Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 TPTE2P1-203ENST00000434100 514 ntTSL 3 BASIC6.56□□□□□ -1.36
COL6A1P12109 AF127577.2-201ENST00000436429 824 ntTSL 3 BASIC6.56□□□□□ -1.36
COL6A1P12109 MTND4P6-201ENST00000438297 472 ntBASIC6.56□□□□□ -1.36
COL6A1P12109 AC007655.1-201ENST00000444324 357 ntTSL 3 BASIC6.56□□□□□ -1.36
COL6A1P12109 AL161629.1-201ENST00000446201 457 ntTSL 3 BASIC6.56□□□□□ -1.36
COL6A1P12109 ELOCP30-201ENST00000447108 299 ntBASIC6.56□□□□□ -1.36
COL6A1P12109 FRG2FP-204ENST00000453982 852 ntBASIC6.56□□□□□ -1.36
COL6A1P12109 RANP1-206ENST00000455094 651 ntBASIC6.56□□□□□ -1.36
COL6A1P12109 AC005304.1-201ENST00000457609 405 ntTSL 3 BASIC6.56□□□□□ -1.36
COL6A1P12109 RPL35AP28-201ENST00000459730 331 ntBASIC6.56□□□□□ -1.36
COL6A1P12109 AC096754.1-201ENST00000508904 818 ntBASIC6.56□□□□□ -1.36
COL6A1P12109 AC018709.1-201ENST00000509111 700 ntAPPRIS P1 TSL 3 BASIC6.56□□□□□ -1.36
COL6A1P12109 AC147055.3-201ENST00000510547 851 ntBASIC6.56□□□□□ -1.36
COL6A1P12109 OR5D15P-201ENST00000531671 942 ntBASIC6.56□□□□□ -1.36
COL6A1P12109 GCSHP4-201ENST00000538792 439 ntBASIC6.56□□□□□ -1.36
COL6A1P12109 AC023050.2-201ENST00000544968 387 ntBASIC6.56□□□□□ -1.36
COL6A1P12109 LINC02294-201ENST00000549330 497 ntTSL 2 BASIC6.56□□□□□ -1.36
COL6A1P12109 NOP56P3-201ENST00000549457 385 ntBASIC6.56□□□□□ -1.36
COL6A1P12109 AC087190.2-201ENST00000565648 731 ntTSL 3 BASIC6.56□□□□□ -1.36
COL6A1P12109 AC007599.1-201ENST00000568688 1174 ntBASIC6.56□□□□□ -1.36
COL6A1P12109 AC144836.1-201ENST00000575911 340 ntTSL 2 BASIC6.56□□□□□ -1.36
COL6A1P12109 MYL12B-204ENST00000584539 1064 ntAPPRIS P1 TSL 3 BASIC6.56□□□□□ -1.36
COL6A1P12109 CT45A1-202ENST00000594565 1007 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
COL6A1P12109 AL139407.1-201ENST00000613826 1175 ntBASIC6.56□□□□□ -1.36
COL6A1P12109 AC017037.3-201ENST00000625016 472 ntBASIC6.56□□□□□ -1.36
COL6A1P12109 AP004243.1-201ENST00000529108 1433 ntAPPRIS P1 TSL 5 BASIC6.56□□□□□ -1.36
COL6A1P12109 POC1B-201ENST00000313546 3001 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
COL6A1P12109 SLC12A1-201ENST00000330289 1764 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
COL6A1P12109 USP46-201ENST00000441222 7954 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
COL6A1P12109 TRPC4-205ENST00000379679 2475 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
COL6A1P12109 MUSK-206ENST00000416899 3344 ntTSL 5 BASIC6.56□□□□□ -1.36
COL6A1P12109 BDNF-203ENST00000395978 3988 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
COL6A1P12109 PBRM1-207ENST00000409767 4849 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
