Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 SESN1-201ENST00000302071 2718 ntTSL 1 (best) BASIC7.08□□□□□ -1.28
CHMP4AQ9BY43 OR51G2-202ENST00000641926 3326 ntAPPRIS P1 BASIC7.08□□□□□ -1.28
CHMP4AQ9BY43 LRRC37A3-204ENST00000400877 3273 ntTSL 2 BASIC7.08□□□□□ -1.28
CHMP4AQ9BY43 ADGRF5-201ENST00000265417 5668 ntAPPRIS P1 TSL 1 (best) BASIC7.08□□□□□ -1.28
CHMP4AQ9BY43 AC007938.2-201ENST00000604666 2634 ntBASIC7.08□□□□□ -1.28
CHMP4AQ9BY43 EXTL2-201ENST00000370113 2835 ntAPPRIS P1 TSL 1 (best) BASIC7.08□□□□□ -1.28
CHMP4AQ9BY43 MAK-204ENST00000536370 3767 ntTSL 1 (best) BASIC7.08□□□□□ -1.28
CHMP4AQ9BY43 DSPP-202ENST00000399271 4331 ntAPPRIS P1 TSL 5 BASIC7.08□□□□□ -1.28
CHMP4AQ9BY43 TCP11X1-202ENST00000622971 1372 ntBASIC7.08□□□□□ -1.28
CHMP4AQ9BY43 MYBPC1-221ENST00000551300 3934 ntAPPRIS ALT2 TSL 1 (best) BASIC7.08□□□□□ -1.28
CHMP4AQ9BY43 MTUS1-202ENST00000297488 3731 ntAPPRIS ALT1 TSL 1 (best) BASIC7.07□□□□□ -1.28
CHMP4AQ9BY43 ANK3-201ENST00000280772 16874 ntAPPRIS P3 TSL 1 (best) BASIC7.07□□□□□ -1.28
CHMP4AQ9BY43 RAD51AP1-202ENST00000352618 2113 ntAPPRIS P3 TSL 1 (best) BASIC7.07□□□□□ -1.28
CHMP4AQ9BY43 MEPE-202ENST00000395102 2123 ntAPPRIS ALT2 TSL 5 BASIC7.07□□□□□ -1.28
CHMP4AQ9BY43 VCAN-201ENST00000265077 12625 ntAPPRIS P3 TSL 1 (best) BASIC7.07□□□□□ -1.28
CHMP4AQ9BY43 AC083899.1-201ENST00000454465 3819 ntBASIC7.07□□□□□ -1.28
CHMP4AQ9BY43 C1orf27-201ENST00000287859 3792 ntAPPRIS P1 TSL 1 (best) BASIC7.07□□□□□ -1.28
CHMP4AQ9BY43 Z95327.2-201ENST00000414579 1873 ntBASIC7.07□□□□□ -1.28
CHMP4AQ9BY43 ZFAND6-223ENST00000616533 1653 ntAPPRIS P1 TSL 5 BASIC7.07□□□□□ -1.28
CHMP4AQ9BY43 AC103740.1-201ENST00000558888 7427 ntTSL 2 BASIC7.07□□□□□ -1.28
CHMP4AQ9BY43 CR788268.1-201ENST00000603931 1809 ntBASIC7.07□□□□□ -1.28
CHMP4AQ9BY43 IL20-201ENST00000367096 925 ntAPPRIS P1 TSL 1 (best) BASIC7.07□□□□□ -1.28
CHMP4AQ9BY43 RN7SKP229-201ENST00000410465 302 ntBASIC7.07□□□□□ -1.28
CHMP4AQ9BY43 PSMA3-202ENST00000412908 908 ntTSL 1 (best) BASIC7.07□□□□□ -1.28
CHMP4AQ9BY43 LINC02518-201ENST00000421737 524 ntTSL 3 BASIC7.07□□□□□ -1.28
CHMP4AQ9BY43 AC021876.1-201ENST00000425959 359 ntBASIC7.07□□□□□ -1.28
CHMP4AQ9BY43 TXNDC12-AS1-201ENST00000428794 391 ntTSL 3 BASIC7.07□□□□□ -1.28
CHMP4AQ9BY43 AC005008.2-201ENST00000431501 715 ntTSL 3 BASIC7.07□□□□□ -1.28
CHMP4AQ9BY43 LINC01878-201ENST00000434559 769 ntTSL 3 BASIC7.07□□□□□ -1.28
CHMP4AQ9BY43 AC068058.1-201ENST00000435782 389 ntTSL 5 BASIC7.07□□□□□ -1.28
CHMP4AQ9BY43 RPL34P26-201ENST00000445636 354 ntBASIC7.07□□□□□ -1.28
CHMP4AQ9BY43 LINC01422-203ENST00000447149 509 ntTSL 4 BASIC7.07□□□□□ -1.28
