Protein–RNA interactions for Protein: Q5THJ4

VPS13D, Vacuolar protein sorting-associated protein 13D, humanhuman

Predictions only

Length 4,388 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13DQ5THJ4 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC13.2□□□□□ -0.3
VPS13DQ5THJ4 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC13.2□□□□□ -0.3
VPS13DQ5THJ4 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
VPS13DQ5THJ4 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC13.2□□□□□ -0.3
VPS13DQ5THJ4 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
VPS13DQ5THJ4 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC13.2□□□□□ -0.3
VPS13DQ5THJ4 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
VPS13DQ5THJ4 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC13.2□□□□□ -0.3
VPS13DQ5THJ4 KRT8P10-201ENST00000450021 1447 ntBASIC13.2□□□□□ -0.3
VPS13DQ5THJ4 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC13.2□□□□□ -0.3
VPS13DQ5THJ4 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC13.2□□□□□ -0.3
VPS13DQ5THJ4 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC13.2□□□□□ -0.3
VPS13DQ5THJ4 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
VPS13DQ5THJ4 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC13.2□□□□□ -0.3
VPS13DQ5THJ4 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
VPS13DQ5THJ4 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
VPS13DQ5THJ4 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
VPS13DQ5THJ4 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
VPS13DQ5THJ4 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
VPS13DQ5THJ4 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
VPS13DQ5THJ4 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
VPS13DQ5THJ4 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC13.2□□□□□ -0.3
VPS13DQ5THJ4 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
VPS13DQ5THJ4 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC13.2□□□□□ -0.3
VPS13DQ5THJ4 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
VPS13DQ5THJ4 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC13.2□□□□□ -0.3
VPS13DQ5THJ4 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
VPS13DQ5THJ4 CNP-204ENST00000472031 1019 ntTSL 2 BASIC13.2□□□□□ -0.3
VPS13DQ5THJ4 AL512604.3-201ENST00000569583 964 ntBASIC13.2□□□□□ -0.3
VPS13DQ5THJ4 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC13.19□□□□□ -0.3
VPS13DQ5THJ4 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
VPS13DQ5THJ4 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC13.19□□□□□ -0.3
VPS13DQ5THJ4 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC13.19□□□□□ -0.3
VPS13DQ5THJ4 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
VPS13DQ5THJ4 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
VPS13DQ5THJ4 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC13.19□□□□□ -0.3
VPS13DQ5THJ4 PCED1CP-201ENST00000419887 785 ntBASIC13.19□□□□□ -0.3
VPS13DQ5THJ4 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
VPS13DQ5THJ4 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC13.19□□□□□ -0.3
VPS13DQ5THJ4 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC13.19□□□□□ -0.3
VPS13DQ5THJ4 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
VPS13DQ5THJ4 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC13.19□□□□□ -0.3
VPS13DQ5THJ4 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC13.19□□□□□ -0.3
VPS13DQ5THJ4 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC13.19□□□□□ -0.3
VPS13DQ5THJ4 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
VPS13DQ5THJ4 IER3-202ENST00000376377 1350 ntBASIC13.19□□□□□ -0.3
VPS13DQ5THJ4 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC13.19□□□□□ -0.3
VPS13DQ5THJ4 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
VPS13DQ5THJ4 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC13.19□□□□□ -0.3
VPS13DQ5THJ4 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC13.19□□□□□ -0.3
VPS13DQ5THJ4 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
VPS13DQ5THJ4 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
VPS13DQ5THJ4 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC13.19□□□□□ -0.3
VPS13DQ5THJ4 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
VPS13DQ5THJ4 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
VPS13DQ5THJ4 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
VPS13DQ5THJ4 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC13.19□□□□□ -0.3
VPS13DQ5THJ4 AL845331.1-201ENST00000424978 1190 ntBASIC13.19□□□□□ -0.3
VPS13DQ5THJ4 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC13.19□□□□□ -0.3
VPS13DQ5THJ4 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC13.19□□□□□ -0.3
VPS13DQ5THJ4 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
VPS13DQ5THJ4 CR769767.2-201ENST00000622735 460 ntBASIC13.19□□□□□ -0.3
VPS13DQ5THJ4 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
VPS13DQ5THJ4 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC13.19□□□□□ -0.3
VPS13DQ5THJ4 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC13.19□□□□□ -0.3
VPS13DQ5THJ4 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
VPS13DQ5THJ4 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC13.19□□□□□ -0.3
VPS13DQ5THJ4 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
VPS13DQ5THJ4 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC13.18□□□□□ -0.3
VPS13DQ5THJ4 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC13.18□□□□□ -0.3
VPS13DQ5THJ4 AP000523.1-201ENST00000398242 1049 ntBASIC13.18□□□□□ -0.3
VPS13DQ5THJ4 CKBP1-201ENST00000565489 1086 ntBASIC13.18□□□□□ -0.3
VPS13DQ5THJ4 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC13.18□□□□□ -0.3
VPS13DQ5THJ4 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
VPS13DQ5THJ4 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC13.18□□□□□ -0.3
VPS13DQ5THJ4 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC13.18□□□□□ -0.3
VPS13DQ5THJ4 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
VPS13DQ5THJ4 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
VPS13DQ5THJ4 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
VPS13DQ5THJ4 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
VPS13DQ5THJ4 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC13.18□□□□□ -0.3
VPS13DQ5THJ4 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC13.18□□□□□ -0.3
VPS13DQ5THJ4 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
VPS13DQ5THJ4 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC13.18□□□□□ -0.3
VPS13DQ5THJ4 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC13.18□□□□□ -0.3
VPS13DQ5THJ4 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
VPS13DQ5THJ4 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
VPS13DQ5THJ4 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
VPS13DQ5THJ4 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC13.18□□□□□ -0.3
VPS13DQ5THJ4 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC13.18□□□□□ -0.3
VPS13DQ5THJ4 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
VPS13DQ5THJ4 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
VPS13DQ5THJ4 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC13.18□□□□□ -0.3
VPS13DQ5THJ4 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
VPS13DQ5THJ4 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
VPS13DQ5THJ4 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
VPS13DQ5THJ4 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
VPS13DQ5THJ4 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
VPS13DQ5THJ4 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
VPS13DQ5THJ4 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 11.7 ms