Protein–RNA interactions for Protein: Q9H9A6

LRRC40, Leucine-rich repeat-containing protein 40, humanhuman

Predictions only

Length 602 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC40Q9H9A6 SHMT1-211ENST00000618902 378 ntTSL 5 BASIC5.2□□□□□ -1.58
LRRC40Q9H9A6 ZNF479-203ENST00000620639 1239 ntTSL 5 BASIC5.2□□□□□ -1.58
LRRC40Q9H9A6 ROS1-201ENST00000368507 7417 ntAPPRIS ALT2 TSL 5 BASIC5.2□□□□□ -1.58
LRRC40Q9H9A6 FZD6-205ENST00000522566 3719 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
LRRC40Q9H9A6 RIF1-203ENST00000428287 7722 ntAPPRIS ALT2 TSL 1 (best) BASIC5.2□□□□□ -1.58
LRRC40Q9H9A6 FGF13-202ENST00000315930 19519 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
LRRC40Q9H9A6 PDCD1LG2-201ENST00000397747 2365 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
LRRC40Q9H9A6 SLC10A7-203ENST00000432059 3747 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
LRRC40Q9H9A6 AC011493.1-201ENST00000596753 1632 ntBASIC5.19□□□□□ -1.58
LRRC40Q9H9A6 SCN2A-201ENST00000283256 8660 ntAPPRIS P5 TSL 1 (best) BASIC5.19□□□□□ -1.58
LRRC40Q9H9A6 LEPROT-206ENST00000613538 4625 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
LRRC40Q9H9A6 SCN11A-202ENST00000444237 5729 ntAPPRIS ALT2 TSL 5 BASIC5.19□□□□□ -1.58
LRRC40Q9H9A6 AC100778.3-201ENST00000580060 1750 ntBASIC5.19□□□□□ -1.58
LRRC40Q9H9A6 ASAH2-204ENST00000447815 2311 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
LRRC40Q9H9A6 FILIP1-202ENST00000370020 4051 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
LRRC40Q9H9A6 RNF182-207ENST00000537663 3382 ntAPPRIS P1 TSL 4 BASIC5.19□□□□□ -1.58
LRRC40Q9H9A6 CLDND1-208ENST00000503004 2818 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
LRRC40Q9H9A6 TMBIM4-201ENST00000286424 989 ntTSL 5 BASIC5.19□□□□□ -1.58
LRRC40Q9H9A6 SNORA2.3-201ENST00000383920 135 ntBASIC5.19□□□□□ -1.58
LRRC40Q9H9A6 MT-RNR1-201ENST00000389680 954 ntBASIC5.19□□□□□ -1.58
LRRC40Q9H9A6 AL512422.1-201ENST00000407033 553 ntBASIC5.19□□□□□ -1.58
LRRC40Q9H9A6 RPL35AP24-201ENST00000413846 330 ntBASIC5.19□□□□□ -1.58
LRRC40Q9H9A6 SLC35E1P1-201ENST00000419313 864 ntBASIC5.19□□□□□ -1.58
LRRC40Q9H9A6 AL139148.1-201ENST00000427122 680 ntBASIC5.19□□□□□ -1.58
LRRC40Q9H9A6 AL389925.1-201ENST00000432257 728 ntBASIC5.19□□□□□ -1.58
LRRC40Q9H9A6 AL591719.2-201ENST00000437400 386 ntTSL 3 BASIC5.19□□□□□ -1.58
LRRC40Q9H9A6 FMR1-IT1-201ENST00000441414 343 ntTSL 5 BASIC5.19□□□□□ -1.58
LRRC40Q9H9A6 LINC00189-203ENST00000447125 783 ntTSL 3 BASIC5.19□□□□□ -1.58
LRRC40Q9H9A6 RPS4XP12-201ENST00000461747 709 ntBASIC5.19□□□□□ -1.58
LRRC40Q9H9A6 RN7SL443P-201ENST00000464331 290 ntBASIC5.19□□□□□ -1.58
LRRC40Q9H9A6 RABGAP1L-214ENST00000478442 648 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
