Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 RGS4-202ENST00000367908 2606 ntTSL 2 BASIC8.11□□□□□ -1.11
CUX1P39880 RAD17P1-201ENST00000418130 2042 ntBASIC8.11□□□□□ -1.11
CUX1P39880 FBXO3-213ENST00000534136 3217 ntTSL 5 BASIC8.11□□□□□ -1.11
CUX1P39880 GON4L-204ENST00000437809 7713 ntAPPRIS P3 TSL 5 BASIC8.11□□□□□ -1.11
CUX1P39880 RNU6ATAC5P-201ENST00000388104 126 ntBASIC8.11□□□□□ -1.11
CUX1P39880 AC009478.1-201ENST00000429816 562 ntTSL 3 BASIC8.11□□□□□ -1.11
CUX1P39880 AL356309.2-201ENST00000454034 719 ntTSL 5 BASIC8.11□□□□□ -1.11
CUX1P39880 RNU6ATAC28P-201ENST00000459249 118 ntBASIC8.11□□□□□ -1.11
CUX1P39880 AC010618.1-201ENST00000469924 477 ntBASIC8.11□□□□□ -1.11
CUX1P39880 AC126178.1-201ENST00000548722 926 ntTSL 2 BASIC8.11□□□□□ -1.11
CUX1P39880 AC009554.1-201ENST00000559251 399 ntTSL 5 BASIC8.11□□□□□ -1.11
CUX1P39880 BNIP3P5-201ENST00000562290 498 ntBASIC8.11□□□□□ -1.11
CUX1P39880 AC009117.3-202ENST00000563825 557 ntTSL 4 BASIC8.11□□□□□ -1.11
CUX1P39880 AC103876.1-201ENST00000568634 418 ntTSL 3 BASIC8.11□□□□□ -1.11
CUX1P39880 AC010401.3-201ENST00000576600 582 ntTSL 4 BASIC8.11□□□□□ -1.11
CUX1P39880 AC093388.1-201ENST00000609166 430 ntBASIC8.11□□□□□ -1.11
CUX1P39880 GXYLT1P4-203ENST00000616580 641 ntTSL 1 (best) BASIC8.11□□□□□ -1.11
CUX1P39880 SOCS5P3-201ENST00000425115 1576 ntBASIC8.11□□□□□ -1.11
CUX1P39880 PSMA8-205ENST00000612461 1619 ntTSL 5 BASIC8.11□□□□□ -1.11
CUX1P39880 MIR99AHG-219ENST00000619222 3476 ntTSL 2 BASIC8.11□□□□□ -1.11
CUX1P39880 AL731532.1-201ENST00000623972 4236 ntBASIC8.11□□□□□ -1.11
CUX1P39880 ATG12-208ENST00000509910 4333 ntAPPRIS P1 TSL 1 (best) BASIC8.1□□□□□ -1.11
CUX1P39880 STAG2-201ENST00000218089 5218 ntAPPRIS ALT1 TSL 1 (best) BASIC8.1□□□□□ -1.11
CUX1P39880 ZNF585B-205ENST00000532828 6210 ntAPPRIS P1 TSL 1 (best) BASIC8.1□□□□□ -1.11
CUX1P39880 TAS2R3-201ENST00000247879 1101 ntAPPRIS P1 BASIC8.1□□□□□ -1.11
CUX1P39880 CRYZ-203ENST00000370871 1292 ntTSL 1 (best) BASIC8.1□□□□□ -1.11
CUX1P39880 CARD6-202ENST00000381677 1094 ntTSL 1 (best) BASIC8.1□□□□□ -1.11
CUX1P39880 RPL12P9-201ENST00000412942 488 ntBASIC8.1□□□□□ -1.11
CUX1P39880 AC122718.1-201ENST00000439448 744 ntBASIC8.1□□□□□ -1.11
CUX1P39880 AC239367.2-201ENST00000447309 705 ntBASIC8.1□□□□□ -1.11
CUX1P39880 CLEC2A-202ENST00000455827 916 ntAPPRIS P1 TSL 1 (best) BASIC8.1□□□□□ -1.11
CUX1P39880 MTND2P28-201ENST00000457540 1044 ntBASIC8.1□□□□□ -1.11
CUX1P39880 FAM133DP-201ENST00000464802 691 ntBASIC8.1□□□□□ -1.11
CUX1P39880 MTND4LP2-201ENST00000502312 285 ntBASIC8.1□□□□□ -1.11
