Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 CCDC80-201ENST00000206423 12430 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
COL4A4P53420 SMG1P3-204ENST00000520823 3194 ntTSL 5 BASIC5.28□□□□□ -1.56
COL4A4P53420 BNC2-203ENST00000380672 12844 ntAPPRIS P2 TSL 2 BASIC5.28□□□□□ -1.56
COL4A4P53420 ARPP21-202ENST00000396481 1304 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
COL4A4P53420 AC109446.4-201ENST00000623235 2755 ntBASIC5.28□□□□□ -1.56
COL4A4P53420 LRP2-201ENST00000263816 15808 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
COL4A4P53420 LIMA1-215ENST00000552823 3254 ntAPPRIS ALT2 TSL 2 BASIC5.28□□□□□ -1.56
COL4A4P53420 IL13RA2-201ENST00000243213 1371 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
COL4A4P53420 FOXP2-209ENST00000393498 2617 ntTSL 5 BASIC5.28□□□□□ -1.56
COL4A4P53420 ZNF410-211ENST00000555044 2601 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
COL4A4P53420 PIGN-239ENST00000639902 4439 ntTSL 5 BASIC5.28□□□□□ -1.56
COL4A4P53420 STXBP4-202ENST00000398391 2160 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
COL4A4P53420 ADAM5-202ENST00000399789 1942 ntBASIC5.28□□□□□ -1.56
COL4A4P53420 BLZF1-203ENST00000367808 2749 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
COL4A4P53420 CYBB-201ENST00000378588 4324 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
COL4A4P53420 ASXL2-201ENST00000336112 8889 ntAPPRIS ALT2 TSL 1 (best) BASIC5.28□□□□□ -1.56
COL4A4P53420 NRCAM-202ENST00000379022 3900 ntTSL 5 BASIC5.28□□□□□ -1.56
COL4A4P53420 SLC6A14-202ENST00000598581 4520 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
COL4A4P53420 AC068446.1-201ENST00000556425 1549 ntBASIC5.28□□□□□ -1.56
COL4A4P53420 ERBB4-202ENST00000342788 12136 ntAPPRIS P3 TSL 1 (best) BASIC5.28□□□□□ -1.56
COL4A4P53420 LINC01676-202ENST00000435253 1849 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
COL4A4P53420 RPL21P67-201ENST00000402896 478 ntBASIC5.28□□□□□ -1.56
COL4A4P53420 ITCH-IT1-201ENST00000418598 208 ntTSL 3 BASIC5.28□□□□□ -1.56
COL4A4P53420 LINC00375-201ENST00000433074 601 ntTSL 5 BASIC5.28□□□□□ -1.56
COL4A4P53420 AL359715.2-201ENST00000452402 682 ntTSL 2 BASIC5.28□□□□□ -1.56
COL4A4P53420 AP001781.1-201ENST00000530977 207 ntBASIC5.28□□□□□ -1.56
COL4A4P53420 AL133485.1-201ENST00000555966 392 ntTSL 2 BASIC5.28□□□□□ -1.56
COL4A4P53420 LRRK2-201ENST00000298910 9158 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
COL4A4P53420 UBR5-204ENST00000518205 1931 ntTSL 5 BASIC5.27□□□□□ -1.57
COL4A4P53420 ARID5B-201ENST00000279873 7891 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
COL4A4P53420 AC099654.2-201ENST00000433031 1980 ntBASIC5.27□□□□□ -1.57
COL4A4P53420 NUP93-202ENST00000542526 8257 ntTSL 2 BASIC5.27□□□□□ -1.57
COL4A4P53420 MID2-202ENST00000443968 2251 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
COL4A4P53420 COA1-201ENST00000223336 927 ntAPPRIS P3 TSL 2 BASIC5.27□□□□□ -1.57
COL4A4P53420 LAMTOR3-201ENST00000226522 1220 ntTSL 3 BASIC5.27□□□□□ -1.57
COL4A4P53420 OR8A1-201ENST00000284287 1146 ntAPPRIS P1 BASIC5.27□□□□□ -1.57
COL4A4P53420 SNORD113.2-201ENST00000364166 89 ntBASIC5.27□□□□□ -1.57
COL4A4P53420 SNORA5.1-201ENST00000384275 131 ntBASIC5.27□□□□□ -1.57
COL4A4P53420 OR51B3P-201ENST00000412287 913 ntBASIC5.27□□□□□ -1.57
COL4A4P53420 RPL7P57-201ENST00000423238 740 ntBASIC5.27□□□□□ -1.57
COL4A4P53420 ARHGAP26-IT1-201ENST00000433186 388 ntTSL 3 BASIC5.27□□□□□ -1.57
COL4A4P53420 AL359073.1-201ENST00000448036 403 ntBASIC5.27□□□□□ -1.57
COL4A4P53420 AL161630.1-201ENST00000450938 1299 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
COL4A4P53420 AC034236.1-201ENST00000469891 373 ntBASIC5.27□□□□□ -1.57
COL4A4P53420 OR5M11-201ENST00000528616 1020 ntAPPRIS P1 BASIC5.27□□□□□ -1.57
COL4A4P53420 AC090286.3-201ENST00000573133 187 ntBASIC5.27□□□□□ -1.57
COL4A4P53420 LAMTOR3-202ENST00000499666 4226 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
COL4A4P53420 NRIP1-201ENST00000318948 7556 ntAPPRIS P1 TSL 2 BASIC5.27□□□□□ -1.57
COL4A4P53420 TUSC7-203ENST00000477539 2415 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
