Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 AL391807.1-202ENST00000419979 534 ntTSL 2 BASIC5.25□□□□□ -1.57
COL4A4P53420 RPL7P32-201ENST00000457119 744 ntBASIC5.25□□□□□ -1.57
COL4A4P53420 AC022034.3-201ENST00000471393 478 ntBASIC5.25□□□□□ -1.57
COL4A4P53420 STK26-205ENST00000496850 1186 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
COL4A4P53420 RERGL-203ENST00000538724 973 ntAPPRIS P1 TSL 2 BASIC5.25□□□□□ -1.57
COL4A4P53420 AC026401.1-201ENST00000549756 530 ntTSL 3 BASIC5.25□□□□□ -1.57
COL4A4P53420 AL121890.3-201ENST00000618494 516 ntBASIC5.25□□□□□ -1.57
COL4A4P53420 AC004160.1-201ENST00000625468 929 ntTSL 5 BASIC5.25□□□□□ -1.57
COL4A4P53420 SDC2-204ENST00000519914 1318 ntTSL 2 BASIC5.25□□□□□ -1.57
COL4A4P53420 ZNF571-201ENST00000328550 4113 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
COL4A4P53420 C9orf72-203ENST00000380003 3200 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
COL4A4P53420 STS-201ENST00000217961 6521 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
COL4A4P53420 AC092329.3-201ENST00000611392 1904 ntAPPRIS P1 TSL 5 BASIC5.25□□□□□ -1.57
COL4A4P53420 MTERF1-201ENST00000351870 1997 ntAPPRIS P3 TSL 1 (best) BASIC5.25□□□□□ -1.57
COL4A4P53420 AC005005.4-201ENST00000623789 16698 ntBASIC5.25□□□□□ -1.57
COL4A4P53420 PDGFRA-201ENST00000257290 6576 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
COL4A4P53420 LINC01043-201ENST00000565936 6897 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
COL4A4P53420 RAB27B-201ENST00000262094 7281 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
COL4A4P53420 LINC01923-203ENST00000456248 2528 ntTSL 2 BASIC5.25□□□□□ -1.57
COL4A4P53420 BX088651.2-201ENST00000425493 3614 ntTSL 2 BASIC5.24□□□□□ -1.57
COL4A4P53420 MIR23B-201ENST00000384832 97 ntBASIC5.24□□□□□ -1.57
COL4A4P53420 MIR298-201ENST00000401212 88 ntBASIC5.24□□□□□ -1.57
COL4A4P53420 RNU6ATAC34P-201ENST00000408879 121 ntBASIC5.24□□□□□ -1.57
COL4A4P53420 AC023141.6-201ENST00000429418 337 ntBASIC5.24□□□□□ -1.57
COL4A4P53420 AL162384.1-201ENST00000437881 499 ntTSL 2 BASIC5.24□□□□□ -1.57
COL4A4P53420 AC016831.4-201ENST00000438302 307 ntBASIC5.24□□□□□ -1.57
COL4A4P53420 AC017101.1-201ENST00000453665 571 ntTSL 4 BASIC5.24□□□□□ -1.57
COL4A4P53420 RNA5SP230-201ENST00000517039 122 ntBASIC5.24□□□□□ -1.57
COL4A4P53420 AC019209.2-201ENST00000545704 373 ntTSL 3 BASIC5.24□□□□□ -1.57
COL4A4P53420 AP000619.2-201ENST00000546014 969 ntBASIC5.24□□□□□ -1.57
COL4A4P53420 BNIP3P5-201ENST00000562290 498 ntBASIC5.24□□□□□ -1.57
COL4A4P53420 AL031600.2-201ENST00000563223 307 ntTSL 5 BASIC5.24□□□□□ -1.57
COL4A4P53420 AC005154.1-213ENST00000578572 445 ntTSL 3 BASIC5.24□□□□□ -1.57
COL4A4P53420 AC092683.1-209ENST00000612970 1105 ntTSL 5 BASIC5.24□□□□□ -1.57
