Protein–RNA interactions for Protein: Q9H4W6

EBF3, Transcription factor COE3, humanhuman

Predictions only

Length 596 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EBF3Q9H4W6 NPM1-203ENST00000393820 1598 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
EBF3Q9H4W6 VNN2-206ENST00000525270 1608 ntAPPRIS ALT2 TSL 2 BASIC5.62□□□□□ -1.51
EBF3Q9H4W6 LINC02203-203ENST00000625989 1600 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
EBF3Q9H4W6 MYBPC1-216ENST00000550270 3426 ntAPPRIS ALT2 TSL 5 BASIC5.62□□□□□ -1.51
EBF3Q9H4W6 BMPR2-204ENST00000638587 3443 ntTSL 5 BASIC5.62□□□□□ -1.51
EBF3Q9H4W6 AL359538.1-201ENST00000453498 1710 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
EBF3Q9H4W6 SLC26A7-210ENST00000617233 5257 ntAPPRIS P1 TSL 5 BASIC5.62□□□□□ -1.51
EBF3Q9H4W6 USP7-202ENST00000381886 3587 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
EBF3Q9H4W6 ADGRF5-201ENST00000265417 5668 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
EBF3Q9H4W6 ERP27-201ENST00000266397 2096 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
EBF3Q9H4W6 KSR2-202ENST00000425217 17008 ntTSL 5 BASIC5.62□□□□□ -1.51
EBF3Q9H4W6 TRPM3-209ENST00000377110 12258 ntAPPRIS ALT1 TSL 1 (best) BASIC5.62□□□□□ -1.51
EBF3Q9H4W6 ZNF260-204ENST00000592282 5055 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
EBF3Q9H4W6 SEC24D-211ENST00000511481 2626 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
EBF3Q9H4W6 ZNF493-203ENST00000392288 5023 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
EBF3Q9H4W6 NUP37-201ENST00000251074 1203 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
EBF3Q9H4W6 USP15-201ENST00000280377 4748 ntAPPRIS ALT1 TSL 1 (best) BASIC5.61□□□□□ -1.51
EBF3Q9H4W6 AFF2-201ENST00000286437 12280 ntTSL 2 BASIC5.61□□□□□ -1.51
EBF3Q9H4W6 Y_RNA.62-201ENST00000362840 99 ntBASIC5.61□□□□□ -1.51
EBF3Q9H4W6 MIR550A3-201ENST00000390735 95 ntBASIC5.61□□□□□ -1.51
EBF3Q9H4W6 RPL11P3-201ENST00000395256 523 ntBASIC5.61□□□□□ -1.51
EBF3Q9H4W6 RPL7-204ENST00000396467 1526 ntTSL 3 BASIC5.61□□□□□ -1.51
EBF3Q9H4W6 AL645733.1-201ENST00000402250 217 ntBASIC5.61□□□□□ -1.51
EBF3Q9H4W6 AL589647.1-201ENST00000402485 466 ntBASIC5.61□□□□□ -1.51
EBF3Q9H4W6 OR4K12P-201ENST00000406538 961 ntBASIC5.61□□□□□ -1.51
EBF3Q9H4W6 DYNC1I2-207ENST00000410079 2159 ntTSL 2 BASIC5.61□□□□□ -1.51
EBF3Q9H4W6 RNF10P1-201ENST00000418589 369 ntBASIC5.61□□□□□ -1.51
EBF3Q9H4W6 MTERF1-203ENST00000419292 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC5.61□□□□□ -1.51
EBF3Q9H4W6 EEF1A1P14-201ENST00000421195 1376 ntBASIC5.61□□□□□ -1.51
EBF3Q9H4W6 ZNF559-ZNF177-201ENST00000434737 2340 ntAPPRIS ALT2 TSL 2 BASIC5.61□□□□□ -1.51