COL4A4P53420 AC004158.1-201ENST00000564508 4319 ntBASIC5.27□□□□□ -1.57
COL4A4P53420 SCN1A-204ENST00000423058 8191 ntAPPRIS ALT1 TSL 1 (best) BASIC5.27□□□□□ -1.57
COL4A4P53420 CRISP1-201ENST00000329411 1709 ntTSL 5 BASIC5.27□□□□□ -1.57
COL4A4P53420 FAM72A-201ENST00000341209 1774 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
COL4A4P53420 AC009951.1-201ENST00000623674 2614 ntBASIC5.26□□□□□ -1.57
COL4A4P53420 GRIK2-205ENST00000369138 4921 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
COL4A4P53420 TRPM6-204ENST00000449912 8244 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
COL4A4P53420 AC104118.1-201ENST00000607625 1589 ntBASIC5.26□□□□□ -1.57
COL4A4P53420 ESRRG-224ENST00000616180 5194 ntAPPRIS P1 TSL 5 BASIC5.26□□□□□ -1.57
COL4A4P53420 TNFSF4-202ENST00000367718 3429 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
COL4A4P53420 LINC01524-201ENST00000428009 4390 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
COL4A4P53420 LINC00989-201ENST00000508174 2080 ntTSL 3 BASIC5.26□□□□□ -1.57
COL4A4P53420 AC004817.4-201ENST00000602396 3625 ntBASIC5.26□□□□□ -1.57
COL4A4P53420 MKL2-201ENST00000318282 8608 ntAPPRIS P3 TSL 5 BASIC5.26□□□□□ -1.57
COL4A4P53420 BRWD1-203ENST00000342449 12929 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
COL4A4P53420 CYP2C8-210ENST00000535898 1799 ntTSL 2 BASIC5.26□□□□□ -1.57
COL4A4P53420 RNU1-13P-201ENST00000384499 162 ntBASIC5.26□□□□□ -1.57
COL4A4P53420 RNA5SP345-201ENST00000410646 108 ntBASIC5.26□□□□□ -1.57
COL4A4P53420 RPS21P8-201ENST00000413365 247 ntBASIC5.26□□□□□ -1.57
COL4A4P53420 RPL12P43-201ENST00000420608 499 ntBASIC5.26□□□□□ -1.57
COL4A4P53420 AC098484.1-201ENST00000447572 484 ntTSL 3 BASIC5.26□□□□□ -1.57
COL4A4P53420 RPL21P129-201ENST00000491732 478 ntBASIC5.26□□□□□ -1.57
COL4A4P53420 ENPP7P11-201ENST00000505915 627 ntBASIC5.26□□□□□ -1.57
COL4A4P53420 AC011396.2-202ENST00000511390 375 ntTSL 3 BASIC5.26□□□□□ -1.57
COL4A4P53420 TBCA-207ENST00000520039 157 ntTSL 3 BASIC5.26□□□□□ -1.57
COL4A4P53420 AC132219.1-201ENST00000524337 478 ntTSL 5 BASIC5.26□□□□□ -1.57
COL4A4P53420 FAM174B-202ENST00000553393 495 ntTSL 2 BASIC5.26□□□□□ -1.57
COL4A4P53420 MIR3939-201ENST00000582614 106 ntBASIC5.26□□□□□ -1.57
COL4A4P53420 IGKV1OR2-9-201ENST00000603957 287 ntBASIC5.26□□□□□ -1.57
COL4A4P53420 IGKV1OR2-11-201ENST00000604120 287 ntBASIC5.26□□□□□ -1.57
COL4A4P53420 CTSLP2-203ENST00000628708 493 ntTSL 5 BASIC5.26□□□□□ -1.57
COL4A4P53420 PTPRT-209ENST00000612229 11285 ntTSL 5 BASIC5.26□□□□□ -1.57
COL4A4P53420 DLG2-201ENST00000280241 7730 ntAPPRIS ALT2 TSL 5 BASIC5.26□□□□□ -1.57
COL4A4P53420 RIF1-203ENST00000428287 7722 ntAPPRIS ALT2 TSL 1 (best) BASIC5.26□□□□□ -1.57
COL4A4P53420 NRG1-220ENST00000539990 2401 ntTSL 2 BASIC5.26□□□□□ -1.57
COL4A4P53420 FZD6-205ENST00000522566 3719 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
COL4A4P53420 AL033543.1-201ENST00000623440 13454 ntBASIC5.26□□□□□ -1.57
COL4A4P53420 ENKUR-205ENST00000615958 3294 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
COL4A4P53420 SEMA3A-201ENST00000265362 8225 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
COL4A4P53420 NFAT5-202ENST00000354436 13229 ntAPPRIS P4 TSL 1 (best) BASIC5.26□□□□□ -1.57
COL4A4P53420 AC016687.3-202ENST00000505018 2404 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
COL4A4P53420 OR56B2P-202ENST00000641377 2453 ntBASIC5.25□□□□□ -1.57
COL4A4P53420 PPEF1-201ENST00000349874 2687 ntTSL 5 BASIC5.25□□□□□ -1.57
COL4A4P53420 GABRA3-201ENST00000370314 3712 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
COL4A4P53420 HMMR-204ENST00000432118 2084 ntAPPRIS ALT2 TSL 2 BASIC5.25□□□□□ -1.57
COL4A4P53420 GUCA1C-201ENST00000261047 982 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
COL4A4P53420 AL050305.1-201ENST00000399993 1230 ntBASIC5.25□□□□□ -1.57
COL4A4P53420 AL603962.1-201ENST00000413148 436 ntTSL 5 BASIC5.25□□□□□ -1.57
COL4A4P53420 AC098872.1-201ENST00000413304 543 ntTSL 3 BASIC5.25□□□□□ -1.57
COL4A4P53420 NPM1P36-201ENST00000415681 835 ntBASIC5.25□□□□□ -1.57
COL4A4P53420 AL391704.2-201ENST00000418379 981 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 76.5 ms