Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 RNU2-72P-201ENST00000411175 163 ntBASIC6.51□□□□□ -1.37
COL3A1P02461 AL807761.1-201ENST00000417622 171 ntBASIC6.51□□□□□ -1.37
COL3A1P02461 OR51A6P-201ENST00000418680 1004 ntBASIC6.51□□□□□ -1.37
COL3A1P02461 AC007557.4-201ENST00000421907 430 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
COL3A1P02461 LINC00502-201ENST00000423621 445 ntTSL 3 BASIC6.51□□□□□ -1.37
COL3A1P02461 FABP7P1-201ENST00000424004 391 ntBASIC6.51□□□□□ -1.37
COL3A1P02461 HMGB1P32-201ENST00000425971 565 ntBASIC6.51□□□□□ -1.37
COL3A1P02461 AL137076.1-201ENST00000441046 551 ntTSL 2 BASIC6.51□□□□□ -1.37
COL3A1P02461 MRPL35P2-201ENST00000448009 511 ntBASIC6.51□□□□□ -1.37
COL3A1P02461 C2orf80-207ENST00000453017 722 ntTSL 3 BASIC6.51□□□□□ -1.37
COL3A1P02461 AC089999.1-201ENST00000460336 374 ntBASIC6.51□□□□□ -1.37
COL3A1P02461 RN7SL517P-201ENST00000462240 305 ntBASIC6.51□□□□□ -1.37
COL3A1P02461 AL136537.1-202ENST00000501725 430 ntTSL 3 BASIC6.51□□□□□ -1.37
COL3A1P02461 AC002428.2-201ENST00000522973 414 ntTSL 3 BASIC6.51□□□□□ -1.37
COL3A1P02461 AP001880.2-201ENST00000538233 448 ntBASIC6.51□□□□□ -1.37
COL3A1P02461 AL133368.2-201ENST00000556978 386 ntTSL 3 BASIC6.51□□□□□ -1.37
COL3A1P02461 AL731537.2-201ENST00000561565 951 ntBASIC6.51□□□□□ -1.37
COL3A1P02461 FOPNL-208ENST00000575744 565 ntTSL 4 BASIC6.51□□□□□ -1.37
COL3A1P02461 AC021517.1-203ENST00000590257 421 ntTSL 3 BASIC6.51□□□□□ -1.37
COL3A1P02461 AP001521.2-201ENST00000608772 546 ntBASIC6.51□□□□□ -1.37
COL3A1P02461 Z95327.3-201ENST00000610385 572 ntBASIC6.51□□□□□ -1.37
COL3A1P02461 AC138907.10-201ENST00000623708 983 ntBASIC6.51□□□□□ -1.37
COL3A1P02461 LDHA-225ENST00000625635 141 ntTSL 5 BASIC6.51□□□□□ -1.37
COL3A1P02461 FRG1EP-201ENST00000634469 770 ntBASIC6.51□□□□□ -1.37
COL3A1P02461 CCNE2-202ENST00000396133 1361 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
COL3A1P02461 KNL1-201ENST00000346991 9573 ntAPPRIS P4 TSL 1 (best) BASIC6.51□□□□□ -1.37
COL3A1P02461 HCFC2P1-201ENST00000392864 1592 ntBASIC6.51□□□□□ -1.37
COL3A1P02461 SOCS5P3-201ENST00000425115 1576 ntBASIC6.51□□□□□ -1.37
COL3A1P02461 DTWD2-201ENST00000304058 4365 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
COL3A1P02461 HEMK1-203ENST00000434410 17064 ntAPPRIS P1 TSL 2 BASIC6.51□□□□□ -1.37
COL3A1P02461 ECT2L-205ENST00000541398 4483 ntAPPRIS P1 TSL 5 BASIC6.51□□□□□ -1.37
COL3A1P02461 KCNJ15-201ENST00000328656 8399 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
COL3A1P02461 LINC01422-201ENST00000434868 6043 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
