Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 RALGAPB-202ENST00000397040 8435 ntAPPRIS P3 TSL 1 (best) BASIC5.14□□□□□ -1.59
VPS35Q96QK1 OR10A3-202ENST00000642047 2650 ntAPPRIS P1 BASIC5.14□□□□□ -1.59
VPS35Q96QK1 CEP162-207ENST00000617909 5095 ntTSL 5 BASIC5.14□□□□□ -1.59
VPS35Q96QK1 PROM1-220ENST00000540805 3908 ntAPPRIS ALT2 TSL 5 BASIC5.14□□□□□ -1.59
VPS35Q96QK1 CNKSR2-202ENST00000379510 5315 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
VPS35Q96QK1 SMG1P4-204ENST00000523028 4131 ntBASIC5.14□□□□□ -1.59
VPS35Q96QK1 RNU6-697P-201ENST00000363348 107 ntBASIC5.14□□□□□ -1.59
VPS35Q96QK1 LINC00474-201ENST00000374014 769 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
VPS35Q96QK1 AL592078.1-201ENST00000421866 321 ntTSL 3 BASIC5.14□□□□□ -1.59
VPS35Q96QK1 AL627308.1-201ENST00000435693 821 ntBASIC5.14□□□□□ -1.59
VPS35Q96QK1 VAV3-AS1-201ENST00000438318 619 ntTSL 2 BASIC5.14□□□□□ -1.59
VPS35Q96QK1 NPM1P33-201ENST00000438918 872 ntBASIC5.14□□□□□ -1.59
VPS35Q96QK1 AC092637.1-201ENST00000444745 510 ntTSL 5 BASIC5.14□□□□□ -1.59
VPS35Q96QK1 EEF1B2P5-201ENST00000444820 548 ntBASIC5.14□□□□□ -1.59
VPS35Q96QK1 MYO5BP2-201ENST00000449815 1277 ntBASIC5.14□□□□□ -1.59
VPS35Q96QK1 MTND6P32-201ENST00000457611 483 ntBASIC5.14□□□□□ -1.59
VPS35Q96QK1 RGS1-203ENST00000469578 1034 ntTSL 2 BASIC5.14□□□□□ -1.59
VPS35Q96QK1 NADK2-AS1-201ENST00000501794 720 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
VPS35Q96QK1 AC093763.2-201ENST00000505334 1223 ntBASIC5.14□□□□□ -1.59
VPS35Q96QK1 AC097173.1-201ENST00000505862 819 ntBASIC5.14□□□□□ -1.59
VPS35Q96QK1 AC016559.2-201ENST00000510759 359 ntBASIC5.14□□□□□ -1.59
VPS35Q96QK1 EIF3KP3-201ENST00000514461 639 ntBASIC5.14□□□□□ -1.59
VPS35Q96QK1 AC073023.1-201ENST00000522896 773 ntTSL 5 BASIC5.14□□□□□ -1.59
VPS35Q96QK1 LECT2-205ENST00000522943 574 ntTSL 3 BASIC5.14□□□□□ -1.59
VPS35Q96QK1 CASC19-203ENST00000523510 575 ntTSL 3 BASIC5.14□□□□□ -1.59
VPS35Q96QK1 AC027369.5-201ENST00000533838 755 ntBASIC5.14□□□□□ -1.59
VPS35Q96QK1 AL355112.1-201ENST00000550309 1236 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
VPS35Q96QK1 LINC01580-201ENST00000555255 561 ntTSL 4 BASIC5.14□□□□□ -1.59
VPS35Q96QK1 AC007922.3-201ENST00000581648 543 ntTSL 3 BASIC5.14□□□□□ -1.59
VPS35Q96QK1 AC138473.1-201ENST00000605717 526 ntBASIC5.14□□□□□ -1.59
VPS35Q96QK1 AL121612.2-201ENST00000612261 482 ntBASIC5.14□□□□□ -1.59
VPS35Q96QK1 IL31RA-204ENST00000396834 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC5.14□□□□□ -1.59
VPS35Q96QK1 MTERF1-202ENST00000406735 1639 ntAPPRIS ALT2 TSL 2 BASIC5.14□□□□□ -1.59
VPS35Q96QK1 ERVFRD-3-201ENST00000578561 1617 ntBASIC5.14□□□□□ -1.59
