Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 ZNF891-201ENST00000537226 15455 ntAPPRIS P1 TSL 2 BASIC5.26□□□□□ -1.57
PCDHGA1Q9Y5H4 AC006145.1-201ENST00000439234 2651 ntTSL 2 BASIC5.26□□□□□ -1.57
PCDHGA1Q9Y5H4 KCNC4-201ENST00000369787 18750 ntAPPRIS P3 TSL 1 (best) BASIC5.26□□□□□ -1.57
PCDHGA1Q9Y5H4 LINC01277-201ENST00000419957 2398 ntTSL 2 BASIC5.26□□□□□ -1.57
PCDHGA1Q9Y5H4 NXF4-202ENST00000416098 1465 ntBASIC5.26□□□□□ -1.57
PCDHGA1Q9Y5H4 AC012618.3-205ENST00000637896 1496 ntBASIC5.26□□□□□ -1.57
PCDHGA1Q9Y5H4 ZNF81-202ENST00000338637 7859 ntAPPRIS P1 TSL 3 BASIC5.26□□□□□ -1.57
PCDHGA1Q9Y5H4 N4BP2L2-204ENST00000399396 2872 ntTSL 5 BASIC5.26□□□□□ -1.57
PCDHGA1Q9Y5H4 TGIF1-208ENST00000472042 2214 ntTSL 2 BASIC5.25□□□□□ -1.57
PCDHGA1Q9Y5H4 MYB-239ENST00000534121 2238 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
PCDHGA1Q9Y5H4 SMC2-AS1-201ENST00000603487 7020 ntTSL 2 BASIC5.25□□□□□ -1.57
PCDHGA1Q9Y5H4 MTUS1-202ENST00000297488 3731 ntAPPRIS ALT1 TSL 1 (best) BASIC5.25□□□□□ -1.57
PCDHGA1Q9Y5H4 SP110-202ENST00000258382 2080 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
PCDHGA1Q9Y5H4 SLAIN1-204ENST00000358679 2075 ntAPPRIS P3 TSL 2 BASIC5.25□□□□□ -1.57
PCDHGA1Q9Y5H4 RSF1-204ENST00000480887 5318 ntAPPRIS ALT2 TSL 1 (best) BASIC5.25□□□□□ -1.57
PCDHGA1Q9Y5H4 AP005212.5-201ENST00000577614 3505 ntTSL 5 BASIC5.25□□□□□ -1.57
PCDHGA1Q9Y5H4 MBNL1-203ENST00000324196 5225 ntTSL 5 BASIC5.25□□□□□ -1.57
PCDHGA1Q9Y5H4 NADK2-203ENST00000397338 3614 ntTSL 2 BASIC5.25□□□□□ -1.57
PCDHGA1Q9Y5H4 NR2C2-213ENST00000617312 8113 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
PCDHGA1Q9Y5H4 BACH1-201ENST00000286800 5669 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
PCDHGA1Q9Y5H4 MIR133A2-201ENST00000347538 102 ntBASIC5.25□□□□□ -1.57
PCDHGA1Q9Y5H4 RN7SKP17-201ENST00000411242 351 ntBASIC5.25□□□□□ -1.57
PCDHGA1Q9Y5H4 AC211486.3-201ENST00000412694 621 ntBASIC5.25□□□□□ -1.57
PCDHGA1Q9Y5H4 RNGTTP1-201ENST00000420965 728 ntBASIC5.25□□□□□ -1.57
PCDHGA1Q9Y5H4 AL583785.1-201ENST00000428006 512 ntTSL 2 BASIC5.25□□□□□ -1.57
PCDHGA1Q9Y5H4 LINC02476-202ENST00000431071 559 ntTSL 4 BASIC5.25□□□□□ -1.57
PCDHGA1Q9Y5H4 AL354863.1-202ENST00000431695 494 ntTSL 5 BASIC5.25□□□□□ -1.57
PCDHGA1Q9Y5H4 AC017002.1-201ENST00000432268 881 ntTSL 5 BASIC5.25□□□□□ -1.57
PCDHGA1Q9Y5H4 KCNIP1-205ENST00000434108 726 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
PCDHGA1Q9Y5H4 NPM1P18-201ENST00000434232 732 ntBASIC5.25□□□□□ -1.57
PCDHGA1Q9Y5H4 AC093716.1-201ENST00000435923 377 ntBASIC5.25□□□□□ -1.57
PCDHGA1Q9Y5H4 AL161618.1-201ENST00000438738 761 ntTSL 5 BASIC5.25□□□□□ -1.57
PCDHGA1Q9Y5H4 AC091685.1-201ENST00000442436 448 ntTSL 3 BASIC5.25□□□□□ -1.57