COL6A1P12109 HHLA1-201ENST00000414222 4105 ntAPPRIS ALT2 TSL 5 BASIC6.56□□□□□ -1.36
COL6A1P12109 MMP8-201ENST00000236826 3056 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
COL6A1P12109 CERS3-203ENST00000538112 1856 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
COL6A1P12109 LMO3-235ENST00000616247 3227 ntTSL 5 BASIC6.55□□□□□ -1.36
COL6A1P12109 PLEKHA5-202ENST00000424268 4391 ntTSL 2 BASIC6.55□□□□□ -1.36
COL6A1P12109 MIR4500HG-201ENST00000436290 1675 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
COL6A1P12109 MRE11-204ENST00000407439 2684 ntTSL 2 BASIC6.55□□□□□ -1.36
COL6A1P12109 SRRM1P3-201ENST00000426911 2678 ntBASIC6.55□□□□□ -1.36
COL6A1P12109 MID1-206ENST00000380787 5973 ntAPPRIS P1 TSL 1 (best) BASIC6.55□□□□□ -1.36
COL6A1P12109 NCOR1-202ENST00000395848 3106 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
COL6A1P12109 DGKB-202ENST00000402815 5595 ntAPPRIS ALT1 TSL 5 BASIC6.55□□□□□ -1.36
COL6A1P12109 LGI1-212ENST00000630184 2936 ntTSL 2 BASIC6.55□□□□□ -1.36
COL6A1P12109 LRRC37A16P-202ENST00000586022 3725 ntBASIC6.55□□□□□ -1.36
COL6A1P12109 PCNX4-201ENST00000317623 17339 ntAPPRIS P3 TSL 5 BASIC6.55□□□□□ -1.36
COL6A1P12109 KLHL13-202ENST00000371876 5331 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
COL6A1P12109 AC099506.1-201ENST00000567359 4037 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
COL6A1P12109 AP001541.1-201ENST00000623322 1904 ntBASIC6.55□□□□□ -1.36
COL6A1P12109 PABPC1P8-201ENST00000452851 2086 ntBASIC6.55□□□□□ -1.36
COL6A1P12109 OR14C36-201ENST00000317861 939 ntAPPRIS P1 BASIC6.55□□□□□ -1.36
COL6A1P12109 RNA5SP234-201ENST00000363916 119 ntBASIC6.55□□□□□ -1.36
COL6A1P12109 AL139095.4-201ENST00000379928 500 ntTSL 2 BASIC6.55□□□□□ -1.36
COL6A1P12109 OR51F1-201ENST00000380383 960 ntAPPRIS P5 BASIC6.55□□□□□ -1.36
COL6A1P12109 AMELX-202ENST00000380712 835 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
COL6A1P12109 AMELX-203ENST00000380714 793 ntAPPRIS P1 TSL 1 (best) BASIC6.55□□□□□ -1.36
COL6A1P12109 SNORA56-201ENST00000383966 129 ntBASIC6.55□□□□□ -1.36
COL6A1P12109 AL138880.1-201ENST00000405824 642 ntBASIC6.55□□□□□ -1.36
COL6A1P12109 KCNJ13-203ENST00000410029 1177 ntAPPRIS P1 TSL 1 (best) BASIC6.55□□□□□ -1.36
COL6A1P12109 AL162727.2-201ENST00000428429 395 ntTSL 3 BASIC6.55□□□□□ -1.36
COL6A1P12109 AL162726.1-201ENST00000436084 455 ntTSL 3 BASIC6.55□□□□□ -1.36
COL6A1P12109 UBE2D3P1-201ENST00000436669 444 ntBASIC6.55□□□□□ -1.36
COL6A1P12109 AL122019.1-201ENST00000438575 798 ntTSL 3 BASIC6.55□□□□□ -1.36
COL6A1P12109 RPL23AP23-201ENST00000452590 471 ntBASIC6.55□□□□□ -1.36
COL6A1P12109 AL512328.1-202ENST00000452640 850 ntTSL 3 BASIC6.55□□□□□ -1.36
