Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
PCDHGA1Q9Y5H4 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
PCDHGA1Q9Y5H4 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC18.81■□□□□ 0.6
PCDHGA1Q9Y5H4 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC18.81■□□□□ 0.6
PCDHGA1Q9Y5H4 CD320-202ENST00000537716 1119 ntTSL 2 BASIC18.81■□□□□ 0.6
PCDHGA1Q9Y5H4 AL353719.1-201ENST00000566847 864 ntBASIC18.81■□□□□ 0.6
PCDHGA1Q9Y5H4 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
PCDHGA1Q9Y5H4 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC18.81■□□□□ 0.6
PCDHGA1Q9Y5H4 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC18.81■□□□□ 0.6
PCDHGA1Q9Y5H4 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
PCDHGA1Q9Y5H4 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC18.81■□□□□ 0.6
PCDHGA1Q9Y5H4 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
PCDHGA1Q9Y5H4 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC18.81■□□□□ 0.6
PCDHGA1Q9Y5H4 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
PCDHGA1Q9Y5H4 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
PCDHGA1Q9Y5H4 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
PCDHGA1Q9Y5H4 ERF-202ENST00000440177 2032 ntTSL 2 BASIC18.81■□□□□ 0.6
PCDHGA1Q9Y5H4 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
PCDHGA1Q9Y5H4 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
PCDHGA1Q9Y5H4 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
PCDHGA1Q9Y5H4 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC18.81■□□□□ 0.6
PCDHGA1Q9Y5H4 IER3-202ENST00000376377 1350 ntBASIC18.81■□□□□ 0.6
PCDHGA1Q9Y5H4 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC18.8■□□□□ 0.6
PCDHGA1Q9Y5H4 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
PCDHGA1Q9Y5H4 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
PCDHGA1Q9Y5H4 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
PCDHGA1Q9Y5H4 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
PCDHGA1Q9Y5H4 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC18.8■□□□□ 0.6
PCDHGA1Q9Y5H4 TPM4P1-201ENST00000436100 807 ntBASIC18.8■□□□□ 0.6
PCDHGA1Q9Y5H4 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC18.8■□□□□ 0.6
PCDHGA1Q9Y5H4 CA15P1-201ENST00000481698 905 ntBASIC18.8■□□□□ 0.6
PCDHGA1Q9Y5H4 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC18.8■□□□□ 0.6
PCDHGA1Q9Y5H4 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
PCDHGA1Q9Y5H4 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC18.8■□□□□ 0.6
PCDHGA1Q9Y5H4 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC18.8■□□□□ 0.6
PCDHGA1Q9Y5H4 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
PCDHGA1Q9Y5H4 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC18.8■□□□□ 0.6
PCDHGA1Q9Y5H4 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
PCDHGA1Q9Y5H4 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC18.8■□□□□ 0.6
PCDHGA1Q9Y5H4 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
PCDHGA1Q9Y5H4 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
PCDHGA1Q9Y5H4 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC18.79■□□□□ 0.6
PCDHGA1Q9Y5H4 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
PCDHGA1Q9Y5H4 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
PCDHGA1Q9Y5H4 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
PCDHGA1Q9Y5H4 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
PCDHGA1Q9Y5H4 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
PCDHGA1Q9Y5H4 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC18.79■□□□□ 0.6
PCDHGA1Q9Y5H4 DERL1-203ENST00000419562 918 ntTSL 2 BASIC18.79■□□□□ 0.6
PCDHGA1Q9Y5H4 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
PCDHGA1Q9Y5H4 GLRB-205ENST00000512619 728 ntTSL 3 BASIC18.79■□□□□ 0.6
PCDHGA1Q9Y5H4 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC18.79■□□□□ 0.6
PCDHGA1Q9Y5H4 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC18.79■□□□□ 0.6
PCDHGA1Q9Y5H4 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC18.79■□□□□ 0.6
PCDHGA1Q9Y5H4 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
PCDHGA1Q9Y5H4 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
PCDHGA1Q9Y5H4 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC18.79■□□□□ 0.6
PCDHGA1Q9Y5H4 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
PCDHGA1Q9Y5H4 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
PCDHGA1Q9Y5H4 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
PCDHGA1Q9Y5H4 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC18.78■□□□□ 0.6
PCDHGA1Q9Y5H4 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
PCDHGA1Q9Y5H4 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
PCDHGA1Q9Y5H4 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
PCDHGA1Q9Y5H4 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC18.78■□□□□ 0.6
PCDHGA1Q9Y5H4 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
PCDHGA1Q9Y5H4 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC18.78■□□□□ 0.6
PCDHGA1Q9Y5H4 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
PCDHGA1Q9Y5H4 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
PCDHGA1Q9Y5H4 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC18.78■□□□□ 0.6
PCDHGA1Q9Y5H4 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC18.78■□□□□ 0.6
PCDHGA1Q9Y5H4 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC18.78■□□□□ 0.6
PCDHGA1Q9Y5H4 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC18.78■□□□□ 0.6
PCDHGA1Q9Y5H4 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC18.78■□□□□ 0.6
PCDHGA1Q9Y5H4 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC18.78■□□□□ 0.6
PCDHGA1Q9Y5H4 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
PCDHGA1Q9Y5H4 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
PCDHGA1Q9Y5H4 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC18.78■□□□□ 0.6
PCDHGA1Q9Y5H4 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC18.78■□□□□ 0.6
PCDHGA1Q9Y5H4 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
PCDHGA1Q9Y5H4 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
PCDHGA1Q9Y5H4 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
PCDHGA1Q9Y5H4 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
PCDHGA1Q9Y5H4 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
PCDHGA1Q9Y5H4 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
PCDHGA1Q9Y5H4 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
PCDHGA1Q9Y5H4 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC18.77■□□□□ 0.6
PCDHGA1Q9Y5H4 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC18.77■□□□□ 0.6
PCDHGA1Q9Y5H4 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC18.77■□□□□ 0.6
PCDHGA1Q9Y5H4 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
PCDHGA1Q9Y5H4 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC18.77■□□□□ 0.6
PCDHGA1Q9Y5H4 Z85996.1-201ENST00000494644 937 ntBASIC18.77■□□□□ 0.6
PCDHGA1Q9Y5H4 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC18.77■□□□□ 0.6
PCDHGA1Q9Y5H4 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC18.77■□□□□ 0.6
PCDHGA1Q9Y5H4 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC18.77■□□□□ 0.6
PCDHGA1Q9Y5H4 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC18.77■□□□□ 0.6
PCDHGA1Q9Y5H4 AC140113.3-201ENST00000605663 199 ntBASIC18.77■□□□□ 0.6
PCDHGA1Q9Y5H4 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
PCDHGA1Q9Y5H4 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
PCDHGA1Q9Y5H4 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 20.8 ms