Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 HMGN2P25-201ENST00000486956 268 ntBASIC6.5□□□□□ -1.37
COL8A1P27658 RN7SL388P-201ENST00000498736 339 ntBASIC6.5□□□□□ -1.37
COL8A1P27658 CDH12P2-201ENST00000504393 298 ntBASIC6.5□□□□□ -1.37
COL8A1P27658 AC068134.3-201ENST00000513620 788 ntBASIC6.5□□□□□ -1.37
COL8A1P27658 AC130462.1-201ENST00000548144 549 ntTSL 5 BASIC6.5□□□□□ -1.37
COL8A1P27658 SCOCP1-201ENST00000554676 349 ntBASIC6.5□□□□□ -1.37
COL8A1P27658 AL137100.2-201ENST00000555786 315 ntBASIC6.5□□□□□ -1.37
COL8A1P27658 GTF2IP8-201ENST00000560687 584 ntBASIC6.5□□□□□ -1.37
COL8A1P27658 AL513324.1-201ENST00000575236 632 ntTSL 5 BASIC6.5□□□□□ -1.37
COL8A1P27658 RN7SL835P-201ENST00000579920 262 ntBASIC6.5□□□□□ -1.37
COL8A1P27658 AC090506.1-201ENST00000583089 572 ntTSL 4 BASIC6.5□□□□□ -1.37
COL8A1P27658 MIR212-201ENST00000586026 110 ntBASIC6.5□□□□□ -1.37
COL8A1P27658 AP001330.4-201ENST00000604350 154 ntBASIC6.5□□□□□ -1.37
COL8A1P27658 AC015982.1-201ENST00000608113 465 ntBASIC6.5□□□□□ -1.37
COL8A1P27658 AC104010.1-201ENST00000616889 150 ntBASIC6.5□□□□□ -1.37
COL8A1P27658 WFDC11-203ENST00000618797 561 ntAPPRIS P1 TSL 5 BASIC6.5□□□□□ -1.37
COL8A1P27658 OR1N1-202ENST00000619659 939 ntBASIC6.5□□□□□ -1.37
COL8A1P27658 uc_338.22-201ENST00000622722 187 ntBASIC6.5□□□□□ -1.37
COL8A1P27658 OR11H4-203ENST00000641525 1082 ntAPPRIS P1 BASIC6.5□□□□□ -1.37
COL8A1P27658 AL596275.2-203ENST00000641951 371 ntBASIC6.5□□□□□ -1.37
COL8A1P27658 POLH-201ENST00000372226 3322 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
COL8A1P27658 HYDIN-206ENST00000393567 15719 ntAPPRIS ALT2 TSL 5 BASIC6.5□□□□□ -1.37
COL8A1P27658 JAZF1-201ENST00000283928 3125 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
COL8A1P27658 KIAA1524-207ENST00000619684 2839 ntAPPRIS ALT1 TSL 5 BASIC6.5□□□□□ -1.37
COL8A1P27658 UBQLNL-201ENST00000380184 2313 ntAPPRIS P1 BASIC6.5□□□□□ -1.37
COL8A1P27658 LINC00960-202ENST00000492922 2126 ntTSL 2 BASIC6.5□□□□□ -1.37
COL8A1P27658 MAPK10-345ENST00000641724 2980 ntAPPRIS P2 BASIC6.5□□□□□ -1.37
COL8A1P27658 PALLD-206ENST00000505667 3637 ntAPPRIS ALT2 TSL 1 (best) BASIC6.5□□□□□ -1.37
COL8A1P27658 AP000473.2-201ENST00000602659 1537 ntBASIC6.5□□□□□ -1.37
COL8A1P27658 CCL16-205ENST00000611905 1506 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
COL8A1P27658 MEIS1-202ENST00000398506 3530 ntTSL 5 BASIC6.5□□□□□ -1.37
COL8A1P27658 TFDP2-212ENST00000486111 2360 ntAPPRIS P3 TSL 1 (best) BASIC6.5□□□□□ -1.37
COL8A1P27658 OR2A42-202ENST00000641810 4946 ntAPPRIS P1 BASIC6.5□□□□□ -1.37
