Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 AC108161.1-201ENST00000461060 402 ntBASIC4.6□□□□□ -1.67
SKA3Q8IX90 SPTSSB-202ENST00000497137 880 ntAPPRIS P1 TSL 3 BASIC4.6□□□□□ -1.67
SKA3Q8IX90 AC069272.1-201ENST00000514843 680 ntTSL 3 BASIC4.6□□□□□ -1.67
SKA3Q8IX90 AC084024.3-201ENST00000520598 562 ntTSL 4 BASIC4.6□□□□□ -1.67
SKA3Q8IX90 AC068672.2-201ENST00000524022 336 ntTSL 3 BASIC4.6□□□□□ -1.67
SKA3Q8IX90 AC022882.1-201ENST00000532142 501 ntBASIC4.6□□□□□ -1.67
SKA3Q8IX90 LINC02366-202ENST00000541949 696 ntTSL 3 BASIC4.6□□□□□ -1.67
SKA3Q8IX90 AC144548.2-201ENST00000550231 946 ntTSL 3 BASIC4.6□□□□□ -1.67
SKA3Q8IX90 PCED1B-AS1-210ENST00000552975 378 ntTSL 2 BASIC4.6□□□□□ -1.67
SKA3Q8IX90 AL139354.1-201ENST00000554319 645 ntTSL 5 BASIC4.6□□□□□ -1.67
SKA3Q8IX90 AL139022.1-201ENST00000556127 486 ntTSL 5 BASIC4.6□□□□□ -1.67
SKA3Q8IX90 C14orf2-211ENST00000557040 472 ntAPPRIS P1 TSL 3 BASIC4.6□□□□□ -1.67
SKA3Q8IX90 AC109460.2-201ENST00000569974 544 ntTSL 3 BASIC4.6□□□□□ -1.67
SKA3Q8IX90 MTATP6P25-201ENST00000574491 261 ntBASIC4.6□□□□□ -1.67
SKA3Q8IX90 AC011507.1-201ENST00000585364 567 ntTSL 4 BASIC4.6□□□□□ -1.67
SKA3Q8IX90 AC022916.4-201ENST00000585646 475 ntTSL 3 BASIC4.6□□□□□ -1.67
SKA3Q8IX90 AC073254.1-207ENST00000600482 714 ntTSL 5 BASIC4.6□□□□□ -1.67
SKA3Q8IX90 AC008814.1-201ENST00000603797 406 ntBASIC4.6□□□□□ -1.67
SKA3Q8IX90 AC002128.2-201ENST00000604161 618 ntTSL 5 BASIC4.6□□□□□ -1.67
SKA3Q8IX90 AL512329.2-201ENST00000607350 548 ntBASIC4.6□□□□□ -1.67
SKA3Q8IX90 Z98949.1-220ENST00000609809 804 ntTSL 5 BASIC4.6□□□□□ -1.67
SKA3Q8IX90 AL442125.2-201ENST00000619338 418 ntTSL 5 BASIC4.6□□□□□ -1.67
SKA3Q8IX90 MIR6886-201ENST00000619864 61 ntBASIC4.6□□□□□ -1.67
SKA3Q8IX90 MIR6839-201ENST00000620425 113 ntBASIC4.6□□□□□ -1.67
SKA3Q8IX90 RUVBL2-214ENST00000640699 153 ntTSL 5 BASIC4.6□□□□□ -1.67
SKA3Q8IX90 C11orf65-208ENST00000615746 2711 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
SKA3Q8IX90 DAOA-211ENST00000618629 1368 ntAPPRIS P3 TSL 5 BASIC4.6□□□□□ -1.67
SKA3Q8IX90 FAM196B-201ENST00000377365 2999 ntAPPRIS P1 TSL 2 BASIC4.6□□□□□ -1.67
SKA3Q8IX90 AC011900.1-201ENST00000446838 2999 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
SKA3Q8IX90 BANK1-203ENST00000444316 3141 ntTSL 2 BASIC4.6□□□□□ -1.67
SKA3Q8IX90 ERVFRD-3-201ENST00000578561 1617 ntBASIC4.6□□□□□ -1.67
SKA3Q8IX90 AC011493.1-201ENST00000596753 1632 ntBASIC4.6□□□□□ -1.67
SKA3Q8IX90 RLIM-201ENST00000332687 8317 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
