Protein–RNA interactions for Protein: Q9BXY4

RSPO3, R-spondin-3, humanhuman

Predicted RBP Predictions only

Length 272 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RSPO3Q9BXY4 AC005033.1-201ENST00000428904 813 ntBASIC4.56□□□□□ -1.68
RSPO3Q9BXY4 CNOT7P2-201ENST00000441051 832 ntBASIC4.56□□□□□ -1.68
RSPO3Q9BXY4 LINC01704-202ENST00000442358 649 ntTSL 3 BASIC4.56□□□□□ -1.68
RSPO3Q9BXY4 AL139121.1-201ENST00000445647 244 ntTSL 2 BASIC4.56□□□□□ -1.68
RSPO3Q9BXY4 LINC00189-203ENST00000447125 783 ntTSL 3 BASIC4.56□□□□□ -1.68
RSPO3Q9BXY4 AL606490.1-201ENST00000452266 765 ntBASIC4.56□□□□□ -1.68
RSPO3Q9BXY4 RPL5P22-201ENST00000480199 884 ntBASIC4.56□□□□□ -1.68
RSPO3Q9BXY4 MORC1-AS1-201ENST00000480826 564 ntTSL 2 BASIC4.56□□□□□ -1.68
RSPO3Q9BXY4 AC023424.1-201ENST00000496058 459 ntBASIC4.56□□□□□ -1.68
RSPO3Q9BXY4 AC138409.2-202ENST00000507274 458 ntBASIC4.56□□□□□ -1.68
RSPO3Q9BXY4 AC115622.1-201ENST00000509628 587 ntTSL 3 BASIC4.56□□□□□ -1.68
RSPO3Q9BXY4 CDH12P4-201ENST00000517835 295 ntBASIC4.56□□□□□ -1.68
RSPO3Q9BXY4 CDH12P3-201ENST00000517935 295 ntBASIC4.56□□□□□ -1.68
RSPO3Q9BXY4 CDH12P1-201ENST00000518435 295 ntBASIC4.56□□□□□ -1.68
RSPO3Q9BXY4 HMMR-AS1-202ENST00000521666 800 ntTSL 2 BASIC4.56□□□□□ -1.68
RSPO3Q9BXY4 AC091564.3-201ENST00000527398 429 ntTSL 3 BASIC4.56□□□□□ -1.68
RSPO3Q9BXY4 SNHG1-218ENST00000541615 748 ntTSL 5 BASIC4.56□□□□□ -1.68
RSPO3Q9BXY4 AC010197.1-201ENST00000541860 578 ntTSL 4 BASIC4.56□□□□□ -1.68
RSPO3Q9BXY4 PRR4-212ENST00000544994 326 ntAPPRIS ALT2 TSL 1 (best) BASIC4.56□□□□□ -1.68
RSPO3Q9BXY4 APPL2-203ENST00000546731 684 ntTSL 2 BASIC4.56□□□□□ -1.68
RSPO3Q9BXY4 TWF1-207ENST00000548315 1170 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
RSPO3Q9BXY4 NOP10-202ENST00000557912 436 ntTSL 2 BASIC4.56□□□□□ -1.68
RSPO3Q9BXY4 MIR4691-201ENST00000583764 85 ntBASIC4.56□□□□□ -1.68
RSPO3Q9BXY4 MIR3936-201ENST00000584304 110 ntBASIC4.56□□□□□ -1.68
RSPO3Q9BXY4 AC005324.5-201ENST00000584540 571 ntTSL 5 BASIC4.56□□□□□ -1.68
RSPO3Q9BXY4 AC011507.1-201ENST00000585364 567 ntTSL 4 BASIC4.56□□□□□ -1.68
RSPO3Q9BXY4 IGKV2OR2-2-201ENST00000605025 300 ntBASIC4.56□□□□□ -1.68
RSPO3Q9BXY4 AL512329.2-201ENST00000607350 548 ntBASIC4.56□□□□□ -1.68
RSPO3Q9BXY4 DARS-AS1-220ENST00000607985 660 ntTSL 5 BASIC4.56□□□□□ -1.68
RSPO3Q9BXY4 AC034238.1-215ENST00000609792 219 ntTSL 5 BASIC4.56□□□□□ -1.68
RSPO3Q9BXY4 CU634019.2-201ENST00000625184 593 ntTSL 3 BASIC4.56□□□□□ -1.68
RSPO3Q9BXY4 AL672167.1-203ENST00000641299 2975 ntBASIC4.56□□□□□ -1.68
RSPO3Q9BXY4 LINC01739-205ENST00000641890 573 ntBASIC4.56□□□□□ -1.68
RSPO3Q9BXY4 KCTD16-201ENST00000507359 13950 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