CUX1P39880 NOX4-211ENST00000528341 1899 ntTSL 2 BASIC8.1□□□□□ -1.11
CUX1P39880 MFAP5-205ENST00000535336 566 ntTSL 4 BASIC8.1□□□□□ -1.11
CUX1P39880 AC244502.1-203ENST00000541008 576 ntTSL 4 BASIC8.1□□□□□ -1.11
CUX1P39880 AC078880.2-201ENST00000547948 843 ntTSL 1 (best) BASIC8.1□□□□□ -1.11
CUX1P39880 AC008056.2-201ENST00000553812 551 ntTSL 5 BASIC8.1□□□□□ -1.11
CUX1P39880 AC106729.1-201ENST00000567777 466 ntTSL 3 BASIC8.1□□□□□ -1.11
CUX1P39880 MIR3939-201ENST00000582614 106 ntBASIC8.1□□□□□ -1.11
CUX1P39880 AC092653.1-201ENST00000608509 531 ntBASIC8.1□□□□□ -1.11
CUX1P39880 ACTR3BP2-202ENST00000623630 1338 ntBASIC8.1□□□□□ -1.11
CUX1P39880 AP000756.2-201ENST00000624168 2567 ntBASIC8.1□□□□□ -1.11
CUX1P39880 AP001605.1-201ENST00000420186 2603 ntTSL 1 (best) BASIC8.1□□□□□ -1.11
CUX1P39880 ZNF492-201ENST00000456783 4245 ntAPPRIS P1 TSL 1 (best) BASIC8.1□□□□□ -1.11
CUX1P39880 ARNTL2-207ENST00000542388 1720 ntAPPRIS ALT2 TSL 1 (best) BASIC8.1□□□□□ -1.11
CUX1P39880 LRP2-201ENST00000263816 15808 ntAPPRIS P1 TSL 1 (best) BASIC8.1□□□□□ -1.11
CUX1P39880 USP9X-201ENST00000324545 12401 ntTSL 5 BASIC8.1□□□□□ -1.11
CUX1P39880 SEC31A-204ENST00000355196 4104 ntAPPRIS P4 TSL 2 BASIC8.1□□□□□ -1.11
CUX1P39880 IBTK-201ENST00000306270 6054 ntAPPRIS P1 TSL 1 (best) BASIC8.1□□□□□ -1.11
CUX1P39880 AL033543.1-201ENST00000623440 13454 ntBASIC8.1□□□□□ -1.11
CUX1P39880 SPEF2-202ENST00000356031 5681 ntAPPRIS P2 TSL 1 (best) BASIC8.1□□□□□ -1.11
CUX1P39880 CDKL3-209ENST00000523054 1775 ntTSL 2 BASIC8.1□□□□□ -1.11
CUX1P39880 GLRA2-202ENST00000355020 1730 ntAPPRIS ALT1 TSL 1 (best) BASIC8.1□□□□□ -1.11
CUX1P39880 LSAMP-207ENST00000539563 8821 ntTSL 3 BASIC8.09□□□□□ -1.11
CUX1P39880 AC009643.2-201ENST00000603543 1448 ntBASIC8.09□□□□□ -1.11
CUX1P39880 SMG1P7-201ENST00000565246 2704 ntBASIC8.09□□□□□ -1.11
CUX1P39880 AC108751.5-201ENST00000492880 1336 ntBASIC8.09□□□□□ -1.11
CUX1P39880 OR1L6-202ENST00000373684 1044 ntBASIC8.09□□□□□ -1.11
CUX1P39880 AC140479.3-201ENST00000418944 1126 ntBASIC8.09□□□□□ -1.11
CUX1P39880 GAS5-208ENST00000425771 242 ntTSL 3 BASIC8.09□□□□□ -1.11
CUX1P39880 LINC00535-203ENST00000520096 790 ntTSL 3 BASIC8.09□□□□□ -1.11
CUX1P39880 AC136777.2-201ENST00000522979 358 ntBASIC8.09□□□□□ -1.11
CUX1P39880 AL035078.3-201ENST00000525382 241 ntTSL 3 BASIC8.09□□□□□ -1.11
CUX1P39880 AC018558.5-201ENST00000565840 952 ntBASIC8.09□□□□□ -1.11
CUX1P39880 LINC02335-201ENST00000616578 659 ntTSL 3 BASIC8.09□□□□□ -1.11