LRRC40Q9H9A6 CREM-238ENST00000488741 651 ntTSL 2 BASIC5.19□□□□□ -1.58
LRRC40Q9H9A6 RN7SL441P-201ENST00000492388 296 ntBASIC5.19□□□□□ -1.58
LRRC40Q9H9A6 AC131953.1-201ENST00000513127 477 ntTSL 2 BASIC5.19□□□□□ -1.58
LRRC40Q9H9A6 AC026719.2-201ENST00000515656 295 ntTSL 3 BASIC5.19□□□□□ -1.58
LRRC40Q9H9A6 RAD21-204ENST00000518055 896 ntTSL 2 BASIC5.19□□□□□ -1.58
LRRC40Q9H9A6 AC105031.1-201ENST00000518550 476 ntBASIC5.19□□□□□ -1.58
LRRC40Q9H9A6 LINC01489-201ENST00000542689 605 ntTSL 5 BASIC5.19□□□□□ -1.58
LRRC40Q9H9A6 AC009562.1-202ENST00000558755 565 ntTSL 4 BASIC5.19□□□□□ -1.58
LRRC40Q9H9A6 NDUFB4P11-201ENST00000560510 395 ntBASIC5.19□□□□□ -1.58
LRRC40Q9H9A6 TAT-AS1-201ENST00000561529 873 ntTSL 5 BASIC5.19□□□□□ -1.58
LRRC40Q9H9A6 CD24P2-201ENST00000565486 219 ntBASIC5.19□□□□□ -1.58
LRRC40Q9H9A6 AC012146.2-201ENST00000576545 416 ntBASIC5.19□□□□□ -1.58
LRRC40Q9H9A6 AC011840.5-201ENST00000582125 771 ntBASIC5.19□□□□□ -1.58
LRRC40Q9H9A6 FAM106CP-201ENST00000582212 507 ntBASIC5.19□□□□□ -1.58
LRRC40Q9H9A6 AC004448.4-204ENST00000585389 743 ntTSL 5 BASIC5.19□□□□□ -1.58
LRRC40Q9H9A6 AC011445.2-201ENST00000599274 173 ntBASIC5.19□□□□□ -1.58
LRRC40Q9H9A6 AC095055.1-201ENST00000603472 1113 ntBASIC5.19□□□□□ -1.58
LRRC40Q9H9A6 IMMP1LP3-201ENST00000604197 224 ntBASIC5.19□□□□□ -1.58
LRRC40Q9H9A6 RPSAP73-201ENST00000614820 330 ntBASIC5.19□□□□□ -1.58
LRRC40Q9H9A6 AC073869.10-201ENST00000642016 354 ntBASIC5.19□□□□□ -1.58
LRRC40Q9H9A6 AC005154.1-228ENST00000454922 1405 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
LRRC40Q9H9A6 DST-202ENST00000312431 17756 ntAPPRIS P2 TSL 5 BASIC5.19□□□□□ -1.58
LRRC40Q9H9A6 ZNF33A-201ENST00000307441 6196 ntAPPRIS ALT2 TSL 4 BASIC5.19□□□□□ -1.58
LRRC40Q9H9A6 LINC00704-201ENST00000430998 1478 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
LRRC40Q9H9A6 MTERF1-202ENST00000406735 1639 ntAPPRIS ALT2 TSL 2 BASIC5.19□□□□□ -1.58
LRRC40Q9H9A6 ZNF562-201ENST00000293648 12380 ntTSL 2 BASIC5.19□□□□□ -1.58
LRRC40Q9H9A6 MYO16-201ENST00000251041 3492 ntTSL 5 BASIC5.18□□□□□ -1.58
LRRC40Q9H9A6 PANDAR-201ENST00000629595 1506 ntBASIC5.18□□□□□ -1.58
LRRC40Q9H9A6 SMG1P4-204ENST00000523028 4131 ntBASIC5.18□□□□□ -1.58
LRRC40Q9H9A6 CKAP5-202ENST00000354558 6428 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
LRRC40Q9H9A6 AP002512.4-201ENST00000641310 4672 ntAPPRIS P1 BASIC5.18□□□□□ -1.58
LRRC40Q9H9A6 VNN3-211ENST00000509351 1700 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
LRRC40Q9H9A6 F13B-201ENST00000367412 2217 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
LRRC40Q9H9A6 BRIP1-202ENST00000577598 3969 ntAPPRIS ALT2 TSL 5 BASIC5.18□□□□□ -1.58
LRRC40Q9H9A6 SNORA17.1-201ENST00000362945 126 ntBASIC5.18□□□□□ -1.58