RSPO3Q9BXY4 DEPDC1-202ENST00000456315 5331 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
RSPO3Q9BXY4 C6-202ENST00000337836 3551 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
RSPO3Q9BXY4 FAM197Y3-202ENST00000427622 2325 ntTSL 5 BASIC4.56□□□□□ -1.68
RSPO3Q9BXY4 FAM197Y7-202ENST00000433321 2325 ntTSL 2 BASIC4.56□□□□□ -1.68
RSPO3Q9BXY4 MYB-239ENST00000534121 2238 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
RSPO3Q9BXY4 SMAD4-202ENST00000398417 8495 ntAPPRIS P1 TSL 5 BASIC4.56□□□□□ -1.68
RSPO3Q9BXY4 BAZ2B-203ENST00000392782 8058 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
RSPO3Q9BXY4 ASTE1-208ENST00000514044 2504 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
RSPO3Q9BXY4 GHR-209ENST00000612626 4524 ntAPPRIS P1 TSL 5 BASIC4.55□□□□□ -1.68
RSPO3Q9BXY4 AC006994.2-202ENST00000639259 3828 ntTSL 5 BASIC4.55□□□□□ -1.68
RSPO3Q9BXY4 FOXP2-217ENST00000462331 1388 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
RSPO3Q9BXY4 AC234781.1-202ENST00000412436 1329 ntTSL 5 BASIC4.55□□□□□ -1.68
RSPO3Q9BXY4 SNORA73.1-201ENST00000363107 205 ntBASIC4.55□□□□□ -1.68
RSPO3Q9BXY4 OR51B6-201ENST00000380219 939 ntAPPRIS P1 BASIC4.55□□□□□ -1.68
RSPO3Q9BXY4 RNU1-106P-201ENST00000384382 164 ntBASIC4.55□□□□□ -1.68
RSPO3Q9BXY4 RNA5SP345-201ENST00000410646 108 ntBASIC4.55□□□□□ -1.68
RSPO3Q9BXY4 RN7SKP273-201ENST00000411392 314 ntBASIC4.55□□□□□ -1.68
RSPO3Q9BXY4 NPM1P22-201ENST00000427761 952 ntBASIC4.55□□□□□ -1.68
RSPO3Q9BXY4 RPL34P6-201ENST00000432390 345 ntBASIC4.55□□□□□ -1.68
RSPO3Q9BXY4 AL354714.3-201ENST00000447284 493 ntBASIC4.55□□□□□ -1.68
RSPO3Q9BXY4 FAR2P1-206ENST00000449736 709 ntBASIC4.55□□□□□ -1.68
RSPO3Q9BXY4 CLEC2A-202ENST00000455827 916 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
RSPO3Q9BXY4 AC093166.2-201ENST00000455969 1017 ntBASIC4.55□□□□□ -1.68
RSPO3Q9BXY4 RN7SL517P-201ENST00000462240 305 ntBASIC4.55□□□□□ -1.68
RSPO3Q9BXY4 APOPT1-204ENST00000473127 739 ntTSL 3 BASIC4.55□□□□□ -1.68
RSPO3Q9BXY4 ALG13-211ENST00000473389 693 ntTSL 2 BASIC4.55□□□□□ -1.68
RSPO3Q9BXY4 HMGN2P25-201ENST00000486956 268 ntBASIC4.55□□□□□ -1.68
RSPO3Q9BXY4 ENSA-211ENST00000503345 793 ntTSL 3 BASIC4.55□□□□□ -1.68
RSPO3Q9BXY4 SNRPCP2-201ENST00000504370 475 ntBASIC4.55□□□□□ -1.68
RSPO3Q9BXY4 AC005823.2-201ENST00000505978 650 ntTSL 3 BASIC4.55□□□□□ -1.68
RSPO3Q9BXY4 AC139718.2-201ENST00000506068 481 ntTSL 3 BASIC4.55□□□□□ -1.68
RSPO3Q9BXY4 OR5M14P-201ENST00000506803 618 ntBASIC4.55□□□□□ -1.68
RSPO3Q9BXY4 AC097515.1-202ENST00000511818 371 ntTSL 3 BASIC4.55□□□□□ -1.68
RSPO3Q9BXY4 AC093305.1-201ENST00000514105 522 ntTSL 5 BASIC4.55□□□□□ -1.68