COL3A1P02461 FGF1-202ENST00000359370 3660 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
COL3A1P02461 CLMN-201ENST00000298912 12747 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
COL3A1P02461 STAP1-201ENST00000265404 1511 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
COL3A1P02461 OR7C1-204ENST00000642000 11290 ntAPPRIS P1 BASIC6.5□□□□□ -1.37
COL3A1P02461 CACNB4-245ENST00000637284 2423 ntTSL 5 BASIC6.5□□□□□ -1.37
COL3A1P02461 MDM4-216ENST00000616250 9597 ntTSL 5 BASIC6.5□□□□□ -1.37
COL3A1P02461 PIGN-239ENST00000639902 4439 ntTSL 5 BASIC6.5□□□□□ -1.37
COL3A1P02461 SDAD1P1-202ENST00000524156 2051 ntBASIC6.5□□□□□ -1.37
COL3A1P02461 NLRP3P1-201ENST00000622303 1785 ntBASIC6.5□□□□□ -1.37
COL3A1P02461 LIPF-203ENST00000394375 1470 ntTSL 2 BASIC6.5□□□□□ -1.37
COL3A1P02461 AL590139.1-201ENST00000416267 400 ntBASIC6.5□□□□□ -1.37
COL3A1P02461 BTF3P6-201ENST00000448054 499 ntBASIC6.5□□□□□ -1.37
COL3A1P02461 AL359715.2-201ENST00000452402 682 ntTSL 2 BASIC6.5□□□□□ -1.37
COL3A1P02461 AL035454.1-201ENST00000470758 433 ntTSL 3 BASIC6.5□□□□□ -1.37
COL3A1P02461 LINC02218-202ENST00000504998 582 ntTSL 4 BASIC6.5□□□□□ -1.37
COL3A1P02461 RPL23AP53-201ENST00000521854 457 ntBASIC6.5□□□□□ -1.37
COL3A1P02461 OR5M2P-201ENST00000529003 936 ntBASIC6.5□□□□□ -1.37
COL3A1P02461 LINC02306-201ENST00000546412 529 ntTSL 3 BASIC6.5□□□□□ -1.37
COL3A1P02461 AC109630.1-202ENST00000560552 579 ntTSL 4 BASIC6.5□□□□□ -1.37
COL3A1P02461 TM6SF1-207ENST00000565774 1020 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
COL3A1P02461 AC098850.3-201ENST00000577569 771 ntTSL 3 BASIC6.5□□□□□ -1.37
COL3A1P02461 BNIP3P40-201ENST00000596017 556 ntBASIC6.5□□□□□ -1.37
COL3A1P02461 AL049794.2-201ENST00000616301 365 ntBASIC6.5□□□□□ -1.37
COL3A1P02461 AL031658.2-201ENST00000616850 651 ntBASIC6.5□□□□□ -1.37
COL3A1P02461 AL353684.1-201ENST00000622677 1120 ntBASIC6.5□□□□□ -1.37
COL3A1P02461 AC009039.2-201ENST00000624524 529 ntBASIC6.5□□□□□ -1.37
COL3A1P02461 C3orf67-AS1-202ENST00000482372 2203 ntTSL 2 BASIC6.5□□□□□ -1.37
COL3A1P02461 ST8SIA5-203ENST00000538168 13761 ntTSL 2 BASIC6.5□□□□□ -1.37
COL3A1P02461 GPALPP1-201ENST00000357537 5368 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
COL3A1P02461 CSMD2-206ENST00000373388 13118 ntAPPRIS P3 TSL 1 (best) BASIC6.49□□□□□ -1.37
COL3A1P02461 CNTN1-208ENST00000551295 5557 ntAPPRIS P1 TSL 1 (best) BASIC6.49□□□□□ -1.37
COL3A1P02461 KIAA1109-201ENST00000264501 15896 ntAPPRIS P1 TSL 5 BASIC6.49□□□□□ -1.37
COL3A1P02461 LINC00240-204ENST00000607607 5607 ntTSL 1 (best) BASIC6.49□□□□□ -1.37
