Protein–RNA interactions for Protein: Q96EP1

CHFR, E3 ubiquitin-protein ligase CHFR, humanhuman

Predictions only

Length 664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHFRQ96EP1 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC19.93■□□□□ 0.78
CHFRQ96EP1 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CHFRQ96EP1 AC063952.2-201ENST00000498792 1227 ntBASIC19.93■□□□□ 0.78
CHFRQ96EP1 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC19.93■□□□□ 0.78
CHFRQ96EP1 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC19.93■□□□□ 0.78
CHFRQ96EP1 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC19.93■□□□□ 0.78
CHFRQ96EP1 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC19.93■□□□□ 0.78
CHFRQ96EP1 MYC-208ENST00000641036 567 ntBASIC19.93■□□□□ 0.78
CHFRQ96EP1 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC19.93■□□□□ 0.78
CHFRQ96EP1 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC19.93■□□□□ 0.78
CHFRQ96EP1 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
CHFRQ96EP1 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC19.93■□□□□ 0.78
CHFRQ96EP1 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC19.93■□□□□ 0.78
CHFRQ96EP1 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC19.93■□□□□ 0.78
CHFRQ96EP1 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC19.93■□□□□ 0.78
CHFRQ96EP1 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC19.93■□□□□ 0.78
CHFRQ96EP1 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC19.93■□□□□ 0.78
CHFRQ96EP1 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
CHFRQ96EP1 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
CHFRQ96EP1 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC19.92■□□□□ 0.78
CHFRQ96EP1 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CHFRQ96EP1 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC19.92■□□□□ 0.78
CHFRQ96EP1 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC19.92■□□□□ 0.78
CHFRQ96EP1 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC19.92■□□□□ 0.78
CHFRQ96EP1 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC19.92■□□□□ 0.78
CHFRQ96EP1 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC19.92■□□□□ 0.78
CHFRQ96EP1 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
CHFRQ96EP1 BX664615.1-201ENST00000443558 458 ntBASIC19.92■□□□□ 0.78
CHFRQ96EP1 FAM207BP-201ENST00000447172 505 ntBASIC19.92■□□□□ 0.78
CHFRQ96EP1 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC19.92■□□□□ 0.78
CHFRQ96EP1 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC19.92■□□□□ 0.78
CHFRQ96EP1 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC19.92■□□□□ 0.78
CHFRQ96EP1 AC022616.7-201ENST00000525383 220 ntBASIC19.92■□□□□ 0.78
CHFRQ96EP1 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC19.92■□□□□ 0.78
CHFRQ96EP1 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CHFRQ96EP1 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC19.92■□□□□ 0.78
CHFRQ96EP1 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
CHFRQ96EP1 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CHFRQ96EP1 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CHFRQ96EP1 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC19.92■□□□□ 0.78
CHFRQ96EP1 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC19.91■□□□□ 0.78
CHFRQ96EP1 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
CHFRQ96EP1 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CHFRQ96EP1 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CHFRQ96EP1 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC19.91■□□□□ 0.78
CHFRQ96EP1 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
CHFRQ96EP1 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
CHFRQ96EP1 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CHFRQ96EP1 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
CHFRQ96EP1 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC19.91■□□□□ 0.78
CHFRQ96EP1 HMGA1P5-201ENST00000412453 271 ntBASIC19.91■□□□□ 0.78
CHFRQ96EP1 AK4P3-201ENST00000418260 669 ntBASIC19.91■□□□□ 0.78
CHFRQ96EP1 ISCU-203ENST00000431221 799 ntTSL 2 BASIC19.91■□□□□ 0.78
CHFRQ96EP1 AC007663.1-201ENST00000438948 1240 ntBASIC19.91■□□□□ 0.78
CHFRQ96EP1 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC19.91■□□□□ 0.78
CHFRQ96EP1 AL023803.3-201ENST00000615559 522 ntBASIC19.91■□□□□ 0.78
CHFRQ96EP1 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC19.91■□□□□ 0.78
CHFRQ96EP1 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
CHFRQ96EP1 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CHFRQ96EP1 AC092338.2-201ENST00000568827 1415 ntBASIC19.91■□□□□ 0.78
CHFRQ96EP1 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC19.91■□□□□ 0.78
CHFRQ96EP1 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CHFRQ96EP1 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CHFRQ96EP1 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
CHFRQ96EP1 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CHFRQ96EP1 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CHFRQ96EP1 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CHFRQ96EP1 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
CHFRQ96EP1 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
CHFRQ96EP1 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
CHFRQ96EP1 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC19.9■□□□□ 0.78
CHFRQ96EP1 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC19.9■□□□□ 0.78
CHFRQ96EP1 AC139887.4-201ENST00000607877 719 ntBASIC19.9■□□□□ 0.78
CHFRQ96EP1 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC19.9■□□□□ 0.78
CHFRQ96EP1 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC19.9■□□□□ 0.78
CHFRQ96EP1 KRT8P8-201ENST00000434750 1448 ntBASIC19.9■□□□□ 0.78
CHFRQ96EP1 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
CHFRQ96EP1 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
CHFRQ96EP1 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CHFRQ96EP1 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC19.9■□□□□ 0.78
CHFRQ96EP1 LINC01465-201ENST00000408887 1940 ntBASIC19.9■□□□□ 0.78
CHFRQ96EP1 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC19.9■□□□□ 0.78
CHFRQ96EP1 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CHFRQ96EP1 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC19.9■□□□□ 0.78
CHFRQ96EP1 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CHFRQ96EP1 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CHFRQ96EP1 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC19.89■□□□□ 0.78
CHFRQ96EP1 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CHFRQ96EP1 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CHFRQ96EP1 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC19.89■□□□□ 0.77
CHFRQ96EP1 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC19.89■□□□□ 0.77
CHFRQ96EP1 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CHFRQ96EP1 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC19.89■□□□□ 0.77
CHFRQ96EP1 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC19.89■□□□□ 0.77
CHFRQ96EP1 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC19.89■□□□□ 0.77
CHFRQ96EP1 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC19.89■□□□□ 0.77
CHFRQ96EP1 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CHFRQ96EP1 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC19.89■□□□□ 0.77
CHFRQ96EP1 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC19.89■□□□□ 0.77
CHFRQ96EP1 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC19.89■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 34.2 ms