Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 CPSF2-201ENST00000298875 13035 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
SIX2Q9NPC8 WDR5B-201ENST00000330689 3720 ntAPPRIS P1 BASIC5.31□□□□□ -1.56
SIX2Q9NPC8 GYS2-201ENST00000261195 3132 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
SIX2Q9NPC8 CEP112-204ENST00000537949 2847 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
SIX2Q9NPC8 SLC9C1-201ENST00000305815 4172 ntAPPRIS P3 TSL 2 BASIC5.31□□□□□ -1.56
SIX2Q9NPC8 SMAD4-202ENST00000398417 8495 ntAPPRIS P1 TSL 5 BASIC5.31□□□□□ -1.56
SIX2Q9NPC8 ZNF733P-202ENST00000444809 1573 ntBASIC5.31□□□□□ -1.56
SIX2Q9NPC8 U8.4-201ENST00000363626 134 ntBASIC5.31□□□□□ -1.56
SIX2Q9NPC8 ASXL1-203ENST00000375689 812 ntTSL 5 BASIC5.31□□□□□ -1.56
SIX2Q9NPC8 IGLJ6-201ENST00000390328 70 ntAPPRIS P1 BASIC5.31□□□□□ -1.56
SIX2Q9NPC8 SNORA40.4-201ENST00000390971 128 ntBASIC5.31□□□□□ -1.56
SIX2Q9NPC8 KLRC3-202ENST00000396439 1028 ntAPPRIS ALT2 TSL 5 BASIC5.31□□□□□ -1.56
SIX2Q9NPC8 AC073333.1-201ENST00000418907 648 ntTSL 3 BASIC5.31□□□□□ -1.56
SIX2Q9NPC8 AL513128.1-201ENST00000422675 469 ntTSL 5 BASIC5.31□□□□□ -1.56
SIX2Q9NPC8 CKS1BP6-201ENST00000424932 240 ntBASIC5.31□□□□□ -1.56
SIX2Q9NPC8 PCBP1-AS1-224ENST00000429599 1045 ntTSL 5 BASIC5.31□□□□□ -1.56
SIX2Q9NPC8 ZDHHC20P1-204ENST00000435787 423 ntBASIC5.31□□□□□ -1.56
SIX2Q9NPC8 AC004994.1-201ENST00000447057 313 ntTSL 3 BASIC5.31□□□□□ -1.56
SIX2Q9NPC8 GYG1P1-201ENST00000460864 698 ntBASIC5.31□□□□□ -1.56
SIX2Q9NPC8 ALG13-211ENST00000473389 693 ntTSL 2 BASIC5.31□□□□□ -1.56
SIX2Q9NPC8 LINC01192-206ENST00000489012 818 ntTSL 5 BASIC5.31□□□□□ -1.56
SIX2Q9NPC8 AC119150.1-201ENST00000507143 563 ntTSL 2 BASIC5.31□□□□□ -1.56
SIX2Q9NPC8 RPL37-204ENST00000508493 553 ntAPPRIS ALT1 TSL 1 (best) BASIC5.31□□□□□ -1.56
SIX2Q9NPC8 AC098869.2-201ENST00000514187 862 ntTSL 3 BASIC5.31□□□□□ -1.56
SIX2Q9NPC8 RNU6-467P-201ENST00000517027 110 ntBASIC5.31□□□□□ -1.56
SIX2Q9NPC8 E2F5-204ENST00000517476 1094 ntTSL 2 BASIC5.31□□□□□ -1.56
SIX2Q9NPC8 AC100802.1-201ENST00000519197 1026 ntTSL 3 BASIC5.31□□□□□ -1.56
SIX2Q9NPC8 MS4A6A-210ENST00000529054 1160 ntTSL 5 BASIC5.31□□□□□ -1.56
SIX2Q9NPC8 AC068775.2-201ENST00000539033 998 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
SIX2Q9NPC8 RERG-AS1-201ENST00000541243 337 ntTSL 2 BASIC5.31□□□□□ -1.56
SIX2Q9NPC8 AC007298.1-201ENST00000547346 656 ntTSL 3 BASIC5.31□□□□□ -1.56
SIX2Q9NPC8 AC004825.1-201ENST00000555068 586 ntBASIC5.31□□□□□ -1.56
SIX2Q9NPC8 AC105339.2-201ENST00000558342 1091 ntTSL 3 BASIC5.31□□□□□ -1.56