COL3A1P02461 HSPA8P14-201ENST00000552265 1805 ntBASIC6.49□□□□□ -1.37
COL3A1P02461 ESRRG-204ENST00000361525 5363 ntAPPRIS P1 TSL 5 BASIC6.49□□□□□ -1.37
COL3A1P02461 MIR133A2-201ENST00000347538 102 ntBASIC6.49□□□□□ -1.37
COL3A1P02461 AL603962.1-201ENST00000413148 436 ntTSL 5 BASIC6.49□□□□□ -1.37
COL3A1P02461 AC114755.2-201ENST00000413520 361 ntBASIC6.49□□□□□ -1.37
COL3A1P02461 LINC01752-201ENST00000417299 438 ntTSL 2 BASIC6.49□□□□□ -1.37
COL3A1P02461 BX510359.2-201ENST00000417920 305 ntBASIC6.49□□□□□ -1.37
COL3A1P02461 USP9YP9-201ENST00000429406 715 ntBASIC6.49□□□□□ -1.37
COL3A1P02461 VDAC1P6-201ENST00000430062 855 ntBASIC6.49□□□□□ -1.37
COL3A1P02461 AL139231.1-201ENST00000431001 312 ntTSL 3 BASIC6.49□□□□□ -1.37
COL3A1P02461 PRPF38AP2-201ENST00000438179 851 ntBASIC6.49□□□□□ -1.37
COL3A1P02461 GSTA7P-201ENST00000438425 448 ntBASIC6.49□□□□□ -1.37
COL3A1P02461 AC004980.3-201ENST00000447046 365 ntBASIC6.49□□□□□ -1.37
COL3A1P02461 HESX1-202ENST00000473921 757 ntTSL 5 BASIC6.49□□□□□ -1.37
COL3A1P02461 AL049874.2-201ENST00000492636 288 ntBASIC6.49□□□□□ -1.37
COL3A1P02461 AC096773.1-201ENST00000506852 648 ntTSL 3 BASIC6.49□□□□□ -1.37
COL3A1P02461 AC096759.1-201ENST00000510744 473 ntTSL 3 BASIC6.49□□□□□ -1.37
COL3A1P02461 AC097460.1-204ENST00000515026 764 ntTSL 5 BASIC6.49□□□□□ -1.37
COL3A1P02461 LINC00535-203ENST00000520096 790 ntTSL 3 BASIC6.49□□□□□ -1.37
COL3A1P02461 AC084033.1-201ENST00000550830 633 ntBASIC6.49□□□□□ -1.37
COL3A1P02461 MIR5699-201ENST00000578903 90 ntBASIC6.49□□□□□ -1.37
COL3A1P02461 AC104785.1-201ENST00000603220 588 ntBASIC6.49□□□□□ -1.37
COL3A1P02461 AC097065.2-201ENST00000608159 533 ntBASIC6.49□□□□□ -1.37
COL3A1P02461 AC006963.1-201ENST00000624003 1052 ntBASIC6.49□□□□□ -1.37
COL3A1P02461 CDH7-201ENST00000323011 2728 ntAPPRIS P1 TSL 1 (best) BASIC6.49□□□□□ -1.37
COL3A1P02461 AC018765.1-201ENST00000623357 3446 ntBASIC6.49□□□□□ -1.37
COL3A1P02461 AC073136.1-201ENST00000449426 2884 ntBASIC6.49□□□□□ -1.37
COL3A1P02461 PAPOLA-202ENST00000392990 2588 ntTSL 5 BASIC6.49□□□□□ -1.37
COL3A1P02461 PTBP3-202ENST00000334318 7990 ntAPPRIS ALT1 TSL 1 (best) BASIC6.49□□□□□ -1.37
COL3A1P02461 PCGEM1-201ENST00000454040 1590 ntTSL 1 (best) BASIC6.49□□□□□ -1.37
COL3A1P02461 NCLP2-201ENST00000416078 1462 ntBASIC6.49□□□□□ -1.37
COL3A1P02461 AC239868.2-201ENST00000564237 4527 ntBASIC6.48□□□□□ -1.37
COL3A1P02461 FLRT3-202ENST00000378053 4776 ntAPPRIS P1 TSL 1 (best) BASIC6.48□□□□□ -1.37
COL3A1P02461 VN1R37P-201ENST00000419096 748 ntBASIC6.48□□□□□ -1.37
Retrieved 100 of 98,524 protein–RNA pairs in 89.6 ms