Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 AC137590.1-201ENST00000542422 495 ntTSL 3 BASIC6.34□□□□□ -1.39
SMARCA1P28370 PPFIA2-AS1-202ENST00000549161 1080 ntTSL 3 BASIC6.34□□□□□ -1.39
SMARCA1P28370 AC084757.2-201ENST00000559165 540 ntTSL 2 BASIC6.34□□□□□ -1.39
SMARCA1P28370 AC036103.1-201ENST00000563846 823 ntTSL 5 BASIC6.34□□□□□ -1.39
SMARCA1P28370 MTATP6P24-201ENST00000576835 677 ntBASIC6.34□□□□□ -1.39
SMARCA1P28370 EIF1P5-201ENST00000585002 234 ntBASIC6.34□□□□□ -1.39
SMARCA1P28370 ZRANB2-AS2-212ENST00000590186 686 ntTSL 5 BASIC6.34□□□□□ -1.39
SMARCA1P28370 AC100775.1-201ENST00000590942 522 ntTSL 3 BASIC6.34□□□□□ -1.39
SMARCA1P28370 ELSPBP1-205ENST00000597519 557 ntTSL 3 BASIC6.34□□□□□ -1.39
SMARCA1P28370 AC008555.3-201ENST00000603717 442 ntTSL 3 BASIC6.34□□□□□ -1.39
SMARCA1P28370 AP004372.1-201ENST00000604842 844 ntBASIC6.34□□□□□ -1.39
SMARCA1P28370 DUXAP10-204ENST00000612052 616 ntBASIC6.34□□□□□ -1.39
SMARCA1P28370 SLC1A3-215ENST00000612708 3832 ntTSL 5 BASIC6.34□□□□□ -1.39
SMARCA1P28370 AC022467.1-201ENST00000614738 749 ntBASIC6.34□□□□□ -1.39
SMARCA1P28370 Metazoa_SRP.170-201ENST00000616060 254 ntBASIC6.34□□□□□ -1.39
SMARCA1P28370 MILR1-204ENST00000616498 747 ntAPPRIS ALT2 TSL 1 (best) BASIC6.34□□□□□ -1.39
SMARCA1P28370 uc_338.7-201ENST00000621834 124 ntBASIC6.34□□□□□ -1.39
SMARCA1P28370 OSER1-AS1-205ENST00000623343 827 ntTSL 5 BASIC6.34□□□□□ -1.39
SMARCA1P28370 AL109659.3-201ENST00000624985 950 ntBASIC6.34□□□□□ -1.39
SMARCA1P28370 PHACTR2P1-202ENST00000636592 773 ntTSL 5 BASIC6.34□□□□□ -1.39
SMARCA1P28370 C11orf65-208ENST00000615746 2711 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.39
SMARCA1P28370 HSPD1P14-201ENST00000432666 1618 ntBASIC6.34□□□□□ -1.39
SMARCA1P28370 AC004076.2-201ENST00000620532 3323 ntBASIC6.34□□□□□ -1.39
SMARCA1P28370 ZNF383-201ENST00000352998 6760 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.39
SMARCA1P28370 RAPH1-207ENST00000423104 1860 ntAPPRIS ALT2 TSL 5 BASIC6.34□□□□□ -1.39
SMARCA1P28370 RAPH1-209ENST00000439222 1854 ntAPPRIS ALT2 TSL 5 BASIC6.34□□□□□ -1.39
SMARCA1P28370 FILIP1L-201ENST00000331335 4219 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.39
SMARCA1P28370 WDYHV1-208ENST00000523984 1491 ntTSL 2 BASIC6.34□□□□□ -1.4
SMARCA1P28370 SPARCL1-202ENST00000418378 2994 ntAPPRIS P1 TSL 5 BASIC6.33□□□□□ -1.4
SMARCA1P28370 ZNF268-205ENST00000536435 13475 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
SMARCA1P28370 ENPP2-207ENST00000522167 1695 ntTSL 2 BASIC6.33□□□□□ -1.4
SMARCA1P28370 HEATR1-203ENST00000366582 8447 ntAPPRIS P1 TSL 5 BASIC6.33□□□□□ -1.4
SMARCA1P28370 AMY1C-201ENST00000370079 1632 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
