Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 LINC00535-203ENST00000520096 790 ntTSL 3 BASIC5.22□□□□□ -1.57
MSH3P20585 IGHVIII-67-4-201ENST00000524281 296 ntBASIC5.22□□□□□ -1.57
MSH3P20585 AC027369.5-201ENST00000533838 755 ntBASIC5.22□□□□□ -1.57
MSH3P20585 RERGL-202ENST00000536890 367 ntTSL 3 BASIC5.22□□□□□ -1.57
MSH3P20585 HNF1A-AS1-203ENST00000537361 659 ntTSL 3 BASIC5.22□□□□□ -1.57
MSH3P20585 CPSF7-220ENST00000541963 549 ntTSL 4 BASIC5.22□□□□□ -1.57
MSH3P20585 TRDN-205ENST00000546248 1179 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
MSH3P20585 AC078909.1-201ENST00000559509 464 ntTSL 2 BASIC5.22□□□□□ -1.57
MSH3P20585 AC109460.2-201ENST00000569974 544 ntTSL 3 BASIC5.22□□□□□ -1.57
MSH3P20585 AC015912.1-201ENST00000574826 538 ntTSL 3 BASIC5.22□□□□□ -1.57
MSH3P20585 AL353770.4-201ENST00000614936 468 ntTSL 5 BASIC5.22□□□□□ -1.57
MSH3P20585 AL590491.2-203ENST00000614969 468 ntTSL 4 BASIC5.22□□□□□ -1.57
MSH3P20585 AC253576.2-201ENST00000618815 580 ntBASIC5.22□□□□□ -1.57
MSH3P20585 AP002505.2-201ENST00000623585 696 ntBASIC5.22□□□□□ -1.57
MSH3P20585 AC119674.1-220ENST00000641502 1048 ntBASIC5.22□□□□□ -1.57
MSH3P20585 SRRM1-202ENST00000374389 3110 ntAPPRIS ALT2 TSL 5 BASIC5.22□□□□□ -1.57
MSH3P20585 LMNTD1-201ENST00000282881 1718 ntAPPRIS P3 TSL 2 BASIC5.22□□□□□ -1.57
MSH3P20585 TMEM154-201ENST00000304385 10698 ntAPPRIS P2 TSL 1 (best) BASIC5.22□□□□□ -1.57
MSH3P20585 MRPL35-202ENST00000337109 3727 ntAPPRIS P4 TSL 1 (best) BASIC5.22□□□□□ -1.57
MSH3P20585 SCN3A-203ENST00000409101 6599 ntAPPRIS ALT1 TSL 1 (best) BASIC5.22□□□□□ -1.57
MSH3P20585 CLEC12A-203ENST00000355690 1428 ntAPPRIS ALT2 TSL 1 (best) BASIC5.22□□□□□ -1.57
MSH3P20585 SCN1A-218ENST00000640036 8131 ntAPPRIS ALT1 TSL 5 BASIC5.22□□□□□ -1.57
MSH3P20585 SELL-201ENST00000236147 2436 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
MSH3P20585 CFAP47-203ENST00000378653 9943 ntAPPRIS P2 TSL 5 BASIC5.22□□□□□ -1.57
MSH3P20585 MUC12-202ENST00000379442 16737 ntAPPRIS ALT2 TSL 5 BASIC5.21□□□□□ -1.57
MSH3P20585 AC011755.1-201ENST00000623763 2049 ntBASIC5.21□□□□□ -1.57
MSH3P20585 ZNF83-202ENST00000536937 2726 ntAPPRIS P1 TSL 2 BASIC5.21□□□□□ -1.58
MSH3P20585 PIGK-203ENST00000445065 4318 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
MSH3P20585 CD47-201ENST00000355354 5020 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
MSH3P20585 CNTN1-202ENST00000348761 3328 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
MSH3P20585 TMLHE-AS1-201ENST00000433624 1702 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
MSH3P20585 NAP1L4P1-201ENST00000319092 1157 ntBASIC5.21□□□□□ -1.58