PCDHGA1Q9Y5H4 AC007003.1-201ENST00000472463 736 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
PCDHGA1Q9Y5H4 AC090114.3-201ENST00000479267 829 ntBASIC5.25□□□□□ -1.57
PCDHGA1Q9Y5H4 ATP5LP5-201ENST00000483050 299 ntBASIC5.25□□□□□ -1.57
PCDHGA1Q9Y5H4 LYRM4-208ENST00000500576 592 ntTSL 2 BASIC5.25□□□□□ -1.57
PCDHGA1Q9Y5H4 RNU6-491P-201ENST00000516099 110 ntBASIC5.25□□□□□ -1.57
PCDHGA1Q9Y5H4 RN7SKP147-201ENST00000517154 244 ntBASIC5.25□□□□□ -1.57
PCDHGA1Q9Y5H4 AC104997.1-201ENST00000519761 717 ntBASIC5.25□□□□□ -1.57
PCDHGA1Q9Y5H4 AC025437.5-201ENST00000522769 314 ntTSL 3 BASIC5.25□□□□□ -1.57
PCDHGA1Q9Y5H4 AC073569.1-201ENST00000548469 667 ntTSL 2 BASIC5.25□□□□□ -1.57
PCDHGA1Q9Y5H4 AC025423.4-201ENST00000553141 785 ntTSL 3 BASIC5.25□□□□□ -1.57
PCDHGA1Q9Y5H4 DUXA-201ENST00000554048 1006 ntAPPRIS P1 TSL 3 BASIC5.25□□□□□ -1.57
PCDHGA1Q9Y5H4 NMNAT1P5-201ENST00000559657 841 ntBASIC5.25□□□□□ -1.57
PCDHGA1Q9Y5H4 LINS1-207ENST00000560133 1196 ntTSL 2 BASIC5.25□□□□□ -1.57
PCDHGA1Q9Y5H4 AC109460.2-201ENST00000569974 544 ntTSL 3 BASIC5.25□□□□□ -1.57
PCDHGA1Q9Y5H4 AL121989.1-201ENST00000585888 746 ntTSL 3 BASIC5.25□□□□□ -1.57
PCDHGA1Q9Y5H4 AC005021.1-201ENST00000608730 355 ntBASIC5.25□□□□□ -1.57
PCDHGA1Q9Y5H4 PACRG-210ENST00000611387 279 ntTSL 5 BASIC5.25□□□□□ -1.57
PCDHGA1Q9Y5H4 AC091953.3-201ENST00000623220 236 ntBASIC5.25□□□□□ -1.57
PCDHGA1Q9Y5H4 AC099494.2-201ENST00000623371 978 ntBASIC5.25□□□□□ -1.57
PCDHGA1Q9Y5H4 AC093495.1-217ENST00000627385 428 ntTSL 5 BASIC5.25□□□□□ -1.57
PCDHGA1Q9Y5H4 CYP4F35P-202ENST00000636121 390 ntBASIC5.25□□□□□ -1.57
PCDHGA1Q9Y5H4 ZNF615-201ENST00000376716 4048 ntAPPRIS P3 TSL 2 BASIC5.25□□□□□ -1.57
PCDHGA1Q9Y5H4 ING3-201ENST00000315870 3777 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
PCDHGA1Q9Y5H4 GRAMD2B-202ENST00000502348 1363 ntTSL 2 BASIC5.25□□□□□ -1.57
PCDHGA1Q9Y5H4 PSG9-202ENST00000270077 1705 ntAPPRIS P2 TSL 1 (best) BASIC5.25□□□□□ -1.57
PCDHGA1Q9Y5H4 SLC26A7-201ENST00000276609 5263 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
PCDHGA1Q9Y5H4 POSTN-204ENST00000379749 3210 ntTSL 5 BASIC5.25□□□□□ -1.57
PCDHGA1Q9Y5H4 ZNF260-204ENST00000592282 5055 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
PCDHGA1Q9Y5H4 C17orf105-201ENST00000449302 3753 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
PCDHGA1Q9Y5H4 HERC4-205ENST00000412272 4211 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
PCDHGA1Q9Y5H4 NCOA3-203ENST00000372004 7939 ntAPPRIS ALT2 TSL 1 (best) BASIC5.24□□□□□ -1.57
PCDHGA1Q9Y5H4 PRLR-201ENST00000231423 1679 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
PCDHGA1Q9Y5H4 BBIP1-207ENST00000448814 2119 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
PCDHGA1Q9Y5H4 PIAS2-204ENST00000585916 11075 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