EBF3Q9H4W6 PSMD10P3-201ENST00000437000 448 ntBASIC5.61□□□□□ -1.51
EBF3Q9H4W6 AL691517.1-201ENST00000440833 1235 ntBASIC5.61□□□□□ -1.51
EBF3Q9H4W6 RPL7P61-201ENST00000451721 751 ntBASIC5.61□□□□□ -1.51
EBF3Q9H4W6 RBM5-214ENST00000469838 2716 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
EBF3Q9H4W6 TTC26-205ENST00000474035 1193 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
EBF3Q9H4W6 SNRPCP2-201ENST00000504370 475 ntBASIC5.61□□□□□ -1.51
EBF3Q9H4W6 HMGB1P44-201ENST00000508597 572 ntBASIC5.61□□□□□ -1.51
EBF3Q9H4W6 UGT2A1-205ENST00000512704 2519 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
EBF3Q9H4W6 LNX1-AS1-204ENST00000514364 495 ntTSL 3 BASIC5.61□□□□□ -1.51
EBF3Q9H4W6 ASB8-202ENST00000535055 657 ntTSL 2 BASIC5.61□□□□□ -1.51
EBF3Q9H4W6 EPS8-207ENST00000540613 2204 ntTSL 2 BASIC5.61□□□□□ -1.51
EBF3Q9H4W6 AC092078.1-201ENST00000558370 325 ntTSL 3 BASIC5.61□□□□□ -1.51
EBF3Q9H4W6 RPS15A-203ENST00000563390 525 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
EBF3Q9H4W6 MIR4433B-201ENST00000581329 102 ntBASIC5.61□□□□□ -1.51
EBF3Q9H4W6 AC005776.1-201ENST00000603164 290 ntBASIC5.61□□□□□ -1.51
EBF3Q9H4W6 ABI1P1-201ENST00000603375 1120 ntBASIC5.61□□□□□ -1.51
EBF3Q9H4W6 AC104964.3-201ENST00000606115 2860 ntBASIC5.61□□□□□ -1.51
EBF3Q9H4W6 AC009163.6-201ENST00000612367 342 ntBASIC5.61□□□□□ -1.51
EBF3Q9H4W6 PSMA8-205ENST00000612461 1619 ntTSL 5 BASIC5.61□□□□□ -1.51
EBF3Q9H4W6 Metazoa_SRP.111-201ENST00000614073 259 ntBASIC5.61□□□□□ -1.51
EBF3Q9H4W6 INSIG2-208ENST00000614681 1347 ntTSL 5 BASIC5.61□□□□□ -1.51
EBF3Q9H4W6 AC026367.3-201ENST00000619032 590 ntBASIC5.61□□□□□ -1.51
EBF3Q9H4W6 AC006453.5-201ENST00000636451 619 ntBASIC5.61□□□□□ -1.51
EBF3Q9H4W6 SRGAP1-201ENST00000355086 23331 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
EBF3Q9H4W6 PCGF5-205ENST00000614189 7037 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
EBF3Q9H4W6 ARHGAP24-201ENST00000264343 4572 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
EBF3Q9H4W6 MAPRE2-202ENST00000413393 4173 ntAPPRIS ALT1 TSL 5 BASIC5.61□□□□□ -1.51
EBF3Q9H4W6 AL353796.1-201ENST00000561542 3241 ntBASIC5.61□□□□□ -1.51
EBF3Q9H4W6 FIGN-201ENST00000333129 9536 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
EBF3Q9H4W6 MAP3K7-203ENST00000369327 4558 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
EBF3Q9H4W6 DNA2-201ENST00000358410 4208 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
EBF3Q9H4W6 OAZ3-204ENST00000479764 3789 ntTSL 5 BASIC5.6□□□□□ -1.51
EBF3Q9H4W6 DST-220ENST00000518935 3547 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
EBF3Q9H4W6 CBX5-201ENST00000209875 11528 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