VPS35Q96QK1 TTC39DP-201ENST00000416781 1688 ntBASIC5.14□□□□□ -1.59
VPS35Q96QK1 DCTN4-201ENST00000424236 4054 ntTSL 2 BASIC5.14□□□□□ -1.59
VPS35Q96QK1 ING3-205ENST00000445699 1723 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
VPS35Q96QK1 VNN2-201ENST00000326499 2118 ntAPPRIS P4 TSL 1 (best) BASIC5.14□□□□□ -1.59
VPS35Q96QK1 AHNAK-202ENST00000378024 18787 ntAPPRIS P3 TSL 2 BASIC5.14□□□□□ -1.59
VPS35Q96QK1 TJP1-209ENST00000545208 5007 ntAPPRIS ALT2 TSL 5 BASIC5.13□□□□□ -1.59
VPS35Q96QK1 APAF1-209ENST00000550527 6581 ntAPPRIS ALT1 TSL 1 (best) BASIC5.13□□□□□ -1.59
VPS35Q96QK1 AP002512.4-201ENST00000641310 4672 ntAPPRIS P1 BASIC5.13□□□□□ -1.59
VPS35Q96QK1 AC008079.2-201ENST00000623543 20396 ntBASIC5.13□□□□□ -1.59
VPS35Q96QK1 SKP1-202ENST00000353411 9474 ntAPPRIS P4 TSL 1 (best) BASIC5.13□□□□□ -1.59
VPS35Q96QK1 CDC23-202ENST00000394886 3155 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
VPS35Q96QK1 LCLAT1-203ENST00000379509 4888 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
VPS35Q96QK1 VPS13D-214ENST00000620676 16320 ntAPPRIS P4 TSL 1 (best) BASIC5.13□□□□□ -1.59
VPS35Q96QK1 RNA5SP223-201ENST00000365174 120 ntBASIC5.13□□□□□ -1.59
VPS35Q96QK1 APOA2-201ENST00000367990 474 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
VPS35Q96QK1 DNAJA1P4-201ENST00000406473 1166 ntBASIC5.13□□□□□ -1.59
VPS35Q96QK1 CASKP1-201ENST00000412870 582 ntBASIC5.13□□□□□ -1.59
VPS35Q96QK1 CYP3A43-205ENST00000415413 990 ntTSL 5 BASIC5.13□□□□□ -1.59
VPS35Q96QK1 DDX39BP1-205ENST00000422507 192 ntBASIC5.13□□□□□ -1.59
VPS35Q96QK1 AC009238.2-201ENST00000431026 355 ntBASIC5.13□□□□□ -1.59
VPS35Q96QK1 PARGP1-202ENST00000440803 790 ntTSL 2 BASIC5.13□□□□□ -1.59
VPS35Q96QK1 AC097484.1-201ENST00000471148 389 ntBASIC5.13□□□□□ -1.59
VPS35Q96QK1 APOPT1-204ENST00000473127 739 ntTSL 3 BASIC5.13□□□□□ -1.59
VPS35Q96QK1 RN7SL214P-201ENST00000487317 265 ntBASIC5.13□□□□□ -1.59
VPS35Q96QK1 RN7SL346P-201ENST00000491561 294 ntBASIC5.13□□□□□ -1.59
VPS35Q96QK1 AC010395.1-201ENST00000507627 697 ntTSL 5 BASIC5.13□□□□□ -1.59
VPS35Q96QK1 AP001961.1-201ENST00000515782 526 ntTSL 3 BASIC5.13□□□□□ -1.59
VPS35Q96QK1 BMPR1APS2-201ENST00000527904 1012 ntBASIC5.13□□□□□ -1.59
VPS35Q96QK1 AP000873.2-203ENST00000528524 549 ntTSL 2 BASIC5.13□□□□□ -1.59
VPS35Q96QK1 KCTD21-AS1-206ENST00000532831 856 ntTSL 2 BASIC5.13□□□□□ -1.59
VPS35Q96QK1 AP002373.2-201ENST00000541631 1060 ntBASIC5.13□□□□□ -1.59
VPS35Q96QK1 PRR4-212ENST00000544994 326 ntAPPRIS ALT2 TSL 1 (best) BASIC5.13□□□□□ -1.59
VPS35Q96QK1 AC026401.1-201ENST00000549756 530 ntTSL 3 BASIC5.13□□□□□ -1.59
