Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 AP1G1-207ENST00000564155 2723 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
PRKDCP78527 FAM91A3P-201ENST00000456826 2544 ntBASIC3.4□□□□□ -1.87
PRKDCP78527 C10orf120-201ENST00000329446 1064 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.87
PRKDCP78527 MIR7-3-201ENST00000384898 110 ntBASIC3.4□□□□□ -1.87
PRKDCP78527 AC097717.1-250ENST00000608498 273 ntTSL 5 BASIC3.4□□□□□ -1.87
PRKDCP78527 AC034238.1-215ENST00000609792 219 ntTSL 5 BASIC3.4□□□□□ -1.87
PRKDCP78527 AC092683.2-203ENST00000618807 788 ntTSL 5 BASIC3.4□□□□□ -1.87
PRKDCP78527 AC140479.6-201ENST00000633535 357 ntBASIC3.4□□□□□ -1.87
PRKDCP78527 AC090826.1-202ENST00000562009 3337 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
PRKDCP78527 GALK2-201ENST00000327171 5299 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
PRKDCP78527 CIITA-201ENST00000324288 11952 ntAPPRIS P3 TSL 1 (best) BASIC3.4□□□□□ -1.87
PRKDCP78527 FAM205A-201ENST00000378788 4225 ntAPPRIS P1 TSL 2 BASIC3.4□□□□□ -1.87
PRKDCP78527 ZNF365-204ENST00000395251 2695 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
PRKDCP78527 MAK-203ENST00000474039 3859 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.87
PRKDCP78527 ZMYM2-210ENST00000610343 10200 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.87
PRKDCP78527 NCOR1-205ENST00000395857 9501 ntTSL 5 BASIC3.39□□□□□ -1.87
PRKDCP78527 CNTN1-202ENST00000348761 3328 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
PRKDCP78527 ZNF100-202ENST00000358296 5745 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
PRKDCP78527 HLTF-203ENST00000465259 5306 ntAPPRIS ALT1 TSL 1 (best) BASIC3.39□□□□□ -1.87
PRKDCP78527 ZNF37A-201ENST00000351773 7027 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
PRKDCP78527 DEFB119-203ENST00000376321 457 ntAPPRIS P3 TSL 1 (best) BASIC3.39□□□□□ -1.87
PRKDCP78527 AL031674.1-202ENST00000413070 465 ntTSL 3 BASIC3.39□□□□□ -1.87
PRKDCP78527 AL929472.2-201ENST00000419993 481 ntTSL 5 BASIC3.39□□□□□ -1.87
PRKDCP78527 AL050321.1-201ENST00000432363 400 ntBASIC3.39□□□□□ -1.87
PRKDCP78527 AL121872.1-202ENST00000435867 308 ntTSL 5 BASIC3.39□□□□□ -1.87
PRKDCP78527 AL132838.2-201ENST00000492041 314 ntBASIC3.39□□□□□ -1.87
PRKDCP78527 HMGN1P9-201ENST00000515212 298 ntBASIC3.39□□□□□ -1.87
PRKDCP78527 AC010261.2-201ENST00000515563 588 ntTSL 2 BASIC3.39□□□□□ -1.87
PRKDCP78527 TRMT10BP1-201ENST00000519377 943 ntBASIC3.39□□□□□ -1.87
PRKDCP78527 TRDN-205ENST00000546248 1179 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
PRKDCP78527 AL157938.2-205ENST00000586290 891 ntTSL 5 BASIC3.39□□□□□ -1.87
PRKDCP78527 AP001160.4-201ENST00000596971 382 ntBASIC3.39□□□□□ -1.87
