Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
DEPDC4Q8N2C3 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
DEPDC4Q8N2C3 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
DEPDC4Q8N2C3 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC18.14■□□□□ 0.49
DEPDC4Q8N2C3 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
DEPDC4Q8N2C3 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
DEPDC4Q8N2C3 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
DEPDC4Q8N2C3 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC18.13■□□□□ 0.49
DEPDC4Q8N2C3 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
DEPDC4Q8N2C3 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
DEPDC4Q8N2C3 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
DEPDC4Q8N2C3 AL355802.2-201ENST00000402069 882 ntBASIC18.13■□□□□ 0.49
DEPDC4Q8N2C3 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC18.13■□□□□ 0.49
DEPDC4Q8N2C3 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC18.13■□□□□ 0.49
DEPDC4Q8N2C3 AC007322.4-201ENST00000509611 723 ntBASIC18.13■□□□□ 0.49
DEPDC4Q8N2C3 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC18.13■□□□□ 0.49
DEPDC4Q8N2C3 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC18.13■□□□□ 0.49
DEPDC4Q8N2C3 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
DEPDC4Q8N2C3 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
DEPDC4Q8N2C3 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
DEPDC4Q8N2C3 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
DEPDC4Q8N2C3 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
DEPDC4Q8N2C3 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
DEPDC4Q8N2C3 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
DEPDC4Q8N2C3 AL032819.2-201ENST00000624543 2162 ntBASIC18.13■□□□□ 0.49
DEPDC4Q8N2C3 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC18.12■□□□□ 0.49
DEPDC4Q8N2C3 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
DEPDC4Q8N2C3 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC18.12■□□□□ 0.49
DEPDC4Q8N2C3 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
DEPDC4Q8N2C3 FZD10-202ENST00000539839 3282 ntBASIC18.12■□□□□ 0.49
DEPDC4Q8N2C3 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
DEPDC4Q8N2C3 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC18.12■□□□□ 0.49
DEPDC4Q8N2C3 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
DEPDC4Q8N2C3 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
DEPDC4Q8N2C3 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC18.12■□□□□ 0.49
DEPDC4Q8N2C3 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
DEPDC4Q8N2C3 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
DEPDC4Q8N2C3 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC18.12■□□□□ 0.49
DEPDC4Q8N2C3 OAS3-207ENST00000551007 998 ntTSL 2 BASIC18.12■□□□□ 0.49
DEPDC4Q8N2C3 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC18.12■□□□□ 0.49
DEPDC4Q8N2C3 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
DEPDC4Q8N2C3 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC18.12■□□□□ 0.49
DEPDC4Q8N2C3 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC18.12■□□□□ 0.49
DEPDC4Q8N2C3 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
DEPDC4Q8N2C3 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
DEPDC4Q8N2C3 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC18.12■□□□□ 0.49
DEPDC4Q8N2C3 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
DEPDC4Q8N2C3 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC18.12■□□□□ 0.49
DEPDC4Q8N2C3 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
DEPDC4Q8N2C3 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
DEPDC4Q8N2C3 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC18.12■□□□□ 0.49
DEPDC4Q8N2C3 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
DEPDC4Q8N2C3 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
DEPDC4Q8N2C3 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC18.11■□□□□ 0.49
DEPDC4Q8N2C3 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
DEPDC4Q8N2C3 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC18.11■□□□□ 0.49
DEPDC4Q8N2C3 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC18.11■□□□□ 0.49
DEPDC4Q8N2C3 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
DEPDC4Q8N2C3 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
DEPDC4Q8N2C3 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
DEPDC4Q8N2C3 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
DEPDC4Q8N2C3 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
DEPDC4Q8N2C3 CNN2P6-201ENST00000439038 900 ntBASIC18.11■□□□□ 0.49
DEPDC4Q8N2C3 AC105036.2-201ENST00000569468 176 ntBASIC18.11■□□□□ 0.49
DEPDC4Q8N2C3 AC133552.2-202ENST00000575694 574 ntBASIC18.11■□□□□ 0.49
DEPDC4Q8N2C3 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC18.11■□□□□ 0.49
DEPDC4Q8N2C3 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC18.11■□□□□ 0.49
DEPDC4Q8N2C3 PFKL-212ENST00000628044 129 ntTSL 3 BASIC18.11■□□□□ 0.49
DEPDC4Q8N2C3 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC18.11■□□□□ 0.49
DEPDC4Q8N2C3 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
DEPDC4Q8N2C3 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC18.11■□□□□ 0.49
DEPDC4Q8N2C3 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC18.11■□□□□ 0.49
DEPDC4Q8N2C3 STK25-205ENST00000405883 1904 ntTSL 2 BASIC18.11■□□□□ 0.49
DEPDC4Q8N2C3 TP73-202ENST00000354437 2140 ntTSL 5 BASIC18.11■□□□□ 0.49
DEPDC4Q8N2C3 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
DEPDC4Q8N2C3 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
DEPDC4Q8N2C3 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
DEPDC4Q8N2C3 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC18.11■□□□□ 0.49
DEPDC4Q8N2C3 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC18.11■□□□□ 0.49
DEPDC4Q8N2C3 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
DEPDC4Q8N2C3 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
DEPDC4Q8N2C3 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
DEPDC4Q8N2C3 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC18.1■□□□□ 0.49
DEPDC4Q8N2C3 AL138781.2-201ENST00000617896 1843 ntBASIC18.1■□□□□ 0.49
DEPDC4Q8N2C3 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
DEPDC4Q8N2C3 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
DEPDC4Q8N2C3 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
DEPDC4Q8N2C3 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
DEPDC4Q8N2C3 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
DEPDC4Q8N2C3 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
DEPDC4Q8N2C3 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
DEPDC4Q8N2C3 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC18.1■□□□□ 0.49
DEPDC4Q8N2C3 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
DEPDC4Q8N2C3 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
DEPDC4Q8N2C3 DENND3-207ENST00000518347 850 ntTSL 2 BASIC18.1■□□□□ 0.49
DEPDC4Q8N2C3 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
DEPDC4Q8N2C3 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
DEPDC4Q8N2C3 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC18.1■□□□□ 0.49
DEPDC4Q8N2C3 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
DEPDC4Q8N2C3 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 22 ms