MSH3P20585 OR14A2-201ENST00000366485 945 ntAPPRIS P1 BASIC5.21□□□□□ -1.58
MSH3P20585 PAGE2B-202ENST00000374974 456 ntTSL 5 BASIC5.21□□□□□ -1.58
MSH3P20585 MIR223-201ENST00000385204 110 ntBASIC5.21□□□□□ -1.58
MSH3P20585 NRG4-201ENST00000394907 1159 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
MSH3P20585 GNRH1-202ENST00000421054 470 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
MSH3P20585 LINC02257-202ENST00000433576 720 ntTSL 5 BASIC5.21□□□□□ -1.58
MSH3P20585 AL161722.2-201ENST00000434731 981 ntBASIC5.21□□□□□ -1.58
MSH3P20585 CLUHP1-201ENST00000435012 1190 ntBASIC5.21□□□□□ -1.58
MSH3P20585 LINC00972-202ENST00000438065 788 ntTSL 3 BASIC5.21□□□□□ -1.58
MSH3P20585 LINC00969-211ENST00000438608 525 ntTSL 5 BASIC5.21□□□□□ -1.58
MSH3P20585 AL691517.1-201ENST00000440833 1235 ntBASIC5.21□□□□□ -1.58
MSH3P20585 DNAJB5P1-201ENST00000454004 806 ntBASIC5.21□□□□□ -1.58
MSH3P20585 RN7SL172P-201ENST00000460535 303 ntBASIC5.21□□□□□ -1.58
MSH3P20585 RN7SL189P-201ENST00000468631 289 ntBASIC5.21□□□□□ -1.58
MSH3P20585 RPS26P39-201ENST00000469206 341 ntBASIC5.21□□□□□ -1.58
MSH3P20585 COPS8P2-201ENST00000473228 627 ntBASIC5.21□□□□□ -1.58
MSH3P20585 OR9N1P-201ENST00000491296 333 ntBASIC5.21□□□□□ -1.58
MSH3P20585 ENPP7P11-201ENST00000505915 627 ntBASIC5.21□□□□□ -1.58
MSH3P20585 GTF2F2P1-201ENST00000511083 675 ntBASIC5.21□□□□□ -1.58
MSH3P20585 ZCCHC10-209ENST00000513541 794 ntAPPRIS ALT2 TSL 2 BASIC5.21□□□□□ -1.58
MSH3P20585 RFPL4AP3-201ENST00000515267 345 ntBASIC5.21□□□□□ -1.58
MSH3P20585 AP003354.2-201ENST00000517983 563 ntTSL 4 BASIC5.21□□□□□ -1.58
MSH3P20585 NPM1P52-201ENST00000518264 846 ntBASIC5.21□□□□□ -1.58
MSH3P20585 AP003696.1-201ENST00000519337 770 ntTSL 3 BASIC5.21□□□□□ -1.58
MSH3P20585 IGLV2-28-201ENST00000520681 304 ntBASIC5.21□□□□□ -1.58
MSH3P20585 AC015522.1-201ENST00000523678 640 ntTSL 3 BASIC5.21□□□□□ -1.58
MSH3P20585 AC021393.1-201ENST00000531077 433 ntTSL 3 BASIC5.21□□□□□ -1.58
MSH3P20585 AC026401.1-201ENST00000549756 530 ntTSL 3 BASIC5.21□□□□□ -1.58
MSH3P20585 GS1-279B7.1-203ENST00000565520 609 ntTSL 5 BASIC5.21□□□□□ -1.58
MSH3P20585 AC122134.1-202ENST00000569111 1201 ntBASIC5.21□□□□□ -1.58
MSH3P20585 AC127024.5-201ENST00000580085 462 ntBASIC5.21□□□□□ -1.58
MSH3P20585 MIR1269B-201ENST00000580405 75 ntBASIC5.21□□□□□ -1.58
MSH3P20585 AC093330.1-201ENST00000583326 568 ntTSL 4 BASIC5.21□□□□□ -1.58
MSH3P20585 AL162431.4-201ENST00000604674 411 ntBASIC5.21□□□□□ -1.58
MSH3P20585 AL122125.1-201ENST00000616999 600 ntBASIC5.21□□□□□ -1.58
MSH3P20585 FGG-205ENST00000407946 1636 ntTSL 5 BASIC5.21□□□□□ -1.58
