Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 TNRC6B-202ENST00000335727 17933 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
TNFP01375 MKKS-202ENST00000399054 2663 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
TNFP01375 LINC02352-202ENST00000559292 1450 ntTSL 5 BASIC4.82□□□□□ -1.64
TNFP01375 EXO1-201ENST00000348581 3192 ntAPPRIS P3 TSL 1 (best) BASIC4.82□□□□□ -1.64
TNFP01375 ASTE1-208ENST00000514044 2504 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
TNFP01375 OR56A4-204ENST00000641835 3613 ntAPPRIS P1 BASIC4.82□□□□□ -1.64
TNFP01375 CLCN5-202ENST00000376088 10108 ntTSL 2 BASIC4.82□□□□□ -1.64
TNFP01375 AC139713.2-209ENST00000509873 1303 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
TNFP01375 EOGT-209ENST00000540955 1332 ntTSL 2 BASIC4.82□□□□□ -1.64
TNFP01375 HIST1H2BD-201ENST00000289316 789 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
TNFP01375 SNORA73.1-201ENST00000363107 205 ntBASIC4.82□□□□□ -1.64
TNFP01375 MIR192-201ENST00000384915 110 ntBASIC4.82□□□□□ -1.64
TNFP01375 KLRC3-202ENST00000396439 1028 ntAPPRIS ALT2 TSL 5 BASIC4.82□□□□□ -1.64
TNFP01375 MIR298-201ENST00000401212 88 ntBASIC4.82□□□□□ -1.64
TNFP01375 U3.32-201ENST00000408116 212 ntBASIC4.82□□□□□ -1.64
TNFP01375 AHSA2-203ENST00000410073 479 ntTSL 5 BASIC4.82□□□□□ -1.64
TNFP01375 AL603962.1-201ENST00000413148 436 ntTSL 5 BASIC4.82□□□□□ -1.64
TNFP01375 AC114755.2-201ENST00000413520 361 ntBASIC4.82□□□□□ -1.64
TNFP01375 RPL26P29-201ENST00000415623 438 ntBASIC4.82□□□□□ -1.64
TNFP01375 AL590139.1-201ENST00000416267 400 ntBASIC4.82□□□□□ -1.64
TNFP01375 HYALP1-201ENST00000417674 1279 ntBASIC4.82□□□□□ -1.64
TNFP01375 AC006369.1-201ENST00000419425 548 ntTSL 3 BASIC4.82□□□□□ -1.64
TNFP01375 AC245028.1-201ENST00000423259 256 ntBASIC4.82□□□□□ -1.64
TNFP01375 HNRNPA1P29-201ENST00000426409 879 ntBASIC4.82□□□□□ -1.64
TNFP01375 BX119904.3-201ENST00000428194 957 ntBASIC4.82□□□□□ -1.64
TNFP01375 NRBF2P3-201ENST00000432731 865 ntBASIC4.82□□□□□ -1.64
TNFP01375 TRIM31-AS1-204ENST00000440874 549 ntTSL 3 BASIC4.82□□□□□ -1.64
TNFP01375 RN7SL738P-201ENST00000470264 297 ntBASIC4.82□□□□□ -1.64
TNFP01375 AC006463.2-201ENST00000473326 348 ntBASIC4.82□□□□□ -1.64
TNFP01375 AC104071.1-201ENST00000505636 602 ntTSL 3 BASIC4.82□□□□□ -1.64
TNFP01375 AC091180.4-201ENST00000511322 245 ntTSL 2 BASIC4.82□□□□□ -1.64
TNFP01375 NPM1P21-201ENST00000513394 762 ntBASIC4.82□□□□□ -1.64
TNFP01375 RN7SKP276-201ENST00000516242 268 ntBASIC4.82□□□□□ -1.64
TNFP01375 IGKV1-32-201ENST00000519290 311 ntBASIC4.82□□□□□ -1.64
TNFP01375 TBCA-207ENST00000520039 157 ntTSL 3 BASIC4.82□□□□□ -1.64
TNFP01375 AP001880.2-201ENST00000538233 448 ntBASIC4.82□□□□□ -1.64
TNFP01375 AC068775.2-201ENST00000539033 998 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
TNFP01375 AC007527.1-202ENST00000543347 382 ntTSL 3 BASIC4.82□□□□□ -1.64
TNFP01375 AL929601.2-201ENST00000549951 381 ntTSL 4 BASIC4.82□□□□□ -1.64
TNFP01375 DNAL1-205ENST00000554339 548 ntTSL 5 BASIC4.82□□□□□ -1.64
TNFP01375 MIR4330-201ENST00000579077 105 ntBASIC4.82□□□□□ -1.64
TNFP01375 AP000919.3-201ENST00000582591 568 ntTSL 3 BASIC4.82□□□□□ -1.64
TNFP01375 AC007497.1-201ENST00000610421 561 ntBASIC4.82□□□□□ -1.64
TNFP01375 NAA60-237ENST00000615865 326 ntTSL 5 BASIC4.82□□□□□ -1.64
TNFP01375 SMARCA2-231ENST00000634931 939 ntTSL 5 BASIC4.82□□□□□ -1.64
TNFP01375 PHACTR2P1-202ENST00000636592 773 ntTSL 5 BASIC4.82□□□□□ -1.64
TNFP01375 AC109446.4-201ENST00000623235 2755 ntBASIC4.82□□□□□ -1.64
TNFP01375 GABRG1-201ENST00000295452 6785 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
TNFP01375 AC063976.2-201ENST00000425667 3556 ntBASIC4.82□□□□□ -1.64
TNFP01375 KCNJ16-204ENST00000585558 4014 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