PRKDCP78527 AC116312.1-201ENST00000606841 314 ntBASIC3.39□□□□□ -1.87
PRKDCP78527 AL354696.2-202ENST00000620300 613 ntTSL 2 BASIC3.39□□□□□ -1.87
PRKDCP78527 SPTY2D1-AS1-205ENST00000635674 450 ntAPPRIS ALT2 TSL 2 BASIC3.39□□□□□ -1.87
PRKDCP78527 BCLAF3-203ENST00000379687 6528 ntAPPRIS P2 TSL 5 BASIC3.39□□□□□ -1.87
PRKDCP78527 ABLIM1-207ENST00000392955 7408 ntTSL 5 BASIC3.39□□□□□ -1.87
PRKDCP78527 MMRN1-204ENST00000508372 3234 ntTSL 2 BASIC3.39□□□□□ -1.87
PRKDCP78527 FMNL3-201ENST00000335154 12634 ntAPPRIS ALT2 TSL 1 (best) BASIC3.39□□□□□ -1.87
PRKDCP78527 RLIMP1-201ENST00000339626 1680 ntBASIC3.39□□□□□ -1.87
PRKDCP78527 MYH4-201ENST00000255381 6016 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
PRKDCP78527 SCAF11-205ENST00000465950 5296 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
PRKDCP78527 RNU1-132P-201ENST00000364300 164 ntBASIC3.39□□□□□ -1.87
PRKDCP78527 SNORA73.2-201ENST00000364946 201 ntBASIC3.39□□□□□ -1.87
PRKDCP78527 RPL11P3-201ENST00000395256 523 ntBASIC3.39□□□□□ -1.87
PRKDCP78527 RNU6ATAC-201ENST00000408749 126 ntBASIC3.39□□□□□ -1.87
PRKDCP78527 AC051618.1-201ENST00000414295 207 ntTSL 3 BASIC3.39□□□□□ -1.87
PRKDCP78527 AP000462.1-201ENST00000535704 818 ntTSL 3 BASIC3.39□□□□□ -1.87
PRKDCP78527 NOVA1-AS1-203ENST00000552101 468 ntTSL 3 BASIC3.39□□□□□ -1.87
PRKDCP78527 RPL21P12-201ENST00000559810 515 ntBASIC3.39□□□□□ -1.87
PRKDCP78527 UBN2-201ENST00000473989 14444 ntAPPRIS P1 TSL 2 BASIC3.39□□□□□ -1.87
PRKDCP78527 AL121722.1-201ENST00000638550 4849 ntAPPRIS P1 TSL 5 BASIC3.39□□□□□ -1.87
PRKDCP78527 LMO3-209ENST00000447609 3365 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
PRKDCP78527 ATR-201ENST00000350721 8249 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
PRKDCP78527 ZNF254-207ENST00000613065 4244 ntTSL 3 BASIC3.39□□□□□ -1.87
PRKDCP78527 OR3A3-203ENST00000641141 3800 ntAPPRIS P1 BASIC3.39□□□□□ -1.87
PRKDCP78527 OGT-201ENST00000373701 3310 ntAPPRIS ALT1 TSL 1 (best) BASIC3.39□□□□□ -1.87
PRKDCP78527 C12orf60-201ENST00000330828 1684 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
PRKDCP78527 AP001029.2-203ENST00000589795 4910 ntBASIC3.39□□□□□ -1.87
PRKDCP78527 HGF-202ENST00000354224 1425 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
PRKDCP78527 BPY2-202ENST00000382585 321 ntAPPRIS P5 TSL 1 (best) BASIC3.39□□□□□ -1.87
PRKDCP78527 RN7SKP267-201ENST00000410381 285 ntBASIC3.39□□□□□ -1.87
PRKDCP78527 RN7SKP17-201ENST00000411242 351 ntBASIC3.39□□□□□ -1.87
PRKDCP78527 RPS17P17-201ENST00000419392 409 ntBASIC3.39□□□□□ -1.87
PRKDCP78527 DUX4L52-201ENST00000549363 777 ntBASIC3.39□□□□□ -1.87
PRKDCP78527 LINC02156-201ENST00000552320 483 ntTSL 2 BASIC3.39□□□□□ -1.87