COL4A4P53420 MIR6716-201ENST00000613413 80 ntBASIC5.24□□□□□ -1.57
COL4A4P53420 AC134980.1-203ENST00000640541 570 ntTSL 4 BASIC5.24□□□□□ -1.57
COL4A4P53420 IKZF2-210ENST00000451136 9344 ntTSL 5 BASIC5.24□□□□□ -1.57
COL4A4P53420 ATF2-201ENST00000264110 4176 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
COL4A4P53420 NCLP2-201ENST00000416078 1462 ntBASIC5.24□□□□□ -1.57
COL4A4P53420 CD80-204ENST00000478182 1491 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
COL4A4P53420 AP000473.2-201ENST00000602659 1537 ntBASIC5.24□□□□□ -1.57
COL4A4P53420 SLC4A10-202ENST00000375514 5710 ntAPPRIS ALT1 TSL 2 BASIC5.24□□□□□ -1.57
COL4A4P53420 VPS50-220ENST00000544910 5736 ntTSL 2 BASIC5.24□□□□□ -1.57
COL4A4P53420 FRYL-209ENST00000506685 1940 ntTSL 5 BASIC5.24□□□□□ -1.57
COL4A4P53420 CENPI-204ENST00000423383 2314 ntAPPRIS P3 TSL 5 BASIC5.24□□□□□ -1.57
COL4A4P53420 MTRR-202ENST00000440940 3215 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
COL4A4P53420 FLRT3-202ENST00000378053 4776 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
COL4A4P53420 PROM1-220ENST00000540805 3908 ntAPPRIS ALT2 TSL 5 BASIC5.24□□□□□ -1.57
COL4A4P53420 FAM111B-206ENST00000620384 3405 ntAPPRIS P1 TSL 2 BASIC5.24□□□□□ -1.57
COL4A4P53420 MSANTD2-204ENST00000526629 3086 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
COL4A4P53420 SYCP1-209ENST00000613524 3034 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
COL4A4P53420 ITGA1-201ENST00000282588 10757 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
COL4A4P53420 LRRC37A-203ENST00000496930 3860 ntTSL 2 BASIC5.24□□□□□ -1.57
COL4A4P53420 RNA5SP388-201ENST00000362584 119 ntBASIC5.24□□□□□ -1.57
COL4A4P53420 SNX10-204ENST00000409838 944 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
COL4A4P53420 LINC01341-201ENST00000419361 552 ntTSL 2 BASIC5.24□□□□□ -1.57
COL4A4P53420 AL672277.1-201ENST00000420865 588 ntTSL 2 BASIC5.24□□□□□ -1.57
COL4A4P53420 TRGV7-201ENST00000427089 353 ntBASIC5.24□□□□□ -1.57
COL4A4P53420 RPS27AP12-201ENST00000429552 465 ntBASIC5.24□□□□□ -1.57
COL4A4P53420 AC136489.1-201ENST00000438181 717 ntTSL 3 BASIC5.24□□□□□ -1.57
COL4A4P53420 GNPDA2-202ENST00000507534 1050 ntTSL 2 BASIC5.24□□□□□ -1.57
COL4A4P53420 AL033397.2-201ENST00000508884 547 ntTSL 2 BASIC5.24□□□□□ -1.57
COL4A4P53420 OR52Z1-201ENST00000510471 897 ntAPPRIS P1 BASIC5.24□□□□□ -1.57
COL4A4P53420 AC096759.1-201ENST00000510744 473 ntTSL 3 BASIC5.24□□□□□ -1.57
COL4A4P53420 NPM1P6-201ENST00000521088 871 ntBASIC5.24□□□□□ -1.57
COL4A4P53420 PRR4-212ENST00000544994 326 ntAPPRIS ALT2 TSL 1 (best) BASIC5.24□□□□□ -1.57
COL4A4P53420 BCAR4-204ENST00000573319 1273 ntTSL 5 BASIC5.24□□□□□ -1.57
COL4A4P53420 AP005119.2-201ENST00000579735 1105 ntBASIC5.24□□□□□ -1.57