SKA3Q8IX90 PLCE1-202ENST00000371380 12024 ntAPPRIS P3 TSL 1 (best) BASIC4.6□□□□□ -1.67
SKA3Q8IX90 AC010531.4-202ENST00000569872 1718 ntTSL 2 BASIC4.6□□□□□ -1.67
SKA3Q8IX90 C6orf10-210ENST00000617061 1904 ntAPPRIS ALT2 TSL 5 BASIC4.6□□□□□ -1.67
SKA3Q8IX90 SCN1A-202ENST00000375405 8097 ntAPPRIS P3 TSL 5 BASIC4.6□□□□□ -1.67
SKA3Q8IX90 MED13-201ENST00000397786 10465 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.67
SKA3Q8IX90 OR10A3-202ENST00000642047 2650 ntAPPRIS P1 BASIC4.59□□□□□ -1.67
SKA3Q8IX90 ZNF418-205ENST00000595830 3543 ntAPPRIS P3 TSL 1 (best) BASIC4.59□□□□□ -1.67
SKA3Q8IX90 ZNF28-203ENST00000438150 5171 ntTSL 2 BASIC4.59□□□□□ -1.67
SKA3Q8IX90 LAMTOR3-201ENST00000226522 1220 ntTSL 3 BASIC4.59□□□□□ -1.67
SKA3Q8IX90 LMNTD1-201ENST00000282881 1718 ntAPPRIS P3 TSL 2 BASIC4.59□□□□□ -1.67
SKA3Q8IX90 FANCI-201ENST00000300027 4713 ntAPPRIS P3 TSL 5 BASIC4.59□□□□□ -1.67
SKA3Q8IX90 U3.2-201ENST00000362981 210 ntBASIC4.59□□□□□ -1.67
SKA3Q8IX90 RNA5SP90-201ENST00000364801 99 ntBASIC4.59□□□□□ -1.67
SKA3Q8IX90 LINC01317-201ENST00000366209 779 ntTSL 5 BASIC4.59□□□□□ -1.67
SKA3Q8IX90 AC007618.1-201ENST00000366455 732 ntBASIC4.59□□□□□ -1.67
SKA3Q8IX90 WDR63-203ENST00000370596 2905 ntAPPRIS ALT2 TSL 5 BASIC4.59□□□□□ -1.67
SKA3Q8IX90 SAR1A-201ENST00000373236 437 ntTSL 1 (best) BASIC4.59□□□□□ -1.67
SKA3Q8IX90 OR8V1P-201ENST00000395193 873 ntBASIC4.59□□□□□ -1.67
SKA3Q8IX90 IL31RA-204ENST00000396834 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC4.59□□□□□ -1.67
SKA3Q8IX90 IL6-203ENST00000401651 539 ntTSL 2 BASIC4.59□□□□□ -1.67
SKA3Q8IX90 AC233289.1-201ENST00000403700 508 ntBASIC4.59□□□□□ -1.67
SKA3Q8IX90 NT5C3A-206ENST00000409787 840 ntTSL 2 BASIC4.59□□□□□ -1.67
SKA3Q8IX90 AF015720.1-201ENST00000412240 349 ntTSL 3 BASIC4.59□□□□□ -1.67
SKA3Q8IX90 AC098592.2-201ENST00000413158 265 ntBASIC4.59□□□□□ -1.67
SKA3Q8IX90 AC096644.3-201ENST00000416788 338 ntBASIC4.59□□□□□ -1.67
SKA3Q8IX90 AL161722.2-201ENST00000434731 981 ntBASIC4.59□□□□□ -1.67
SKA3Q8IX90 Z82198.2-201ENST00000434741 567 ntTSL 4 BASIC4.59□□□□□ -1.67
SKA3Q8IX90 OR52B5P-201ENST00000435337 951 ntBASIC4.59□□□□□ -1.67
SKA3Q8IX90 LINC00969-211ENST00000438608 525 ntTSL 5 BASIC4.59□□□□□ -1.67
SKA3Q8IX90 AL139120.1-201ENST00000443652 358 ntTSL 3 BASIC4.59□□□□□ -1.67
SKA3Q8IX90 AL592431.1-201ENST00000451090 317 ntTSL 3 BASIC4.59□□□□□ -1.67
SKA3Q8IX90 PRPF38AP1-201ENST00000451976 933 ntBASIC4.59□□□□□ -1.67
SKA3Q8IX90 RN7SL189P-201ENST00000468631 289 ntBASIC4.59□□□□□ -1.67
SKA3Q8IX90 RN7SL814P-201ENST00000487715 300 ntBASIC4.59□□□□□ -1.67