MSH3P20585 MTERF1-201ENST00000351870 1997 ntAPPRIS P3 TSL 1 (best) BASIC5.21□□□□□ -1.58
MSH3P20585 XIRP2-203ENST00000409195 12675 ntTSL 5 BASIC5.21□□□□□ -1.58
MSH3P20585 PCDH15-206ENST00000373965 9237 ntAPPRIS ALT2 TSL 5 BASIC5.21□□□□□ -1.58
MSH3P20585 AL161911.1-202ENST00000464488 1534 ntAPPRIS P1 TSL 5 BASIC5.21□□□□□ -1.58
MSH3P20585 CASP1-208ENST00000527979 1521 ntTSL 5 BASIC5.21□□□□□ -1.58
MSH3P20585 LINC02261-201ENST00000512873 2802 ntTSL 2 BASIC5.21□□□□□ -1.58
MSH3P20585 AC023421.1-201ENST00000590535 1785 ntBASIC5.21□□□□□ -1.58
MSH3P20585 TTC3-204ENST00000399017 10363 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
MSH3P20585 OR1E1-201ENST00000322608 1307 ntAPPRIS P1 BASIC5.21□□□□□ -1.58
MSH3P20585 RALGAPA1-204ENST00000553892 6271 ntTSL 5 BASIC5.21□□□□□ -1.58
MSH3P20585 OR5AU1-203ENST00000641697 7755 ntAPPRIS P1 BASIC5.2□□□□□ -1.58
MSH3P20585 POU2F1-202ENST00000367862 14038 ntAPPRIS ALT2 TSL 1 (best) BASIC5.2□□□□□ -1.58
MSH3P20585 AHCTF1-201ENST00000326225 8633 ntAPPRIS P2 TSL 1 (best) BASIC5.2□□□□□ -1.58
MSH3P20585 AKAP9-201ENST00000356239 12471 ntAPPRIS P2 TSL 1 (best) BASIC5.2□□□□□ -1.58
MSH3P20585 LINC01619-207ENST00000551843 2205 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
MSH3P20585 ANK2-202ENST00000357077 14196 ntAPPRIS P3 TSL 1 (best) BASIC5.2□□□□□ -1.58
MSH3P20585 AADAT-202ENST00000353187 2101 ntAPPRIS P3 TSL 2 BASIC5.2□□□□□ -1.58
MSH3P20585 DNAH12-203ENST00000389536 2613 ntTSL 5 BASIC5.2□□□□□ -1.58
MSH3P20585 SEC24D-211ENST00000511481 2626 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
MSH3P20585 TRIM51GP-201ENST00000534741 1350 ntBASIC5.2□□□□□ -1.58
MSH3P20585 KDM3B-209ENST00000542866 3634 ntTSL 2 BASIC5.2□□□□□ -1.58
MSH3P20585 ZNF568-214ENST00000616085 3542 ntTSL 5 BASIC5.2□□□□□ -1.58
MSH3P20585 SLC38A9-218ENST00000512595 1756 ntTSL 2 BASIC5.2□□□□□ -1.58
MSH3P20585 ZEB1-202ENST00000361642 5990 ntAPPRIS ALT2 TSL 1 (best) BASIC5.2□□□□□ -1.58
MSH3P20585 INTU-201ENST00000335251 13233 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
MSH3P20585 ZNF845-201ENST00000458035 4311 ntAPPRIS P1 TSL 4 BASIC5.2□□□□□ -1.58
MSH3P20585 TAS2R8-201ENST00000240615 1243 ntAPPRIS P1 BASIC5.2□□□□□ -1.58
MSH3P20585 IREB2-201ENST00000258886 6354 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
MSH3P20585 OR1L8-201ENST00000304865 1061 ntAPPRIS P1 BASIC5.2□□□□□ -1.58
MSH3P20585 FNIP1-202ENST00000307968 6388 ntAPPRIS ALT2 TSL 5 BASIC5.2□□□□□ -1.58
MSH3P20585 RNU1-43P-201ENST00000365052 165 ntBASIC5.2□□□□□ -1.58
MSH3P20585 CDKN3-203ENST00000395577 637 ntTSL 5 BASIC5.2□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 75.8 ms