PRKDCP78527 AC040958.1-201ENST00000561102 201 ntBASIC3.39□□□□□ -1.87
PRKDCP78527 AC092134.1-201ENST00000563690 800 ntTSL 3 BASIC3.39□□□□□ -1.87
PRKDCP78527 BPY2B-204ENST00000615850 321 ntAPPRIS P5 TSL 1 (best) BASIC3.39□□□□□ -1.87
PRKDCP78527 BPY2C-204ENST00000618574 321 ntAPPRIS P5 TSL 1 (best) BASIC3.39□□□□□ -1.87
PRKDCP78527 POGK-201ENST00000367875 6254 ntAPPRIS P1 TSL 5 BASIC3.39□□□□□ -1.87
PRKDCP78527 ITPR1-203ENST00000357086 9762 ntAPPRIS P3 TSL 1 (best) BASIC3.39□□□□□ -1.87
PRKDCP78527 GTF2IRD2P1-202ENST00000618962 3055 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
PRKDCP78527 PLCXD3-202ENST00000377801 7704 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
PRKDCP78527 AP005432.1-201ENST00000580891 3485 ntBASIC3.39□□□□□ -1.87
PRKDCP78527 TACC1-207ENST00000519416 5510 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
PRKDCP78527 TACC1-210ENST00000520615 5509 ntTSL 2 BASIC3.39□□□□□ -1.87
PRKDCP78527 RUNX1T1-248ENST00000613302 7687 ntAPPRIS P3 TSL 5 BASIC3.39□□□□□ -1.87
PRKDCP78527 ERVFRD-3-201ENST00000578561 1617 ntBASIC3.39□□□□□ -1.87
PRKDCP78527 ATOX1-203ENST00000521264 4341 ntTSL 2 BASIC3.39□□□□□ -1.87
PRKDCP78527 LRRC37BP1-201ENST00000398851 714 ntBASIC3.38□□□□□ -1.87
PRKDCP78527 AC092111.3-201ENST00000402465 496 ntAPPRIS P1 TSL 2 BASIC3.38□□□□□ -1.87
PRKDCP78527 RPS7P7-201ENST00000463499 571 ntBASIC3.38□□□□□ -1.87
PRKDCP78527 PLGLA-201ENST00000465668 449 ntBASIC3.38□□□□□ -1.87
PRKDCP78527 LINC02005-201ENST00000498832 782 ntTSL 3 BASIC3.38□□□□□ -1.87
PRKDCP78527 AC107373.1-201ENST00000522570 603 ntTSL 3 BASIC3.38□□□□□ -1.87
PRKDCP78527 CREBZF-209ENST00000534224 545 ntTSL 4 BASIC3.38□□□□□ -1.87
PRKDCP78527 AP002518.2-201ENST00000544925 393 ntTSL 5 BASIC3.38□□□□□ -1.87
PRKDCP78527 AF123462.1-201ENST00000554307 446 ntTSL 3 BASIC3.38□□□□□ -1.87
PRKDCP78527 AC009137.1-201ENST00000562790 260 ntTSL 3 BASIC3.38□□□□□ -1.87
PRKDCP78527 AC074237.1-201ENST00000577674 471 ntTSL 3 BASIC3.38□□□□□ -1.87
PRKDCP78527 AP001357.1-201ENST00000586304 1053 ntBASIC3.38□□□□□ -1.87
PRKDCP78527 KC877982.1-201ENST00000602313 470 ntBASIC3.38□□□□□ -1.87
PRKDCP78527 MALAT1-205ENST00000610851 584 ntTSL 2 BASIC3.38□□□□□ -1.87
PRKDCP78527 ZNF736-202ENST00000423484 7119 ntAPPRIS P1 TSL 2 BASIC3.38□□□□□ -1.87
PRKDCP78527 UNC79-205ENST00000555664 8484 ntAPPRIS ALT2 TSL 5 BASIC3.38□□□□□ -1.87
PRKDCP78527 HMBOX1-202ENST00000355231 1694 ntTSL 5 BASIC3.38□□□□□ -1.87
PRKDCP78527 AC245407.1-201ENST00000621489 2538 ntTSL 2 BASIC3.38□□□□□ -1.87
PRKDCP78527 SPRR2G-201ENST00000368748 568 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
PRKDCP78527 RN7SL132P-201ENST00000478131 296 ntBASIC3.38□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 84 ms