Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 KCNMB2-210ENST00000617329 2214 ntTSL 2 BASIC6.23□□□□□ -1.41
RNF4P78317 SMARCE1-208ENST00000474246 2124 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
RNF4P78317 TRPM6-202ENST00000360774 8425 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
RNF4P78317 LCP2-206ENST00000521416 1599 ntTSL 2 BASIC6.23□□□□□ -1.41
RNF4P78317 AC079949.2-201ENST00000617117 2933 ntBASIC6.23□□□□□ -1.41
RNF4P78317 COMMD2-203ENST00000473414 3706 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
RNF4P78317 CDKAL1-201ENST00000274695 3272 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
RNF4P78317 AC019117.1-201ENST00000636929 1462 ntTSL 5 BASIC6.23□□□□□ -1.41
RNF4P78317 FYB1-209ENST00000512982 2747 ntAPPRIS ALT2 TSL 2 BASIC6.23□□□□□ -1.41
RNF4P78317 GPCPD1-201ENST00000379019 5489 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
RNF4P78317 GBA3-206ENST00000610628 2154 ntAPPRIS ALT2 TSL 5 BASIC6.23□□□□□ -1.41
RNF4P78317 EOGT-201ENST00000295571 4138 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
RNF4P78317 AMOT-206ENST00000524145 3330 ntAPPRIS ALT2 TSL 5 BASIC6.23□□□□□ -1.41
RNF4P78317 IL5RA-209ENST00000446632 2514 ntAPPRIS P4 TSL 5 BASIC6.23□□□□□ -1.41
RNF4P78317 TRAPPC11-209ENST00000512476 2546 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
RNF4P78317 RASGRF1-201ENST00000394745 2850 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
RNF4P78317 HAVCR1-204ENST00000522693 1713 ntAPPRIS ALT2 TSL 2 BASIC6.23□□□□□ -1.41
RNF4P78317 BTLA-201ENST00000334529 3213 ntAPPRIS P3 TSL 1 (best) BASIC6.23□□□□□ -1.41
RNF4P78317 AC103591.2-201ENST00000265259 766 ntBASIC6.23□□□□□ -1.41
RNF4P78317 OR5B2-201ENST00000302581 1049 ntAPPRIS P1 BASIC6.23□□□□□ -1.41
RNF4P78317 AC010894.1-201ENST00000313760 361 ntBASIC6.23□□□□□ -1.41
RNF4P78317 RNA5SP321-201ENST00000362722 111 ntBASIC6.23□□□□□ -1.41
RNF4P78317 IFNA21-201ENST00000380225 1024 ntAPPRIS P1 BASIC6.23□□□□□ -1.41
RNF4P78317 MIR217-201ENST00000384817 110 ntBASIC6.23□□□□□ -1.41
RNF4P78317 PRR21-201ENST00000408934 1170 ntAPPRIS P1 BASIC6.23□□□□□ -1.41
RNF4P78317 AP001599.1-201ENST00000426771 361 ntTSL 3 BASIC6.23□□□□□ -1.41
RNF4P78317 AL606534.4-201ENST00000427176 792 ntTSL 5 BASIC6.23□□□□□ -1.41
RNF4P78317 OFD1P12Y-201ENST00000427963 1207 ntBASIC6.23□□□□□ -1.41
RNF4P78317 AC116038.1-201ENST00000432250 408 ntTSL 3 BASIC6.23□□□□□ -1.41
RNF4P78317 PCYT1B-AS1-201ENST00000432626 275 ntTSL 2 BASIC6.23□□□□□ -1.41
RNF4P78317 PPIAP17-201ENST00000438507 471 ntBASIC6.23□□□□□ -1.41
RNF4P78317 LMCD1-AS1-202ENST00000439407 576 ntTSL 4 BASIC6.23□□□□□ -1.41