LRRC40Q9H9A6 U3.2-201ENST00000362981 210 ntBASIC5.18□□□□□ -1.58
LRRC40Q9H9A6 RN7SKP162-201ENST00000363605 345 ntBASIC5.18□□□□□ -1.58
LRRC40Q9H9A6 RNA5SP105-201ENST00000391123 113 ntBASIC5.18□□□□□ -1.58
LRRC40Q9H9A6 RNA5SP296-201ENST00000410523 111 ntBASIC5.18□□□□□ -1.58
LRRC40Q9H9A6 CTSL3P-202ENST00000412179 788 ntBASIC5.18□□□□□ -1.58
LRRC40Q9H9A6 AF127577.2-201ENST00000436429 824 ntTSL 3 BASIC5.18□□□□□ -1.58
LRRC40Q9H9A6 AL161629.1-201ENST00000446201 457 ntTSL 3 BASIC5.18□□□□□ -1.58
LRRC40Q9H9A6 AL356421.2-201ENST00000446733 197 ntTSL 3 BASIC5.18□□□□□ -1.58
LRRC40Q9H9A6 MRPL35P2-201ENST00000448009 511 ntBASIC5.18□□□□□ -1.58
LRRC40Q9H9A6 SETSIP-201ENST00000485873 879 ntAPPRIS ALT2 BASIC5.18□□□□□ -1.58
LRRC40Q9H9A6 RPS21P4-201ENST00000487122 248 ntBASIC5.18□□□□□ -1.58
LRRC40Q9H9A6 RN7SL101P-201ENST00000496350 279 ntBASIC5.18□□□□□ -1.58
LRRC40Q9H9A6 AC112206.2-204ENST00000504068 793 ntTSL 3 BASIC5.18□□□□□ -1.58
LRRC40Q9H9A6 AC011411.1-201ENST00000509592 876 ntBASIC5.18□□□□□ -1.58
LRRC40Q9H9A6 AC025437.5-201ENST00000522769 314 ntTSL 3 BASIC5.18□□□□□ -1.58
LRRC40Q9H9A6 GTF2H1-208ENST00000526630 932 ntTSL 2 BASIC5.18□□□□□ -1.58
LRRC40Q9H9A6 AL390334.1-201ENST00000556395 450 ntBASIC5.18□□□□□ -1.58
LRRC40Q9H9A6 AP005131.3-201ENST00000590042 665 ntTSL 3 BASIC5.18□□□□□ -1.58
LRRC40Q9H9A6 AC073254.1-207ENST00000600482 714 ntTSL 5 BASIC5.18□□□□□ -1.58
LRRC40Q9H9A6 OR7M1P-201ENST00000608946 533 ntBASIC5.18□□□□□ -1.58
LRRC40Q9H9A6 CASC17-201ENST00000569074 2059 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
LRRC40Q9H9A6 FILIP1-201ENST00000237172 4580 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
LRRC40Q9H9A6 RAD51AP1-202ENST00000352618 2113 ntAPPRIS P3 TSL 1 (best) BASIC5.18□□□□□ -1.58
LRRC40Q9H9A6 SERPINA9-204ENST00000424550 1462 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
LRRC40Q9H9A6 UQCRC2P1-201ENST00000417777 1332 ntBASIC5.18□□□□□ -1.58
LRRC40Q9H9A6 TBC1D23-201ENST00000344949 3656 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
LRRC40Q9H9A6 XKR4-201ENST00000327381 19880 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
LRRC40Q9H9A6 NLRC4-203ENST00000402280 3355 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
LRRC40Q9H9A6 INPP4B-201ENST00000262992 3741 ntAPPRIS P1 TSL 5 BASIC5.18□□□□□ -1.58
LRRC40Q9H9A6 LINC01933-204ENST00000524295 3591 ntTSL 2 BASIC5.17□□□□□ -1.58
LRRC40Q9H9A6 PIK3C3-217ENST00000639914 2722 ntTSL 5 BASIC5.17□□□□□ -1.58
LRRC40Q9H9A6 UGP2-229ENST00000613823 1858 ntAPPRIS ALT1 TSL 5 BASIC5.17□□□□□ -1.58
LRRC40Q9H9A6 GHR-210ENST00000615111 4814 ntAPPRIS P1 TSL 5 BASIC5.17□□□□□ -1.58
LRRC40Q9H9A6 GTDC1-203ENST00000392867 2408 ntTSL 5 BASIC5.17□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 82 ms