CHMP4AQ9BY43 AC005229.2-201ENST00000456995 399 ntBASIC7.07□□□□□ -1.28
CHMP4AQ9BY43 COX7A2-205ENST00000460985 357 ntTSL 2 BASIC7.07□□□□□ -1.28
CHMP4AQ9BY43 APOOP2-201ENST00000461561 539 ntBASIC7.07□□□□□ -1.28
CHMP4AQ9BY43 AC026348.1-201ENST00000462549 1053 ntBASIC7.07□□□□□ -1.28
CHMP4AQ9BY43 MTND6P2-201ENST00000512226 524 ntBASIC7.07□□□□□ -1.28
CHMP4AQ9BY43 LINC02117-201ENST00000513673 540 ntTSL 4 BASIC7.07□□□□□ -1.28
CHMP4AQ9BY43 AC111149.1-201ENST00000522560 343 ntTSL 3 BASIC7.07□□□□□ -1.28
CHMP4AQ9BY43 NSMCE2-210ENST00000522563 1037 ntAPPRIS P1 TSL 5 BASIC7.07□□□□□ -1.28
CHMP4AQ9BY43 AP002340.1-201ENST00000529298 285 ntTSL 3 BASIC7.07□□□□□ -1.28
CHMP4AQ9BY43 AL049629.1-201ENST00000534431 648 ntTSL 3 BASIC7.07□□□□□ -1.28
CHMP4AQ9BY43 SNHG1-218ENST00000541615 748 ntTSL 5 BASIC7.07□□□□□ -1.28
CHMP4AQ9BY43 AC090022.1-201ENST00000546569 311 ntBASIC7.07□□□□□ -1.28
CHMP4AQ9BY43 LINC02416-201ENST00000550019 540 ntTSL 4 BASIC7.07□□□□□ -1.28
CHMP4AQ9BY43 AL049779.2-201ENST00000553847 315 ntBASIC7.07□□□□□ -1.28
CHMP4AQ9BY43 AP001381.1-201ENST00000584109 534 ntTSL 5 BASIC7.07□□□□□ -1.28
CHMP4AQ9BY43 AC067968.2-201ENST00000592583 566 ntTSL 4 BASIC7.07□□□□□ -1.28
CHMP4AQ9BY43 GMFG-212ENST00000602185 423 ntTSL 3 BASIC7.07□□□□□ -1.28
CHMP4AQ9BY43 MTCO3P22-201ENST00000603219 784 ntBASIC7.07□□□□□ -1.28
CHMP4AQ9BY43 AP000864.1-201ENST00000609424 650 ntBASIC7.07□□□□□ -1.28
CHMP4AQ9BY43 MIR7973-1-201ENST00000614683 76 ntBASIC7.07□□□□□ -1.28
CHMP4AQ9BY43 AC015712.7-201ENST00000615211 635 ntBASIC7.07□□□□□ -1.28
CHMP4AQ9BY43 AC009318.3-201ENST00000616916 503 ntBASIC7.07□□□□□ -1.28
CHMP4AQ9BY43 CU638689.1-201ENST00000623225 897 ntTSL 3 BASIC7.07□□□□□ -1.28
CHMP4AQ9BY43 CU634019.4-201ENST00000623347 897 ntTSL 3 BASIC7.07□□□□□ -1.28
CHMP4AQ9BY43 MIR325HG-202ENST00000626832 598 ntTSL 4 BASIC7.07□□□□□ -1.28
CHMP4AQ9BY43 LINC00254-202ENST00000633813 439 ntTSL 3 BASIC7.07□□□□□ -1.28
CHMP4AQ9BY43 LINC01708-202ENST00000634316 859 ntTSL 5 BASIC7.07□□□□□ -1.28
CHMP4AQ9BY43 AL355488.2-201ENST00000609909 2850 ntBASIC7.07□□□□□ -1.28
CHMP4AQ9BY43 LRRC8B-201ENST00000330947 7593 ntAPPRIS P1 TSL 5 BASIC7.07□□□□□ -1.28
CHMP4AQ9BY43 BCLAF1-201ENST00000353331 7110 ntTSL 5 BASIC7.06□□□□□ -1.28
CHMP4AQ9BY43 GVINP1-202ENST00000531871 7271 ntBASIC7.06□□□□□ -1.28
CHMP4AQ9BY43 PTK2-206ENST00000517712 3351 ntTSL 2 BASIC7.06□□□□□ -1.28
CHMP4AQ9BY43 AC138409.2-201ENST00000514048 5001 ntTSL 5 BASIC7.06□□□□□ -1.28
CHMP4AQ9BY43 ZNF560-201ENST00000301480 2654 ntAPPRIS P1 TSL 1 (best) BASIC7.06□□□□□ -1.28