SIX2Q9NPC8 AC009852.2-201ENST00000567898 485 ntBASIC5.31□□□□□ -1.56
SIX2Q9NPC8 SETP3-201ENST00000581726 813 ntBASIC5.31□□□□□ -1.56
SIX2Q9NPC8 AC105094.2-202ENST00000590968 566 ntTSL 2 BASIC5.31□□□□□ -1.56
SIX2Q9NPC8 AC006116.3-201ENST00000592968 361 ntBASIC5.31□□□□□ -1.56
SIX2Q9NPC8 AC011453.2-201ENST00000603737 729 ntBASIC5.31□□□□□ -1.56
SIX2Q9NPC8 AC005972.3-201ENST00000606304 481 ntBASIC5.31□□□□□ -1.56
SIX2Q9NPC8 AC092953.2-201ENST00000608000 699 ntBASIC5.31□□□□□ -1.56
SIX2Q9NPC8 AL008635.1-201ENST00000609073 385 ntTSL 3 BASIC5.31□□□□□ -1.56
SIX2Q9NPC8 EFCAB3-201ENST00000305286 1542 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
SIX2Q9NPC8 AL590763.1-201ENST00000398297 1545 ntBASIC5.31□□□□□ -1.56
SIX2Q9NPC8 TXNDC8-201ENST00000374507 1787 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
SIX2Q9NPC8 OR4G1P-202ENST00000641173 1788 ntBASIC5.31□□□□□ -1.56
SIX2Q9NPC8 DSE-204ENST00000452085 10586 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
SIX2Q9NPC8 MYO16-201ENST00000251041 3492 ntTSL 5 BASIC5.31□□□□□ -1.56
SIX2Q9NPC8 SH3BGRL-201ENST00000373212 1923 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
SIX2Q9NPC8 MUM1L1-202ENST00000357175 4173 ntAPPRIS P1 TSL 2 BASIC5.3□□□□□ -1.56
SIX2Q9NPC8 IL13RA2-201ENST00000243213 1371 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
SIX2Q9NPC8 PCDH15-217ENST00000414778 9234 ntAPPRIS ALT2 TSL 5 BASIC5.3□□□□□ -1.56
SIX2Q9NPC8 PCDH15-227ENST00000614895 9249 ntAPPRIS ALT2 TSL 5 BASIC5.3□□□□□ -1.56
SIX2Q9NPC8 CASC17-201ENST00000569074 2059 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
SIX2Q9NPC8 VPS13C-204ENST00000395898 11012 ntAPPRIS ALT2 TSL 1 (best) BASIC5.3□□□□□ -1.56
SIX2Q9NPC8 LINC01902-203ENST00000637369 7356 ntTSL 5 BASIC5.3□□□□□ -1.56
SIX2Q9NPC8 PUS10-201ENST00000316752 2278 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
SIX2Q9NPC8 AHNAK-202ENST00000378024 18787 ntAPPRIS P3 TSL 2 BASIC5.3□□□□□ -1.56
SIX2Q9NPC8 DOCK10-202ENST00000409592 7288 ntAPPRIS ALT2 TSL 1 (best) BASIC5.3□□□□□ -1.56
SIX2Q9NPC8 RRN3-202ENST00000327307 2039 ntTSL 2 BASIC5.3□□□□□ -1.56
SIX2Q9NPC8 PCDH15-212ENST00000395442 2970 ntTSL 5 BASIC5.3□□□□□ -1.56
SIX2Q9NPC8 RNA5SP345-201ENST00000410646 108 ntBASIC5.3□□□□□ -1.56
SIX2Q9NPC8 AP000534.2-201ENST00000412729 568 ntBASIC5.3□□□□□ -1.56
SIX2Q9NPC8 LINC01829-201ENST00000414404 571 ntTSL 2 BASIC5.3□□□□□ -1.56
SIX2Q9NPC8 TBCAP2-201ENST00000416175 326 ntBASIC5.3□□□□□ -1.56
SIX2Q9NPC8 RGS17P1-201ENST00000423358 553 ntBASIC5.3□□□□□ -1.56
SIX2Q9NPC8 AC003659.1-201ENST00000424251 465 ntTSL 5 BASIC5.3□□□□□ -1.56