TNFP01375 CHEK1-216ENST00000534070 3513 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
TNFP01375 AC239809.3-214ENST00000496508 2513 ntTSL 2 BASIC4.82□□□□□ -1.64
TNFP01375 MTUS1-201ENST00000262102 6160 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
TNFP01375 FAM184A-204ENST00000368475 3392 ntTSL 2 BASIC4.82□□□□□ -1.64
TNFP01375 LINC02476-201ENST00000426413 1577 ntTSL 2 BASIC4.82□□□□□ -1.64
TNFP01375 PTK2-213ENST00000519465 3279 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
TNFP01375 DNAAF4-CCPG1-201ENST00000565113 4589 ntTSL 2 BASIC4.82□□□□□ -1.64
TNFP01375 SLC1A3-202ENST00000381918 3652 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
TNFP01375 POU2F1-202ENST00000367862 14038 ntAPPRIS ALT2 TSL 1 (best) BASIC4.82□□□□□ -1.64
TNFP01375 NBPF10-201ENST00000583866 13042 ntAPPRIS P1 TSL 5 BASIC4.82□□□□□ -1.64
TNFP01375 RGS4-202ENST00000367908 2606 ntTSL 2 BASIC4.81□□□□□ -1.64
TNFP01375 AC139426.3-201ENST00000605648 2059 ntBASIC4.81□□□□□ -1.64
TNFP01375 AC125336.1-201ENST00000508893 2827 ntBASIC4.81□□□□□ -1.64
TNFP01375 RNVU1-6-201ENST00000364688 164 ntBASIC4.81□□□□□ -1.64
TNFP01375 C1orf54-201ENST00000369098 418 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
TNFP01375 RPS4XP9-201ENST00000405151 780 ntBASIC4.81□□□□□ -1.64
TNFP01375 RPS16P5-201ENST00000406501 404 ntBASIC4.81□□□□□ -1.64
TNFP01375 TBCAP2-201ENST00000416175 326 ntBASIC4.81□□□□□ -1.64
TNFP01375 LINC02532-206ENST00000433965 570 ntTSL 2 BASIC4.81□□□□□ -1.64
TNFP01375 SCAND3P1-201ENST00000439854 1060 ntBASIC4.81□□□□□ -1.64
TNFP01375 AL138878.2-201ENST00000440581 1241 ntBASIC4.81□□□□□ -1.64
TNFP01375 AC122136.1-201ENST00000443971 478 ntTSL 3 BASIC4.81□□□□□ -1.64
TNFP01375 H2AFZP6-201ENST00000444403 394 ntBASIC4.81□□□□□ -1.64
TNFP01375 AC010733.1-201ENST00000451515 401 ntBASIC4.81□□□□□ -1.64
TNFP01375 AC017101.1-201ENST00000453665 571 ntTSL 4 BASIC4.81□□□□□ -1.64
TNFP01375 LINC01206-203ENST00000476815 482 ntTSL 3 BASIC4.81□□□□□ -1.64
TNFP01375 ENPP7P11-201ENST00000505915 627 ntBASIC4.81□□□□□ -1.64
TNFP01375 AC100784.1-201ENST00000522790 310 ntBASIC4.81□□□□□ -1.64
TNFP01375 AC104257.1-202ENST00000524275 884 ntTSL 3 BASIC4.81□□□□□ -1.64
TNFP01375 ETFRF1-202ENST00000553788 708 ntTSL 3 BASIC4.81□□□□□ -1.64
TNFP01375 AC010435.1-201ENST00000623353 1177 ntBASIC4.81□□□□□ -1.64
TNFP01375 CTAGE5-207ENST00000396165 3071 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
TNFP01375 TRPC4-203ENST00000358477 2955 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
TNFP01375 SMARCA2-206ENST00000382185 1584 ntTSL 2 BASIC4.81□□□□□ -1.64
TNFP01375 BMPR1APS1-201ENST00000403332 1598 ntBASIC4.81□□□□□ -1.64
TNFP01375 BACH1-202ENST00000399921 5769 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
TNFP01375 MAPK10-328ENST00000641553 4009 ntBASIC4.81□□□□□ -1.64
TNFP01375 AP001029.2-203ENST00000589795 4910 ntBASIC4.8□□□□□ -1.64
TNFP01375 GLRA2-202ENST00000355020 1730 ntAPPRIS ALT1 TSL 1 (best) BASIC4.8□□□□□ -1.64
TNFP01375 ITGAV-204ENST00000433736 3288 ntAPPRIS ALT2 TSL 2 BASIC4.8□□□□□ -1.64
TNFP01375 SCN3A-202ENST00000360093 9123 ntAPPRIS ALT1 TSL 5 BASIC4.8□□□□□ -1.64
TNFP01375 CEP162-207ENST00000617909 5095 ntTSL 5 BASIC4.8□□□□□ -1.64
TNFP01375 EBF1-211ENST00000622875 4430 ntTSL 5 BASIC4.8□□□□□ -1.64
TNFP01375 AL359313.1-201ENST00000447311 2293 ntTSL 2 BASIC4.8□□□□□ -1.64
TNFP01375 CLSPN-206ENST00000520551 4010 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
TNFP01375 COL14A1-209ENST00000537875 3119 ntTSL 5 BASIC4.8□□□□□ -1.64
TNFP01375 LINC02355-201ENST00000503100 2520 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
TNFP01375 SYTL2-204ENST00000389958 1943 ntTSL 2 BASIC4.8□□□□□ -1.64
TNFP01375 ZNF652P1-201ENST00000442420 1309 ntBASIC4.8□□□□□ -1.64
TNFP01375 KLHL5-202ENST00000261426 3300 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 93.2 ms