EBF3Q9H4W6 MOXD1-201ENST00000336749 2950 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
EBF3Q9H4W6 AC131971.1-201ENST00000332881 1482 ntBASIC5.6□□□□□ -1.51
EBF3Q9H4W6 AL355578.1-201ENST00000607405 1328 ntBASIC5.6□□□□□ -1.51
EBF3Q9H4W6 AL121886.1-201ENST00000358609 435 ntBASIC5.6□□□□□ -1.51
EBF3Q9H4W6 SPRR2D-201ENST00000360379 682 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
EBF3Q9H4W6 MRRF-207ENST00000373729 870 ntTSL 3 BASIC5.6□□□□□ -1.51
EBF3Q9H4W6 AL078595.1-201ENST00000404458 226 ntBASIC5.6□□□□□ -1.51
EBF3Q9H4W6 RN7SKP279-201ENST00000411383 298 ntBASIC5.6□□□□□ -1.51
EBF3Q9H4W6 PCNPP4-201ENST00000414817 517 ntBASIC5.6□□□□□ -1.51
EBF3Q9H4W6 HYALP1-201ENST00000417674 1279 ntBASIC5.6□□□□□ -1.51
EBF3Q9H4W6 ZNF885P-201ENST00000420174 1098 ntBASIC5.6□□□□□ -1.51
EBF3Q9H4W6 AL049637.1-201ENST00000424664 503 ntTSL 5 BASIC5.6□□□□□ -1.51
EBF3Q9H4W6 AC006041.1-201ENST00000425322 328 ntTSL 3 BASIC5.6□□□□□ -1.51
EBF3Q9H4W6 HNRNPA3P4-201ENST00000427514 803 ntBASIC5.6□□□□□ -1.51
EBF3Q9H4W6 LINC00969-211ENST00000438608 525 ntTSL 5 BASIC5.6□□□□□ -1.51
EBF3Q9H4W6 SUMO2P1-206ENST00000445436 284 ntBASIC5.6□□□□□ -1.51
EBF3Q9H4W6 AC012355.1-201ENST00000450290 769 ntTSL 3 BASIC5.6□□□□□ -1.51
EBF3Q9H4W6 AL353148.1-203ENST00000452286 665 ntTSL 3 BASIC5.6□□□□□ -1.51
EBF3Q9H4W6 RPL35AP28-201ENST00000459730 331 ntBASIC5.6□□□□□ -1.51
EBF3Q9H4W6 BX284632.1-201ENST00000478218 541 ntBASIC5.6□□□□□ -1.51
EBF3Q9H4W6 AC015864.1-201ENST00000496512 544 ntBASIC5.6□□□□□ -1.51
EBF3Q9H4W6 AC093607.1-202ENST00000499715 559 ntTSL 4 BASIC5.6□□□□□ -1.51
EBF3Q9H4W6 LINC02499-201ENST00000502291 763 ntTSL 3 BASIC5.6□□□□□ -1.51
EBF3Q9H4W6 BOLA3P3-201ENST00000505182 232 ntBASIC5.6□□□□□ -1.51
EBF3Q9H4W6 AC016550.1-201ENST00000505348 785 ntBASIC5.6□□□□□ -1.51
EBF3Q9H4W6 RNU6-760P-201ENST00000516078 97 ntBASIC5.6□□□□□ -1.51
EBF3Q9H4W6 AC012613.1-201ENST00000522685 387 ntTSL 2 BASIC5.6□□□□□ -1.51
EBF3Q9H4W6 CA1-224ENST00000542576 1236 ntAPPRIS P1 TSL 5 BASIC5.6□□□□□ -1.51
EBF3Q9H4W6 AC087888.1-201ENST00000550884 1254 ntBASIC5.6□□□□□ -1.51
EBF3Q9H4W6 AC106028.2-201ENST00000555325 464 ntTSL 4 BASIC5.6□□□□□ -1.51
EBF3Q9H4W6 AC127381.1-201ENST00000555979 939 ntBASIC5.6□□□□□ -1.51
EBF3Q9H4W6 AL136298.1-201ENST00000557371 566 ntTSL 3 BASIC5.6□□□□□ -1.51
EBF3Q9H4W6 AC025917.1-201ENST00000562062 612 ntTSL 3 BASIC5.6□□□□□ -1.51
EBF3Q9H4W6 AC006116.3-201ENST00000592968 361 ntBASIC5.6□□□□□ -1.51
EBF3Q9H4W6 AC010320.2-203ENST00000601745 574 ntTSL 4 BASIC5.6□□□□□ -1.51
EBF3Q9H4W6 TAS2R6P-201ENST00000605022 826 ntBASIC5.6□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 89.1 ms