CUX1P39880 RUVBL2-213ENST00000639391 120 ntTSL 5 BASIC8.09□□□□□ -1.11
CUX1P39880 HHLA2-209ENST00000489514 2406 ntAPPRIS P3 TSL 1 (best) BASIC8.09□□□□□ -1.11
CUX1P39880 ZNF569-203ENST00000392150 1918 ntTSL 1 (best) BASIC8.09□□□□□ -1.11
CUX1P39880 APAF1-205ENST00000547045 3744 ntAPPRIS ALT1 TSL 1 (best) BASIC8.09□□□□□ -1.11
CUX1P39880 NR3C2-202ENST00000344721 5712 ntAPPRIS P1 TSL 5 BASIC8.09□□□□□ -1.11
CUX1P39880 LINC01793-201ENST00000409590 2036 ntTSL 2 BASIC8.09□□□□□ -1.12
CUX1P39880 UQCRC2P1-201ENST00000417777 1332 ntBASIC8.09□□□□□ -1.12
CUX1P39880 RN7SKP17-201ENST00000411242 351 ntBASIC8.08□□□□□ -1.12
CUX1P39880 AC118345.1-201ENST00000411785 366 ntTSL 3 BASIC8.08□□□□□ -1.12
CUX1P39880 AC087380.1-202ENST00000415970 1163 ntTSL 2 BASIC8.08□□□□□ -1.12
CUX1P39880 AL161630.1-201ENST00000450938 1299 ntTSL 1 (best) BASIC8.08□□□□□ -1.12
CUX1P39880 PCBP1-AS1-237ENST00000452431 1194 ntTSL 4 BASIC8.08□□□□□ -1.12
CUX1P39880 AC073358.1-201ENST00000505671 684 ntBASIC8.08□□□□□ -1.12
CUX1P39880 LINC02201-203ENST00000514657 674 ntTSL 3 BASIC8.08□□□□□ -1.12
CUX1P39880 AC007424.1-205ENST00000552615 579 ntTSL 4 BASIC8.08□□□□□ -1.12
CUX1P39880 AC034238.1-215ENST00000609792 219 ntTSL 5 BASIC8.08□□□□□ -1.12
CUX1P39880 SMG1P3-204ENST00000520823 3194 ntTSL 5 BASIC8.08□□□□□ -1.12
CUX1P39880 INTS6-220ENST00000497989 3022 ntTSL 2 BASIC8.08□□□□□ -1.12
CUX1P39880 AKAP7-209ENST00000541650 2008 ntTSL 5 BASIC8.08□□□□□ -1.12
CUX1P39880 C5orf34-201ENST00000306862 2507 ntAPPRIS P1 TSL 1 (best) BASIC8.08□□□□□ -1.12
CUX1P39880 SLFN12-201ENST00000304905 2383 ntAPPRIS P1 TSL 1 (best) BASIC8.08□□□□□ -1.12
CUX1P39880 FSHB-202ENST00000417547 1890 ntAPPRIS P1 TSL 5 BASIC8.08□□□□□ -1.12
CUX1P39880 PMCHL2-201ENST00000415808 1841 ntTSL 1 (best) BASIC8.08□□□□□ -1.12
CUX1P39880 MYB-226ENST00000528774 2277 ntAPPRIS ALT1 TSL 1 (best) BASIC8.08□□□□□ -1.12
CUX1P39880 ZFHX3-207ENST00000641206 16414 ntAPPRIS P1 BASIC8.08□□□□□ -1.12
CUX1P39880 SAMMSON-210ENST00000641260 1308 ntBASIC8.08□□□□□ -1.12
CUX1P39880 IQGAP2-204ENST00000502745 3404 ntTSL 2 BASIC8.08□□□□□ -1.12
CUX1P39880 RN7SKP227-201ENST00000364445 330 ntBASIC8.08□□□□□ -1.12
CUX1P39880 RN7SL197P-201ENST00000466981 299 ntBASIC8.08□□□□□ -1.12
CUX1P39880 AC093840.1-201ENST00000511599 336 ntBASIC8.08□□□□□ -1.12
CUX1P39880 RNU1-6P-201ENST00000516290 144 ntBASIC8.08□□□□□ -1.12
CUX1P39880 MIR3138-201ENST00000585238 82 ntBASIC8.08□□□□□ -1.12
CUX1P39880 ADGRL2-222ENST00000627151 5789 ntTSL 5 BASIC8.08□□□□□ -1.12
Retrieved 100 of 98,524 protein–RNA pairs in 73 ms