VPS35Q96QK1 LINC02402-201ENST00000550337 1212 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
VPS35Q96QK1 LINC00687-203ENST00000558175 696 ntTSL 3 BASIC5.13□□□□□ -1.59
VPS35Q96QK1 AC087477.4-201ENST00000560586 542 ntTSL 4 BASIC5.13□□□□□ -1.59
VPS35Q96QK1 AC113418.1-201ENST00000569928 517 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
VPS35Q96QK1 AC010320.2-203ENST00000601745 574 ntTSL 4 BASIC5.13□□□□□ -1.59
VPS35Q96QK1 FAM49B-229ENST00000615041 750 ntTSL 5 BASIC5.13□□□□□ -1.59
VPS35Q96QK1 CCL14-204ENST00000622526 472 ntTSL 3 BASIC5.13□□□□□ -1.59
VPS35Q96QK1 AC015660.5-201ENST00000623238 564 ntBASIC5.13□□□□□ -1.59
VPS35Q96QK1 PCBP1-AS1-278ENST00000625518 864 ntTSL 5 BASIC5.13□□□□□ -1.59
VPS35Q96QK1 FANCI-201ENST00000300027 4713 ntAPPRIS P3 TSL 5 BASIC5.13□□□□□ -1.59
VPS35Q96QK1 SON-204ENST00000381692 2463 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
VPS35Q96QK1 WDR63-201ENST00000294664 2995 ntAPPRIS P3 TSL 1 (best) BASIC5.13□□□□□ -1.59
VPS35Q96QK1 ANO6-205ENST00000441606 5955 ntAPPRIS ALT2 TSL 1 (best) BASIC5.13□□□□□ -1.59
VPS35Q96QK1 PALMD-201ENST00000263174 2510 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
VPS35Q96QK1 DYTN-201ENST00000452335 2051 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
VPS35Q96QK1 MAPK10-349ENST00000641767 3661 ntBASIC5.12□□□□□ -1.59
VPS35Q96QK1 AP001642.1-201ENST00000624727 2117 ntBASIC5.12□□□□□ -1.59
VPS35Q96QK1 AP000808.1-201ENST00000512200 3252 ntTSL 2 BASIC5.12□□□□□ -1.59
VPS35Q96QK1 ANXA1-202ENST00000376911 2209 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
VPS35Q96QK1 AC010531.4-202ENST00000569872 1718 ntTSL 2 BASIC5.12□□□□□ -1.59
VPS35Q96QK1 PCDH15-206ENST00000373965 9237 ntAPPRIS ALT2 TSL 5 BASIC5.12□□□□□ -1.59
VPS35Q96QK1 GTDC1-220ENST00000618778 2317 ntTSL 5 BASIC5.12□□□□□ -1.59
VPS35Q96QK1 SLC1A3-202ENST00000381918 3652 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
VPS35Q96QK1 C4BPAP1-201ENST00000415474 1893 ntBASIC5.12□□□□□ -1.59
VPS35Q96QK1 IFNA10-201ENST00000357374 963 ntAPPRIS P1 BASIC5.12□□□□□ -1.59
VPS35Q96QK1 U8.4-201ENST00000363626 134 ntBASIC5.12□□□□□ -1.59
VPS35Q96QK1 AL353740.1-201ENST00000366253 575 ntTSL 2 BASIC5.12□□□□□ -1.59
VPS35Q96QK1 MIR137-201ENST00000385223 102 ntBASIC5.12□□□□□ -1.59
VPS35Q96QK1 TRAV23DV6-201ENST00000390451 409 ntAPPRIS P1 BASIC5.12□□□□□ -1.59
VPS35Q96QK1 RNU2-22P-201ENST00000411266 212 ntBASIC5.12□□□□□ -1.59
VPS35Q96QK1 LINC00342-201ENST00000412393 654 ntTSL 3 BASIC5.12□□□□□ -1.59
VPS35Q96QK1 AC211486.3-201ENST00000412694 621 ntBASIC5.12□□□□□ -1.59
VPS35Q96QK1 TRBV29-1-201ENST00000422143 402 ntAPPRIS P1 BASIC5.12□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 110.8 ms