SMARCA1P28370 AC021237.1-201ENST00000504175 1643 ntTSL 2 BASIC6.33□□□□□ -1.4
SMARCA1P28370 DSC3-201ENST00000360428 6939 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
SMARCA1P28370 VPS50-220ENST00000544910 5736 ntTSL 2 BASIC6.33□□□□□ -1.4
SMARCA1P28370 RNF20-202ENST00000389120 3940 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
SMARCA1P28370 CHST9-203ENST00000618847 11388 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
SMARCA1P28370 ZNF493-203ENST00000392288 5023 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
SMARCA1P28370 SPATA17-201ENST00000366933 5818 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
SMARCA1P28370 TAAR1-201ENST00000275216 1020 ntAPPRIS P1 BASIC6.33□□□□□ -1.4
SMARCA1P28370 RN7SKP185-201ENST00000362813 326 ntBASIC6.33□□□□□ -1.4
SMARCA1P28370 RN7SKP162-201ENST00000363605 345 ntBASIC6.33□□□□□ -1.4
SMARCA1P28370 AL034376.1-201ENST00000380106 484 ntTSL 2 BASIC6.33□□□□□ -1.4
SMARCA1P28370 RPL22P22-201ENST00000395439 379 ntBASIC6.33□□□□□ -1.4
SMARCA1P28370 AC009804.1-201ENST00000400949 179 ntBASIC6.33□□□□□ -1.4
SMARCA1P28370 GSTA12P-201ENST00000402398 508 ntBASIC6.33□□□□□ -1.4
SMARCA1P28370 SRSF1P1-201ENST00000424058 520 ntBASIC6.33□□□□□ -1.4
SMARCA1P28370 VN1R42P-201ENST00000424651 344 ntBASIC6.33□□□□□ -1.4
SMARCA1P28370 AC005008.2-201ENST00000431501 715 ntTSL 3 BASIC6.33□□□□□ -1.4
SMARCA1P28370 BX119904.1-201ENST00000432026 348 ntBASIC6.33□□□□□ -1.4
SMARCA1P28370 OPA1-AS1-201ENST00000433105 492 ntTSL 3 BASIC6.33□□□□□ -1.4
SMARCA1P28370 AC006994.1-201ENST00000438212 839 ntBASIC6.33□□□□□ -1.4
SMARCA1P28370 LINC02038-201ENST00000439074 702 ntTSL 4 BASIC6.33□□□□□ -1.4
SMARCA1P28370 AC093581.1-201ENST00000446411 461 ntTSL 2 BASIC6.33□□□□□ -1.4
SMARCA1P28370 AL035090.1-201ENST00000454835 332 ntBASIC6.33□□□□□ -1.4
SMARCA1P28370 LARP7P4-201ENST00000481075 878 ntBASIC6.33□□□□□ -1.4
SMARCA1P28370 SUMO1P1-201ENST00000497904 306 ntBASIC6.33□□□□□ -1.4
SMARCA1P28370 LINC02465-202ENST00000508724 503 ntTSL 3 BASIC6.33□□□□□ -1.4
SMARCA1P28370 AC104827.1-202ENST00000511917 1049 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
SMARCA1P28370 MTND6P2-201ENST00000512226 524 ntBASIC6.33□□□□□ -1.4
SMARCA1P28370 BX510359.5-201ENST00000515651 304 ntBASIC6.33□□□□□ -1.4
SMARCA1P28370 AC113386.1-201ENST00000523584 381 ntTSL 5 BASIC6.33□□□□□ -1.4
SMARCA1P28370 ARL6IP1P3-201ENST00000524544 560 ntBASIC6.33□□□□□ -1.4
SMARCA1P28370 TEX49-202ENST00000548380 573 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
SMARCA1P28370 LINC02293-202ENST00000548385 358 ntTSL 3 BASIC6.33□□□□□ -1.4
SMARCA1P28370 AC087897.2-201ENST00000552639 678 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