RSPO3Q9BXY4 AC098869.2-201ENST00000514187 862 ntTSL 3 BASIC4.55□□□□□ -1.68
RSPO3Q9BXY4 RNA5SP249-201ENST00000516127 99 ntBASIC4.55□□□□□ -1.68
RSPO3Q9BXY4 LINC00535-203ENST00000520096 790 ntTSL 3 BASIC4.55□□□□□ -1.68
RSPO3Q9BXY4 SDHAF2-208ENST00000543265 438 ntTSL 5 BASIC4.55□□□□□ -1.68
RSPO3Q9BXY4 AC104938.1-202ENST00000563041 630 ntTSL 3 BASIC4.55□□□□□ -1.68
RSPO3Q9BXY4 AC009139.2-201ENST00000569032 566 ntTSL 5 BASIC4.55□□□□□ -1.68
RSPO3Q9BXY4 AC113418.1-201ENST00000569928 517 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
RSPO3Q9BXY4 AC092683.1-203ENST00000594050 654 ntTSL 5 BASIC4.55□□□□□ -1.68
RSPO3Q9BXY4 Z98949.1-211ENST00000596813 773 ntTSL 5 BASIC4.55□□□□□ -1.68
RSPO3Q9BXY4 AC005377.1-201ENST00000605126 456 ntBASIC4.55□□□□□ -1.68
RSPO3Q9BXY4 LAMTOR5-AS1-217ENST00000608152 407 ntTSL 5 BASIC4.55□□□□□ -1.68
RSPO3Q9BXY4 LAMTOR5-AS1-227ENST00000609653 457 ntTSL 2 BASIC4.55□□□□□ -1.68
RSPO3Q9BXY4 AC116651.1-201ENST00000609724 556 ntBASIC4.55□□□□□ -1.68
RSPO3Q9BXY4 ZNF75A-210ENST00000617839 1225 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
RSPO3Q9BXY4 RUVBL2-214ENST00000640699 153 ntTSL 5 BASIC4.55□□□□□ -1.68
RSPO3Q9BXY4 STAMBPL1-202ENST00000371924 2208 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
RSPO3Q9BXY4 PUS7L-203ENST00000431332 1873 ntTSL 2 BASIC4.55□□□□□ -1.68
RSPO3Q9BXY4 SRPK2-201ENST00000357311 3700 ntAPPRIS P3 TSL 1 (best) BASIC4.55□□□□□ -1.68
RSPO3Q9BXY4 AL672167.1-205ENST00000641112 3080 ntBASIC4.55□□□□□ -1.68
RSPO3Q9BXY4 DSE-204ENST00000452085 10586 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
RSPO3Q9BXY4 NXF4-202ENST00000416098 1465 ntBASIC4.55□□□□□ -1.68
RSPO3Q9BXY4 FANCD2-202ENST00000383807 5102 ntAPPRIS ALT2 TSL 1 (best) BASIC4.55□□□□□ -1.68
RSPO3Q9BXY4 IGSF10-201ENST00000282466 11067 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
RSPO3Q9BXY4 OBSCN-214ENST00000636875 23907 ntTSL 5 BASIC4.54□□□□□ -1.68
RSPO3Q9BXY4 STXBP4-203ENST00000405898 2229 ntTSL 5 BASIC4.54□□□□□ -1.68
RSPO3Q9BXY4 BMPR2-201ENST00000374574 9683 ntTSL 2 BASIC4.54□□□□□ -1.68
RSPO3Q9BXY4 PTPRO-203ENST00000442921 3030 ntAPPRIS ALT2 TSL 1 (best) BASIC4.54□□□□□ -1.68
RSPO3Q9BXY4 IL7R-201ENST00000303115 4626 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
RSPO3Q9BXY4 ZBTB44-210ENST00000530205 2179 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
RSPO3Q9BXY4 C1orf140-202ENST00000439004 4340 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
RSPO3Q9BXY4 LRIT3-201ENST00000327908 3781 ntTSL 2 BASIC4.54□□□□□ -1.68
RSPO3Q9BXY4 U2SURP-208ENST00000473835 7276 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 130.8 ms