COL8A1P27658 SMIM31-201ENST00000507311 3123 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
COL8A1P27658 AF121898.1-201ENST00000440763 1860 ntTSL 5 BASIC6.49□□□□□ -1.37
COL8A1P27658 FAM13C-215ENST00000614220 3388 ntAPPRIS ALT2 TSL 5 BASIC6.49□□□□□ -1.37
COL8A1P27658 CABYR-206ENST00000463087 1792 ntAPPRIS P4 TSL 5 BASIC6.49□□□□□ -1.37
COL8A1P27658 ZNF225-201ENST00000262894 4482 ntAPPRIS P1 TSL 1 (best) BASIC6.49□□□□□ -1.37
COL8A1P27658 SPOCK1-201ENST00000282223 4488 ntTSL 5 BASIC6.49□□□□□ -1.37
COL8A1P27658 KCNJ1-203ENST00000392664 1674 ntTSL 1 (best) BASIC6.49□□□□□ -1.37
COL8A1P27658 CCDC150P1-201ENST00000537123 2215 ntBASIC6.49□□□□□ -1.37
COL8A1P27658 AC092828.1-201ENST00000501211 5391 ntTSL 1 (best) BASIC6.49□□□□□ -1.37
COL8A1P27658 ATP5BP1-201ENST00000411980 1574 ntBASIC6.49□□□□□ -1.37
COL8A1P27658 ZNF19-201ENST00000288177 3220 ntAPPRIS P1 TSL 1 (best) BASIC6.49□□□□□ -1.37
COL8A1P27658 MRPS17P1-201ENST00000596009 3130 ntBASIC6.49□□□□□ -1.37
COL8A1P27658 ACSL4-204ENST00000469796 5225 ntAPPRIS P4 TSL 5 BASIC6.49□□□□□ -1.37
COL8A1P27658 RPS17-209ENST00000561157 1909 ntTSL 2 BASIC6.49□□□□□ -1.37
COL8A1P27658 AC020978.8-201ENST00000571975 3022 ntBASIC6.49□□□□□ -1.37
COL8A1P27658 AC116351.1-201ENST00000399869 3482 ntTSL 2 BASIC6.49□□□□□ -1.37
COL8A1P27658 LRRC37A12P-201ENST00000454917 1801 ntBASIC6.49□□□□□ -1.37
COL8A1P27658 CACYBP-209ENST00000613570 2835 ntTSL 2 BASIC6.49□□□□□ -1.37
COL8A1P27658 PRIM2-201ENST00000274891 864 ntTSL 1 (best) BASIC6.49□□□□□ -1.37
COL8A1P27658 CLEC4A-202ENST00000345999 841 ntTSL 5 BASIC6.49□□□□□ -1.37
COL8A1P27658 RNU5D-1-201ENST00000363299 116 ntBASIC6.49□□□□□ -1.37
COL8A1P27658 Y_RNA.176-201ENST00000363815 109 ntBASIC6.49□□□□□ -1.37
COL8A1P27658 RPL32P23-201ENST00000397237 405 ntBASIC6.49□□□□□ -1.37
COL8A1P27658 MTERF4-205ENST00000407095 799 ntTSL 2 BASIC6.49□□□□□ -1.37
COL8A1P27658 RNU2-42P-201ENST00000410697 113 ntBASIC6.49□□□□□ -1.37
COL8A1P27658 MRLN-201ENST00000414264 422 ntAPPRIS P2 TSL 1 (best) BASIC6.49□□□□□ -1.37
COL8A1P27658 MTND4LP17-201ENST00000414607 293 ntBASIC6.49□□□□□ -1.37
COL8A1P27658 RPL34P3-201ENST00000421454 338 ntBASIC6.49□□□□□ -1.37
COL8A1P27658 NFIA-AS2-202ENST00000421455 768 ntTSL 4 BASIC6.49□□□□□ -1.37
COL8A1P27658 AL139184.1-202ENST00000422303 222 ntBASIC6.49□□□□□ -1.37
COL8A1P27658 AL513175.1-201ENST00000431492 780 ntBASIC6.49□□□□□ -1.37
COL8A1P27658 AC012668.2-201ENST00000431727 503 ntTSL 3 BASIC6.49□□□□□ -1.37
COL8A1P27658 AL590502.1-201ENST00000433019 505 ntTSL 2 BASIC6.49□□□□□ -1.37