RNF4P78317 AC005487.1-201ENST00000440208 665 ntTSL 5 BASIC6.23□□□□□ -1.41
RNF4P78317 ARAFP2-201ENST00000440565 559 ntBASIC6.23□□□□□ -1.41
RNF4P78317 PA2G4P1-201ENST00000442248 1197 ntBASIC6.23□□□□□ -1.41
RNF4P78317 AC016908.1-201ENST00000442571 1219 ntBASIC6.23□□□□□ -1.41
RNF4P78317 AL512326.1-201ENST00000443050 721 ntBASIC6.23□□□□□ -1.41
RNF4P78317 LIX1L-AS1-206ENST00000447686 846 ntTSL 2 BASIC6.23□□□□□ -1.41
RNF4P78317 RBMY3AP-201ENST00000449381 1145 ntBASIC6.23□□□□□ -1.41
RNF4P78317 AL355592.1-201ENST00000450292 386 ntTSL 2 BASIC6.23□□□□□ -1.41
RNF4P78317 AL137802.1-201ENST00000452795 327 ntTSL 5 BASIC6.23□□□□□ -1.41
RNF4P78317 AC239798.3-201ENST00000454459 408 ntBASIC6.23□□□□□ -1.41
RNF4P78317 AL359095.1-201ENST00000457383 635 ntTSL 3 BASIC6.23□□□□□ -1.41
RNF4P78317 RPL7P48-201ENST00000461513 746 ntBASIC6.23□□□□□ -1.41
RNF4P78317 AP003385.3-201ENST00000472498 287 ntBASIC6.23□□□□□ -1.41
RNF4P78317 AC004924.1-201ENST00000480160 781 ntBASIC6.23□□□□□ -1.41
RNF4P78317 SCG5-207ENST00000497208 949 ntTSL 5 BASIC6.23□□□□□ -1.41
RNF4P78317 AC104071.1-201ENST00000505636 602 ntTSL 3 BASIC6.23□□□□□ -1.41
RNF4P78317 PRDX4P1-201ENST00000507189 574 ntBASIC6.23□□□□□ -1.41
RNF4P78317 AC139713.2-204ENST00000511042 342 ntTSL 5 BASIC6.23□□□□□ -1.41
RNF4P78317 AC097460.1-204ENST00000515026 764 ntTSL 5 BASIC6.23□□□□□ -1.41
RNF4P78317 MRPS5P3-201ENST00000515577 166 ntBASIC6.23□□□□□ -1.41
RNF4P78317 RN7SKP298-201ENST00000515950 94 ntBASIC6.23□□□□□ -1.41
RNF4P78317 RNY4P37-201ENST00000516225 96 ntBASIC6.23□□□□□ -1.41
RNF4P78317 AC027031.1-201ENST00000517318 489 ntTSL 3 BASIC6.23□□□□□ -1.41
RNF4P78317 AZIN1-AS1-208ENST00000519257 619 ntTSL 3 BASIC6.23□□□□□ -1.41
RNF4P78317 TRDV3-201ENST00000535880 425 ntAPPRIS P1 BASIC6.23□□□□□ -1.41
RNF4P78317 AC027667.1-201ENST00000545814 304 ntBASIC6.23□□□□□ -1.41
RNF4P78317 LINC02392-202ENST00000549313 574 ntTSL 4 BASIC6.23□□□□□ -1.41
RNF4P78317 NUDT7-206ENST00000568787 678 ntTSL 2 BASIC6.23□□□□□ -1.41
RNF4P78317 MIR4528-201ENST00000577763 90 ntBASIC6.23□□□□□ -1.41
RNF4P78317 AC005154.1-222ENST00000579024 341 ntTSL 5 BASIC6.23□□□□□ -1.41
RNF4P78317 SNORD39.2-201ENST00000579995 76 ntBASIC6.23□□□□□ -1.41
RNF4P78317 AC024267.2-201ENST00000582737 417 ntBASIC6.23□□□□□ -1.41
RNF4P78317 AC023421.2-202ENST00000586213 547 ntTSL 3 BASIC6.23□□□□□ -1.41
RNF4P78317 AC020914.2-201ENST00000598220 430 ntTSL 4 BASIC6.23□□□□□ -1.41
RNF4P78317 OR5AK4P-201ENST00000635912 903 ntBASIC6.23□□□□□ -1.41
RNF4P78317 CLIP4-202ENST00000401605 2322 ntTSL 2 BASIC6.23□□□□□ -1.41
RNF4P78317 SLF2-202ENST00000370269 3712 ntAPPRIS ALT2 TSL 1 (best) BASIC6.23□□□□□ -1.41