COL4A4P53420 MYO3A-203ENST00000376302 2723 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
COL4A4P53420 ST6GALNAC3-201ENST00000328299 6861 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
COL4A4P53420 DMXL1-215ENST00000539542 11236 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
COL4A4P53420 ARHGEF6-203ENST00000370622 4779 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
COL4A4P53420 EXOC1-202ENST00000349598 3248 ntAPPRIS ALT1 TSL 2 BASIC5.23□□□□□ -1.57
COL4A4P53420 NR3C2-202ENST00000344721 5712 ntAPPRIS P1 TSL 5 BASIC5.23□□□□□ -1.57
COL4A4P53420 MDM4-203ENST00000367182 10073 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
COL4A4P53420 GIGYF2-246ENST00000629305 7878 ntTSL 5 BASIC5.23□□□□□ -1.57
COL4A4P53420 CFH-201ENST00000359637 1454 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
COL4A4P53420 RBPJP2-201ENST00000618187 1444 ntBASIC5.23□□□□□ -1.57
COL4A4P53420 UNC13B-209ENST00000635942 14550 ntAPPRIS ALT2 TSL 5 BASIC5.23□□□□□ -1.57
COL4A4P53420 BDNF-210ENST00000438929 4059 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
COL4A4P53420 NDUFS1-201ENST00000233190 11819 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
COL4A4P53420 LRRC37BP1-201ENST00000398851 714 ntBASIC5.23□□□□□ -1.57
COL4A4P53420 HMGB1P4-201ENST00000455362 567 ntBASIC5.23□□□□□ -1.57
COL4A4P53420 SSR3-206ENST00000476217 807 ntTSL 3 BASIC5.23□□□□□ -1.57
COL4A4P53420 AC104971.1-201ENST00000495117 578 ntBASIC5.23□□□□□ -1.57
COL4A4P53420 MIR100HG-221ENST00000534297 572 ntTSL 4 BASIC5.23□□□□□ -1.57
COL4A4P53420 GLRXP2-201ENST00000555594 321 ntBASIC5.23□□□□□ -1.57
COL4A4P53420 AC040173.1-201ENST00000572479 580 ntTSL 4 BASIC5.23□□□□□ -1.57
COL4A4P53420 CCDC178-208ENST00000579916 1017 ntAPPRIS ALT2 TSL 5 BASIC5.23□□□□□ -1.57
COL4A4P53420 AC006504.2-201ENST00000589471 458 ntTSL 3 BASIC5.23□□□□□ -1.57
COL4A4P53420 AL356218.2-201ENST00000605264 187 ntBASIC5.23□□□□□ -1.57
COL4A4P53420 LINC02335-201ENST00000616578 659 ntTSL 3 BASIC5.23□□□□□ -1.57
COL4A4P53420 AC087633.2-201ENST00000618611 725 ntTSL 3 BASIC5.23□□□□□ -1.57
COL4A4P53420 HMGN2-210ENST00000619352 1148 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
COL4A4P53420 BX005214.3-202ENST00000619809 325 ntBASIC5.23□□□□□ -1.57
COL4A4P53420 MED1-201ENST00000300651 5844 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
COL4A4P53420 FAM47E-202ENST00000502320 6249 ntAPPRIS ALT2 TSL 2 BASIC5.23□□□□□ -1.57
COL4A4P53420 OR52A5-201ENST00000307388 3973 ntAPPRIS P1 BASIC5.23□□□□□ -1.57
COL4A4P53420 POF1B-201ENST00000262753 3941 ntAPPRIS P3 TSL 1 (best) BASIC5.23□□□□□ -1.57
COL4A4P53420 HCG18-237ENST00000444126 4605 ntTSL 5 BASIC5.23□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 71.2 ms