PCDHGA1Q9Y5H4 HEPHL1-201ENST00000315765 5345 ntAPPRIS P1 TSL 5 BASIC5.24□□□□□ -1.57
PCDHGA1Q9Y5H4 TTBK2-201ENST00000267890 10905 ntAPPRIS P2 TSL 5 BASIC5.24□□□□□ -1.57
PCDHGA1Q9Y5H4 SCN1A-209ENST00000635750 8299 ntAPPRIS P3 TSL 5 BASIC5.24□□□□□ -1.57
PCDHGA1Q9Y5H4 PCA3-201ENST00000412654 3922 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
PCDHGA1Q9Y5H4 KCNJ10-205ENST00000638728 4351 ntAPPRIS P1 TSL 5 BASIC5.24□□□□□ -1.57
PCDHGA1Q9Y5H4 ETV1-207ENST00000405358 4181 ntTSL 5 BASIC5.24□□□□□ -1.57
PCDHGA1Q9Y5H4 RYR3-209ENST00000634418 15078 ntAPPRIS ALT2 TSL 5 BASIC5.24□□□□□ -1.57
PCDHGA1Q9Y5H4 ZNF559-201ENST00000317221 2732 ntTSL 2 BASIC5.24□□□□□ -1.57
PCDHGA1Q9Y5H4 PARP8-212ENST00000505697 2747 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
PCDHGA1Q9Y5H4 ZNF83-203ENST00000541777 3743 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
PCDHGA1Q9Y5H4 RPL11P3-201ENST00000395256 523 ntBASIC5.24□□□□□ -1.57
PCDHGA1Q9Y5H4 RRM2B-203ENST00000395912 900 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
PCDHGA1Q9Y5H4 RNF212B-201ENST00000399905 1071 ntTSL 5 BASIC5.24□□□□□ -1.57
PCDHGA1Q9Y5H4 PPP3R1-203ENST00000409752 851 ntTSL 3 BASIC5.24□□□□□ -1.57
PCDHGA1Q9Y5H4 AC109779.1-201ENST00000414475 573 ntTSL 5 BASIC5.24□□□□□ -1.57
PCDHGA1Q9Y5H4 AC245028.1-201ENST00000423259 256 ntBASIC5.24□□□□□ -1.57
PCDHGA1Q9Y5H4 NANOGP9-201ENST00000439890 892 ntBASIC5.24□□□□□ -1.57
PCDHGA1Q9Y5H4 AC008080.4-202ENST00000440034 1005 ntTSL 3 BASIC5.24□□□□□ -1.57
PCDHGA1Q9Y5H4 LINC00380-201ENST00000442478 353 ntTSL 2 BASIC5.24□□□□□ -1.57
PCDHGA1Q9Y5H4 CEACAMP9-201ENST00000442990 513 ntBASIC5.24□□□□□ -1.57
PCDHGA1Q9Y5H4 EIF4A2P4-201ENST00000458691 1196 ntBASIC5.24□□□□□ -1.57
PCDHGA1Q9Y5H4 RPS3AP41-201ENST00000462701 778 ntBASIC5.24□□□□□ -1.57
PCDHGA1Q9Y5H4 AC006463.2-201ENST00000473326 348 ntBASIC5.24□□□□□ -1.57
PCDHGA1Q9Y5H4 RPL5P22-201ENST00000480199 884 ntBASIC5.24□□□□□ -1.57
PCDHGA1Q9Y5H4 PTPN20-212ENST00000502254 599 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
PCDHGA1Q9Y5H4 AC004069.1-201ENST00000504082 549 ntTSL 4 BASIC5.24□□□□□ -1.57
PCDHGA1Q9Y5H4 AC091180.4-201ENST00000511322 245 ntTSL 2 BASIC5.24□□□□□ -1.57
PCDHGA1Q9Y5H4 AC012103.1-201ENST00000522281 780 ntTSL 3 BASIC5.24□□□□□ -1.57
PCDHGA1Q9Y5H4 OR5AZ1P-201ENST00000527448 943 ntBASIC5.24□□□□□ -1.57
PCDHGA1Q9Y5H4 MYBPC1-208ENST00000547405 3834 ntAPPRIS ALT2 TSL 1 (best) BASIC5.24□□□□□ -1.57
PCDHGA1Q9Y5H4 AC074029.2-201ENST00000551045 634 ntBASIC5.24□□□□□ -1.57
PCDHGA1Q9Y5H4 EDDM3DP-201ENST00000554692 434 ntBASIC5.24□□□□□ -1.57
PCDHGA1Q9Y5H4 AC087477.3-201ENST00000559214 552 ntTSL 4 BASIC5.24□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 104.6 ms