COL6A1P12109 AC004930.1-201ENST00000470677 254 ntTSL 2 BASIC6.55□□□□□ -1.36
COL6A1P12109 GCSAM-204ENST00000484193 1036 ntAPPRIS ALT1 TSL 2 BASIC6.55□□□□□ -1.36
COL6A1P12109 SOX2-OT-216ENST00000497122 578 ntTSL 4 BASIC6.55□□□□□ -1.36
COL6A1P12109 RPL21P131-201ENST00000497298 483 ntBASIC6.55□□□□□ -1.36
COL6A1P12109 AC010406.1-201ENST00000507948 555 ntTSL 3 BASIC6.55□□□□□ -1.36
COL6A1P12109 AC118282.2-201ENST00000508739 374 ntBASIC6.55□□□□□ -1.36
COL6A1P12109 LINC02200-202ENST00000508879 615 ntTSL 3 BASIC6.55□□□□□ -1.36
COL6A1P12109 AC097515.1-201ENST00000512370 435 ntTSL 2 BASIC6.55□□□□□ -1.36
COL6A1P12109 AP003028.1-203ENST00000525832 444 ntTSL 3 BASIC6.55□□□□□ -1.36
COL6A1P12109 AC108471.2-204ENST00000526807 784 ntTSL 5 BASIC6.55□□□□□ -1.36
COL6A1P12109 AP006259.1-201ENST00000528520 561 ntTSL 2 BASIC6.55□□□□□ -1.36
COL6A1P12109 RNASE9-204ENST00000553541 1136 ntAPPRIS P3 TSL 1 (best) BASIC6.55□□□□□ -1.36
COL6A1P12109 MTND4P33-201ENST00000556706 766 ntBASIC6.55□□□□□ -1.36
COL6A1P12109 AC096996.1-201ENST00000563813 325 ntBASIC6.55□□□□□ -1.36
COL6A1P12109 AC099811.4-201ENST00000592536 496 ntTSL 2 BASIC6.55□□□□□ -1.36
COL6A1P12109 AC097717.1-211ENST00000600604 687 ntTSL 5 BASIC6.55□□□□□ -1.36
COL6A1P12109 BMS1P7-201ENST00000602440 1052 ntBASIC6.55□□□□□ -1.36
COL6A1P12109 AC079880.2-201ENST00000603790 1213 ntBASIC6.55□□□□□ -1.36
COL6A1P12109 PART1_2.1-201ENST00000612397 250 ntBASIC6.55□□□□□ -1.36
COL6A1P12109 RDM1-219ENST00000615378 542 ntTSL 3 BASIC6.55□□□□□ -1.36
COL6A1P12109 AC090510.2-201ENST00000617465 629 ntBASIC6.55□□□□□ -1.36
COL6A1P12109 TCL6_3.1-201ENST00000619064 137 ntBASIC6.55□□□□□ -1.36
COL6A1P12109 OR51F1-202ENST00000624103 939 ntAPPRIS ALT1 BASIC6.55□□□□□ -1.36
COL6A1P12109 CASC11-201ENST00000502463 3301 ntTSL 2 BASIC6.55□□□□□ -1.36
COL6A1P12109 ALB-209ENST00000503124 1741 ntTSL 5 BASIC6.55□□□□□ -1.36
COL6A1P12109 AP000432.2-201ENST00000624164 2048 ntBASIC6.55□□□□□ -1.36
COL6A1P12109 DNAH2-201ENST00000389173 13505 ntAPPRIS P1 TSL 2 BASIC6.55□□□□□ -1.36
COL6A1P12109 HDAC1P2-201ENST00000453661 1398 ntBASIC6.55□□□□□ -1.36
COL6A1P12109 CFAP47-202ENST00000313548 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC6.55□□□□□ -1.36
COL6A1P12109 TTC39DP-201ENST00000416781 1688 ntBASIC6.55□□□□□ -1.36
COL6A1P12109 SOAT1-201ENST00000367619 6835 ntAPPRIS P1 TSL 1 (best) BASIC6.55□□□□□ -1.36
COL6A1P12109 SLC26A5-207ENST00000393729 2422 ntTSL 5 BASIC6.55□□□□□ -1.36
COL6A1P12109 SMG1P7-201ENST00000565246 2704 ntBASIC6.55□□□□□ -1.36
COL6A1P12109 LINC00309-201ENST00000431020 3307 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
Retrieved 100 of 98,524 protein–RNA pairs in 74.6 ms