ -1.65
SDC1P18827 PIH1D2-201ENST00000280350 1241 ntAPPRIS P1 TSL 5 BASIC4.74□□□□□ -1.65
SDC1P18827 AMELX-201ENST00000348912 737 ntTSL 5 BASIC4.74□□□□□ -1.65
SDC1P18827 RNU6-697P-201ENST00000363348 107 ntBASIC4.74□□□□□ -1.65
SDC1P18827 KRTAP3-2-201ENST00000391587 702 ntAPPRIS P1 BASIC4.74□□□□□ -1.65
SDC1P18827 AC005522.1-201ENST00000395416 346 ntBASIC4.74□□□□□ -1.65
SDC1P18827 AL512422.1-201ENST00000407033 553 ntBASIC4.74□□□□□ -1.65
SDC1P18827 LINC01821-201ENST00000419786 1084 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
SDC1P18827 DDX39BP1-205ENST00000422507 192 ntBASIC4.74□□□□□ -1.65
SDC1P18827 PIH1D2-202ENST00000431456 1245 ntTSL 5 BASIC4.74□□□□□ -1.65
SDC1P18827 Z85994.2-201ENST00000434327 452 ntBASIC4.74□□□□□ -1.65
SDC1P18827 SCAND3P1-201ENST00000439854 1060 ntBASIC4.74□□□□□ -1.65
SDC1P18827 XKRYP6-201ENST00000440468 1116 ntBASIC4.74□□□□□ -1.65
SDC1P18827 AL391987.1-201ENST00000441025 200 ntBASIC4.74□□□□□ -1.65
SDC1P18827 XKRYP3-201ENST00000442113 1116 ntBASIC4.74□□□□□ -1.65
SDC1P18827 RAD1P2-201ENST00000446414 663 ntBASIC4.74□□□□□ -1.65
SDC1P18827 AC048351.1-202ENST00000449483 735 ntTSL 3 BASIC4.74□□□□□ -1.65
SDC1P18827 FAR2P1-206ENST00000449736 709 ntBASIC4.74□□□□□ -1.65
SDC1P18827 THOC7-AS1-201ENST00000468961 673 ntTSL 2 BASIC4.74□□□□□ -1.65
SDC1P18827 ALG13-211ENST00000473389 693 ntTSL 2 BASIC4.74□□□□□ -1.65
SDC1P18827 ERVH-1-201ENST00000507666 639 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
SDC1P18827 AC010425.1-201ENST00000511734 554 ntTSL 4 BASIC4.74□□□□□ -1.65
SDC1P18827 UQCRB-209ENST00000523920 695 ntTSL 5 BASIC4.74□□□□□ -1.65
SDC1P18827 AP003557.1-201ENST00000531715 585 ntTSL 3 BASIC4.74□□□□□ -1.65
SDC1P18827 AC137590.1-201ENST00000542422 495 ntTSL 3 BASIC4.74□□□□□ -1.65
SDC1P18827 AC011595.3-201ENST00000546699 632 ntTSL 3 BASIC4.74□□□□□ -1.65
SDC1P18827 OR11J2P-201ENST00000555298 907 ntBASIC4.74□□□□□ -1.65
SDC1P18827 AC015660.2-201ENST00000561362 323 ntTSL 3 BASIC4.74□□□□□ -1.65
SDC1P18827 AC007342.5-201ENST00000571340 2142 ntBASIC4.74□□□□□ -1.65
SDC1P18827 CYCSP40-201ENST00000575927 294 ntBASIC4.74□□□□□ -1.65
SDC1P18827 ZNF66-203ENST00000594534 757 ntTSL 5 BASIC4.74□□□□□ -1.65
SDC1P18827 QTRT1P1-201ENST00000604344 1078 ntBASIC4.74□□□□□ -1.65
SDC1P18827 AL512329.2-201ENST00000607350 548 ntBASIC4.74□□□□□ -1.65
SDC1P18827 MILR1-203ENST00000615220 1196 ntAPPRIS P3 TSL 2 BASIC4.74□□□□□ -1.65
SDC1P18827 BNIP3P41-202ENST00000616656 861 ntBASIC4.74□□□□□ -1.65
SDC1P18827 Metazoa_SRP.55-201ENST00000618452 275 ntBASIC4.74□□□□□ -1.65
SDC1P18827 AC008115.4-201ENST00000619780 775 ntBASIC4.74□□□□□ -1.65
SDC1P18827 AC018793.2-201ENST00000639584 585 ntAPPRIS P1 BASIC4.74□□□□□ -1.65
SDC1P18827 AC018793.3-201ENST00000640805 585 ntAPPRIS P1 BASIC4.74□□□□□ -1.65
SDC1P18827 INTU-201ENST00000335251 13233 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
SDC1P18827 VCAM1-202ENST00000347652 2812 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
SDC1P18827 MROH9-202ENST00000367759 3165 ntAPPRIS ALT2 TSL 5 BASIC4.74□□□□□ -1.65
SDC1P18827 CCDC169-204ENST00000379864 5944 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
SDC1P18827 CENPI-204ENST00000423383 2314 ntAPPRIS P3 TSL 5 BASIC4.74□□□□□ -1.65
SDC1P18827 ATP8B4-211ENST00000559829 4894 ntAPPRIS P1 TSL 5 BASIC4.74□□□□□ -1.65
SDC1P18827 USP8-204ENST00000425032 3559 ntTSL 2 BASIC4.74□□□□□ -1.65
SDC1P18827 CYP7A1-201ENST00000301645 2950 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
SDC1P18827 CLUL1-213ENST00000620089 1947 ntTSL 5 BASIC4.74□□□□□ -1.65
SDC1P18827 CDK14-203ENST00000406263 5163 ntAPPRIS ALT2 TSL 1 (best) BASIC4.74□□□□□ -1.65
SDC1P18827 KRR1-201ENST00000229214 10118 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
SDC1P18827 FAM19A1-201ENST00000478136 2014 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
SDC1P18827 RNF217-201ENST00000359704 1784 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
SDC1P18827 NPY5R-202ENST00000506953 1418 ntAPPRIS P1 BASIC4.73□□□□□ -1.65
SDC1P18827 ZBTB38-201ENST00000321464 3588 ntAPPRIS P1 BASIC4.73□□□□□ -1.65
SDC1P18827 MRRF-208ENST00000394315 1501 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
SDC1P18827 RABL3-201ENST00000273375 3883 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
SDC1P18827 TMEM68-202ENST00000434581 2549 ntAPPRIS P1 TSL 5 BASIC4.73□□□□□ -1.65
SDC1P18827 DCTN4-201ENST00000424236 4054 ntTSL 2 BASIC4.73□□□□□ -1.65
SDC1P18827 PCDH9-203ENST00000456367 5072 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
SDC1P18827 SNORA66-201ENST00000384792 133 ntBASIC4.73□□□□□ -1.65
SDC1P18827 DHFRP5-201ENST00000406944 564 ntBASIC4.73□□□□□ -1.65
SDC1P18827 AL449043.1-202ENST00000427318 582 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
SDC1P18827 AL353689.2-201ENST00000433837 440 ntTSL 3 BASIC4.73□□□□□ -1.65
SDC1P18827 RPL34P20-201ENST00000442771 351 ntBASIC4.73□□□□□ -1.65
SDC1P18827 OR7E125P-201ENST00000443450 846 ntBASIC4.73□□□□□ -1.65
SDC1P18827 AC114877.1-201ENST00000446601 582 ntTSL 4 BASIC4.73□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 73.9 ms