SIX2Q9NPC8 SETP10-201ENST00000424368 814 ntBASIC5.3□□□□□ -1.56
SIX2Q9NPC8 LINC01798-203ENST00000428590 553 ntTSL 4 BASIC5.3□□□□□ -1.56
SIX2Q9NPC8 AL158835.2-201ENST00000430970 300 ntTSL 2 BASIC5.3□□□□□ -1.56
SIX2Q9NPC8 AC013410.1-201ENST00000436223 1232 ntBASIC5.3□□□□□ -1.56
SIX2Q9NPC8 AL592494.1-201ENST00000437523 309 ntTSL 5 BASIC5.3□□□□□ -1.56
SIX2Q9NPC8 AC018467.1-203ENST00000440785 506 ntTSL 3 BASIC5.3□□□□□ -1.56
SIX2Q9NPC8 PCBP1-AS1-237ENST00000452431 1194 ntTSL 4 BASIC5.3□□□□□ -1.56
SIX2Q9NPC8 AC096543.1-201ENST00000455038 823 ntTSL 3 BASIC5.3□□□□□ -1.56
SIX2Q9NPC8 NFU1-207ENST00000462320 558 ntTSL 4 BASIC5.3□□□□□ -1.56
SIX2Q9NPC8 AC025181.1-201ENST00000477507 416 ntBASIC5.3□□□□□ -1.56
SIX2Q9NPC8 RN7SL97P-201ENST00000486780 299 ntBASIC5.3□□□□□ -1.56
SIX2Q9NPC8 AC069304.1-201ENST00000491593 704 ntBASIC5.3□□□□□ -1.56
SIX2Q9NPC8 LINC02265-201ENST00000510551 957 ntTSL 2 BASIC5.3□□□□□ -1.56
SIX2Q9NPC8 FOXD1-AS1-201ENST00000514661 424 ntTSL 3 BASIC5.3□□□□□ -1.56
SIX2Q9NPC8 RNA5SP249-201ENST00000516127 99 ntBASIC5.3□□□□□ -1.56
SIX2Q9NPC8 AC090022.1-201ENST00000546569 311 ntBASIC5.3□□□□□ -1.56
SIX2Q9NPC8 TEX49-202ENST00000548380 573 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
SIX2Q9NPC8 AC012464.2-201ENST00000551257 779 ntTSL 5 BASIC5.3□□□□□ -1.56
SIX2Q9NPC8 AC009139.2-201ENST00000569032 566 ntTSL 5 BASIC5.3□□□□□ -1.56
SIX2Q9NPC8 MIR3691-201ENST00000578066 90 ntBASIC5.3□□□□□ -1.56
SIX2Q9NPC8 AP005121.1-202ENST00000584414 555 ntTSL 2 BASIC5.3□□□□□ -1.56
SIX2Q9NPC8 ZNF66-203ENST00000594534 757 ntTSL 5 BASIC5.3□□□□□ -1.56
SIX2Q9NPC8 AC010320.2-203ENST00000601745 574 ntTSL 4 BASIC5.3□□□□□ -1.56
SIX2Q9NPC8 AC022387.2-201ENST00000604050 448 ntBASIC5.3□□□□□ -1.56
SIX2Q9NPC8 AC117490.2-201ENST00000610042 594 ntBASIC5.3□□□□□ -1.56
SIX2Q9NPC8 AC093799.2-201ENST00000610062 578 ntBASIC5.3□□□□□ -1.56
SIX2Q9NPC8 CGA-206ENST00000630630 832 ntTSL 2 BASIC5.3□□□□□ -1.56
SIX2Q9NPC8 TM4SF1-202ENST00000472441 3115 ntTSL 2 BASIC5.3□□□□□ -1.56
SIX2Q9NPC8 ZNF107-201ENST00000344930 5174 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
SIX2Q9NPC8 SLC9B1-202ENST00000394789 1735 ntAPPRIS ALT2 TSL 1 (best) BASIC5.3□□□□□ -1.56
SIX2Q9NPC8 LMNTD1-207ENST00000539744 1729 ntAPPRIS ALT2 TSL 1 (best) BASIC5.3□□□□□ -1.56
SIX2Q9NPC8 NDUFA5-207ENST00000471770 5608 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
SIX2Q9NPC8 HEATR5A-203ENST00000543095 7840 ntAPPRIS P1 TSL 5 BASIC5.3□□□□□ -1.56
SIX2Q9NPC8 ALMS1-IT1-201ENST00000441587 2107 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 106.5 ms