SMARCA1P28370 AC039056.1-201ENST00000552704 467 ntTSL 3 BASIC6.33□□□□□ -1.4
SMARCA1P28370 BLZF2P-201ENST00000553776 1130 ntBASIC6.33□□□□□ -1.4
SMARCA1P28370 AC007225.2-201ENST00000562529 256 ntBASIC6.33□□□□□ -1.4
SMARCA1P28370 AC023825.1-201ENST00000566704 1030 ntBASIC6.33□□□□□ -1.4
SMARCA1P28370 AC090618.1-201ENST00000571972 585 ntTSL 2 BASIC6.33□□□□□ -1.4
SMARCA1P28370 FAM106CP-201ENST00000582212 507 ntBASIC6.33□□□□□ -1.4
SMARCA1P28370 AC011444.3-201ENST00000588342 325 ntTSL 3 BASIC6.33□□□□□ -1.4
SMARCA1P28370 AC008507.2-201ENST00000588402 1176 ntBASIC6.33□□□□□ -1.4
SMARCA1P28370 AC011492.1-201ENST00000600023 315 ntBASIC6.33□□□□□ -1.4
SMARCA1P28370 AC005034.4-201ENST00000603612 899 ntBASIC6.33□□□□□ -1.4
SMARCA1P28370 AC079395.2-201ENST00000610982 737 ntBASIC6.33□□□□□ -1.4
SMARCA1P28370 PXT1-202ENST00000619547 619 ntAPPRIS ALT2 TSL 1 (best) BASIC6.33□□□□□ -1.4
SMARCA1P28370 AC107398.4-201ENST00000635489 765 ntTSL 2 BASIC6.33□□□□□ -1.4
SMARCA1P28370 SAMMSON-209ENST00000641222 1100 ntBASIC6.33□□□□□ -1.4
SMARCA1P28370 AC073869.8-201ENST00000641806 335 ntBASIC6.33□□□□□ -1.4
SMARCA1P28370 PATL1-201ENST00000300146 4072 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
SMARCA1P28370 KCNJ1-204ENST00000392665 4074 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
SMARCA1P28370 ZNF850-202ENST00000591344 7714 ntAPPRIS P3 TSL 1 (best) BASIC6.33□□□□□ -1.4
SMARCA1P28370 DLEU7-AS1-201ENST00000413510 1806 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
SMARCA1P28370 KLRC4-KLRK1-201ENST00000539300 1507 ntAPPRIS P5 TSL 2 BASIC6.33□□□□□ -1.4
SMARCA1P28370 AP005435.3-201ENST00000531260 3198 ntBASIC6.33□□□□□ -1.4
SMARCA1P28370 SLC12A1-201ENST00000330289 1764 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
SMARCA1P28370 TOX3-202ENST00000407228 3124 ntAPPRIS ALT2 TSL 2 BASIC6.33□□□□□ -1.4
SMARCA1P28370 OR6C4-203ENST00000641851 4989 ntAPPRIS P1 BASIC6.33□□□□□ -1.4
SMARCA1P28370 NLRP11-204ENST00000592953 3077 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
SMARCA1P28370 TGIF1-208ENST00000472042 2214 ntTSL 2 BASIC6.33□□□□□ -1.4
SMARCA1P28370 SLC12A6-216ENST00000560164 3744 ntTSL 2 BASIC6.33□□□□□ -1.4
SMARCA1P28370 AL022344.1-201ENST00000439913 3965 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
SMARCA1P28370 MKI67-201ENST00000368653 11417 ntAPPRIS ALT2 TSL 2 BASIC6.32□□□□□ -1.4
SMARCA1P28370 PHACTR4-201ENST00000373836 3107 ntAPPRIS P4 TSL 5 BASIC6.32□□□□□ -1.4
SMARCA1P28370 AL359715.3-201ENST00000569267 2123 ntBASIC6.32□□□□□ -1.4
SMARCA1P28370 AC107021.2-201ENST00000567714 2095 ntBASIC6.32□□□□□ -1.4
SMARCA1P28370 CBX5-201ENST00000209875 11528 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
Retrieved 100 of 98,524 protein–RNA pairs in 72.2 ms