RNF4P78317 NRP1-205ENST00000374823 3737 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
RNF4P78317 FLG-201ENST00000368799 12747 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
RNF4P78317 LGALSL-202ENST00000409537 3298 ntTSL 5 BASIC6.23□□□□□ -1.41
RNF4P78317 OR2AT4-202ENST00000641504 8661 ntAPPRIS P1 BASIC6.23□□□□□ -1.41
RNF4P78317 MTCO1P23-201ENST00000415223 1526 ntBASIC6.23□□□□□ -1.41
RNF4P78317 AMY1B-202ENST00000370080 1787 ntAPPRIS P1 TSL 2 BASIC6.23□□□□□ -1.41
RNF4P78317 FGA-201ENST00000302053 3678 ntAPPRIS P1 TSL 2 BASIC6.23□□□□□ -1.41
RNF4P78317 RFTN2-201ENST00000295049 5827 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
RNF4P78317 SEC61A2-202ENST00000304267 2030 ntTSL 2 BASIC6.23□□□□□ -1.41
RNF4P78317 AC093155.3-201ENST00000370548 2013 ntAPPRIS P1 TSL 2 BASIC6.23□□□□□ -1.41
RNF4P78317 AP000432.2-201ENST00000624164 2048 ntBASIC6.23□□□□□ -1.41
RNF4P78317 CASC19-260ENST00000641828 2001 ntBASIC6.23□□□□□ -1.41
RNF4P78317 OR2M3-202ENST00000641626 9913 ntAPPRIS P1 BASIC6.23□□□□□ -1.41
RNF4P78317 MTND5P23-201ENST00000430812 1655 ntBASIC6.23□□□□□ -1.41
RNF4P78317 LINC01505-203ENST00000435485 1686 ntTSL 5 BASIC6.23□□□□□ -1.41
RNF4P78317 CASC18-202ENST00000548557 2503 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
RNF4P78317 NEK11-207ENST00000508196 1938 ntAPPRIS P3 TSL 2 BASIC6.23□□□□□ -1.41
RNF4P78317 CCR9-204ENST00000422395 1331 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
RNF4P78317 RGS22-215ENST00000523437 3975 ntAPPRIS ALT2 TSL 1 (best) BASIC6.23□□□□□ -1.41
RNF4P78317 AC119674.1-204ENST00000641348 1343 ntBASIC6.23□□□□□ -1.41
RNF4P78317 STIL-201ENST00000337817 5087 ntAPPRIS ALT2 TSL 5 BASIC6.23□□□□□ -1.41
RNF4P78317 RACGAP1-221ENST00000551016 2193 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
RNF4P78317 ATXN2-202ENST00000389153 3854 ntAPPRIS ALT2 TSL 5 BASIC6.23□□□□□ -1.41
RNF4P78317 GFPT1-202ENST00000361060 8632 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
RNF4P78317 MECOM-202ENST00000433243 3508 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
RNF4P78317 CDC42BPA-201ENST00000334218 10134 ntTSL 5 BASIC6.22□□□□□ -1.41
RNF4P78317 MTAP-210ENST00000580900 7557 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
RNF4P78317 THAP6-202ENST00000380837 3423 ntAPPRIS ALT2 TSL 1 (best) BASIC6.22□□□□□ -1.41
RNF4P78317 ABI1-207ENST00000376142 3576 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
RNF4P78317 DCSTAMP-201ENST00000297581 1953 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
RNF4P78317 SMARCA2-201ENST00000302401 2242 ntTSL 2 BASIC6.22□□□□□ -1.41
Retrieved 100 of 98,524 protein–RNA pairs in 75 ms