SKA3Q8IX90 CFAP44-AS1-202ENST00000498480 686 ntTSL 3 BASIC4.59□□□□□ -1.67
SKA3Q8IX90 AC006427.1-201ENST00000514359 712 ntBASIC4.59□□□□□ -1.67
SKA3Q8IX90 RNU6-551P-201ENST00000516661 103 ntBASIC4.59□□□□□ -1.67
SKA3Q8IX90 AC012400.1-201ENST00000518452 381 ntBASIC4.59□□□□□ -1.67
SKA3Q8IX90 CPSF7-220ENST00000541963 549 ntTSL 4 BASIC4.59□□□□□ -1.67
SKA3Q8IX90 CACNA1C-IT1-201ENST00000542984 687 ntTSL 3 BASIC4.59□□□□□ -1.67
SKA3Q8IX90 LINC02446-201ENST00000544591 868 ntTSL 2 BASIC4.59□□□□□ -1.67
SKA3Q8IX90 AC006349.1-201ENST00000555526 235 ntBASIC4.59□□□□□ -1.67
SKA3Q8IX90 NQO1-206ENST00000564043 892 ntTSL 1 (best) BASIC4.59□□□□□ -1.67
SKA3Q8IX90 RN7SL708P-201ENST00000580952 299 ntBASIC4.59□□□□□ -1.67
SKA3Q8IX90 LINC01676-204ENST00000595309 871 ntTSL 5 BASIC4.59□□□□□ -1.67
SKA3Q8IX90 AC021205.3-201ENST00000609680 1709 ntTSL 3 BASIC4.59□□□□□ -1.67
SKA3Q8IX90 AL391597.1-201ENST00000618707 694 ntBASIC4.59□□□□□ -1.67
SKA3Q8IX90 AC008115.4-201ENST00000619780 775 ntBASIC4.59□□□□□ -1.67
SKA3Q8IX90 LINC00284-211ENST00000620454 534 ntTSL 4 BASIC4.59□□□□□ -1.67
SKA3Q8IX90 AC074140.1-201ENST00000621617 208 ntBASIC4.59□□□□□ -1.67
SKA3Q8IX90 AC079298.3-203ENST00000623269 555 ntTSL 3 BASIC4.59□□□□□ -1.67
SKA3Q8IX90 OR52B5P-202ENST00000641118 1110 ntBASIC4.59□□□□□ -1.67
SKA3Q8IX90 SMAD4-202ENST00000398417 8495 ntAPPRIS P1 TSL 5 BASIC4.59□□□□□ -1.67
SKA3Q8IX90 ANKRD36B-202ENST00000359901 4297 ntAPPRIS P1 TSL 5 BASIC4.59□□□□□ -1.68
SKA3Q8IX90 POF1B-201ENST00000262753 3941 ntAPPRIS P3 TSL 1 (best) BASIC4.59□□□□□ -1.68
SKA3Q8IX90 SRSF11-201ENST00000370949 3034 ntTSL 1 (best) BASIC4.59□□□□□ -1.68
SKA3Q8IX90 AFTPH-204ENST00000409933 2811 ntAPPRIS ALT1 TSL 1 (best) BASIC4.59□□□□□ -1.68
SKA3Q8IX90 AGO3-203ENST00000373191 19687 ntAPPRIS P1 TSL 2 BASIC4.59□□□□□ -1.68
SKA3Q8IX90 DYNAP-201ENST00000321600 2027 ntAPPRIS P3 TSL 2 BASIC4.58□□□□□ -1.68
SKA3Q8IX90 HEATR5A-203ENST00000543095 7840 ntAPPRIS P1 TSL 5 BASIC4.58□□□□□ -1.68
SKA3Q8IX90 Z95327.2-201ENST00000414579 1873 ntBASIC4.58□□□□□ -1.68
SKA3Q8IX90 ADGRL2-204ENST00000370715 5585 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
SKA3Q8IX90 MED12L-201ENST00000273432 6401 ntTSL 2 BASIC4.58□□□□□ -1.68
SKA3Q8IX90 AL672167.1-204ENST00000641875 3017 ntBASIC4.58□□□□□ -1.68
SKA3Q8IX90 FGD4-210ENST00000525053 2925 ntTSL 2 BASIC4.58□□□□□ -1.68
SKA3Q8IX90 C2CD6-202ENST00000439140 5512 ntAPPRIS ALT2 TSL 1 (best) BASIC4.58□□□□□ -1.68
SKA3Q8IX90 FAM26D-201ENST00000368596 1353 ntAPPRIS P1 TSL 5 BASIC4.58□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 107.1 ms