COL8A1P27658 AC097499.1-201ENST00000444277 208 ntBASIC6.49□□□□□ -1.37
COL8A1P27658 AL161621.1-201ENST00000444796 340 ntTSL 3 BASIC6.49□□□□□ -1.37
COL8A1P27658 YWHAEP1-201ENST00000453697 763 ntBASIC6.49□□□□□ -1.37
COL8A1P27658 MTND1P12-201ENST00000455231 147 ntBASIC6.49□□□□□ -1.37
COL8A1P27658 RNU7-152P-201ENST00000458982 64 ntBASIC6.49□□□□□ -1.37
COL8A1P27658 AP003385.3-201ENST00000472498 287 ntBASIC6.49□□□□□ -1.37
COL8A1P27658 AC083800.1-201ENST00000490594 246 ntAPPRIS P1 TSL 3 BASIC6.49□□□□□ -1.37
COL8A1P27658 DYNLL1P6-201ENST00000503440 264 ntBASIC6.49□□□□□ -1.37
COL8A1P27658 AC025674.1-201ENST00000507074 324 ntBASIC6.49□□□□□ -1.37
COL8A1P27658 SMURF2P1-201ENST00000514992 481 ntBASIC6.49□□□□□ -1.37
COL8A1P27658 STX18-IT1-201ENST00000515487 542 ntTSL 4 BASIC6.49□□□□□ -1.37
COL8A1P27658 RNU6-559P-201ENST00000516151 98 ntBASIC6.49□□□□□ -1.37
COL8A1P27658 BTF3P12-201ENST00000519620 469 ntBASIC6.49□□□□□ -1.37
COL8A1P27658 AC025524.2-202ENST00000523042 535 ntTSL 4 BASIC6.49□□□□□ -1.37
COL8A1P27658 AP001893.3-201ENST00000532357 569 ntTSL 4 BASIC6.49□□□□□ -1.37
COL8A1P27658 AC078778.1-201ENST00000547177 735 ntTSL 3 BASIC6.49□□□□□ -1.37
COL8A1P27658 LINC01579-205ENST00000556447 791 ntTSL 4 BASIC6.49□□□□□ -1.37
COL8A1P27658 TRIM69-204ENST00000558329 1211 ntTSL 1 (best) BASIC6.49□□□□□ -1.37
COL8A1P27658 TRIM69-208ENST00000560442 1262 ntTSL 1 (best) BASIC6.49□□□□□ -1.37
COL8A1P27658 AC034105.3-201ENST00000565294 442 ntBASIC6.49□□□□□ -1.37
COL8A1P27658 AC137056.1-202ENST00000575772 753 ntTSL 2 BASIC6.49□□□□□ -1.37
COL8A1P27658 LINC01908-201ENST00000583148 555 ntTSL 4 BASIC6.49□□□□□ -1.37
COL8A1P27658 AL713866.2-201ENST00000603579 219 ntBASIC6.49□□□□□ -1.37
COL8A1P27658 AC112187.2-201ENST00000604345 283 ntBASIC6.49□□□□□ -1.37
COL8A1P27658 LINC01320-206ENST00000607437 528 ntTSL 5 BASIC6.49□□□□□ -1.37
COL8A1P27658 AC061709.1-202ENST00000615029 527 ntTSL 3 BASIC6.49□□□□□ -1.37
COL8A1P27658 MIAT_exon1.1-201ENST00000617016 135 ntBASIC6.49□□□□□ -1.37
COL8A1P27658 RMST_5.1-201ENST00000618704 126 ntBASIC6.49□□□□□ -1.37
COL8A1P27658 Metazoa_SRP.108-201ENST00000621610 300 ntBASIC6.49□□□□□ -1.37
COL8A1P27658 C3orf79-201ENST00000623038 580 ntTSL 1 (best) BASIC6.49□□□□□ -1.37
COL8A1P27658 AP006248.2-201ENST00000623309 592 ntBASIC6.49□□□□□ -1.37
COL8A1P27658 AC211433.3-201ENST00000623770 375 ntBASIC6.49□□□□□ -1.37
COL8A1P27658 LAMTOR5-AS1-248ENST00000630488 703 ntTSL 5 BASIC6.49□□□□□ -1.37
COL8A1P27658 KCNN3-205ENST00000618040 13057 ntTSL 5 BASIC6.49□□□□□ -1.37
Retrieved 100 of 98,524 protein–RNA pairs in 77.6 ms