CHMP4AQ9BY43 ENPP3-201ENST00000357639 3162 ntAPPRIS P1 TSL 1 (best) BASIC7.06□□□□□ -1.28
CHMP4AQ9BY43 MAPK10-349ENST00000641767 3661 ntBASIC7.06□□□□□ -1.28
CHMP4AQ9BY43 MCM9-209ENST00000619706 4822 ntAPPRIS P1 TSL 5 BASIC7.06□□□□□ -1.28
CHMP4AQ9BY43 NAV2-AS5-201ENST00000528726 3307 ntTSL 1 (best) BASIC7.06□□□□□ -1.28
CHMP4AQ9BY43 LINC01020-202ENST00000508201 1800 ntTSL 1 (best) BASIC7.06□□□□□ -1.28
CHMP4AQ9BY43 BBIP1-207ENST00000448814 2119 ntTSL 1 (best) BASIC7.06□□□□□ -1.28
CHMP4AQ9BY43 AL359715.3-201ENST00000569267 2123 ntBASIC7.06□□□□□ -1.28
CHMP4AQ9BY43 MBNL2-204ENST00000397601 4487 ntTSL 5 BASIC7.06□□□□□ -1.28
CHMP4AQ9BY43 RNASE2-201ENST00000304625 755 ntAPPRIS P1 TSL 1 (best) BASIC7.06□□□□□ -1.28
CHMP4AQ9BY43 MIR92A2-201ENST00000385299 75 ntBASIC7.06□□□□□ -1.28
CHMP4AQ9BY43 MIR1286-201ENST00000408112 78 ntBASIC7.06□□□□□ -1.28
CHMP4AQ9BY43 AC008060.2-201ENST00000415333 468 ntTSL 3 BASIC7.06□□□□□ -1.28
CHMP4AQ9BY43 OR13Z1P-201ENST00000416141 834 ntBASIC7.06□□□□□ -1.28
CHMP4AQ9BY43 MTND4LP14-201ENST00000429447 288 ntBASIC7.06□□□□□ -1.28
CHMP4AQ9BY43 AC017002.1-201ENST00000432268 881 ntTSL 5 BASIC7.06□□□□□ -1.28
CHMP4AQ9BY43 HMGB3P9-201ENST00000441799 583 ntBASIC7.06□□□□□ -1.28
CHMP4AQ9BY43 AL590764.1-201ENST00000450860 726 ntTSL 3 BASIC7.06□□□□□ -1.28
CHMP4AQ9BY43 AZGP1P2-201ENST00000454506 345 ntBASIC7.06□□□□□ -1.28
CHMP4AQ9BY43 AC034195.1-203ENST00000455703 728 ntTSL 2 BASIC7.06□□□□□ -1.28
CHMP4AQ9BY43 FO393415.3-201ENST00000456424 375 ntTSL 3 BASIC7.06□□□□□ -1.28
CHMP4AQ9BY43 AP006216.2-201ENST00000457746 333 ntTSL 5 BASIC7.06□□□□□ -1.28
CHMP4AQ9BY43 EIF4E-204ENST00000504432 1132 ntTSL 5 BASIC7.06□□□□□ -1.28
CHMP4AQ9BY43 AC097103.2-204ENST00000510068 569 ntTSL 3 BASIC7.06□□□□□ -1.28
CHMP4AQ9BY43 AC098829.1-202ENST00000513384 537 ntTSL 3 BASIC7.06□□□□□ -1.28
CHMP4AQ9BY43 AC010261.2-201ENST00000515563 588 ntTSL 2 BASIC7.06□□□□□ -1.28
CHMP4AQ9BY43 SCARNA21.2-201ENST00000516600 166 ntBASIC7.06□□□□□ -1.28
CHMP4AQ9BY43 LINC00535-202ENST00000517785 264 ntTSL 3 BASIC7.06□□□□□ -1.28
CHMP4AQ9BY43 PDCD5P1-201ENST00000543528 309 ntBASIC7.06□□□□□ -1.28
CHMP4AQ9BY43 LINC02443-204ENST00000544717 754 ntTSL 5 BASIC7.06□□□□□ -1.28
CHMP4AQ9BY43 TMEM191C-213ENST00000545656 574 ntAPPRIS ALT2 BASIC7.06□□□□□ -1.28
CHMP4AQ9BY43 AC079328.3-201ENST00000558905 691 ntTSL 3 BASIC7.06□□□□□ -1.28
CHMP4AQ9BY43 MIR4716-201ENST00000579628 84 ntBASIC7.06□□□□□ -1.28
CHMP4AQ9BY43 SATB1-AS1-222ENST00000600177 751 ntTSL 5 BASIC7.06□□□□□ -1.28
CHMP4AQ9BY43 AC024563.1-201ENST00000601860 618 ntTSL 2 BASIC7.06□□□□□ -1.28
Retrieved 100 of 98,524 protein–RNA pairs in 89.9 ms