Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
COL28A1Q2UY09 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
COL28A1Q2UY09 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC18.77■□□□□ 0.6
COL28A1Q2UY09 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC18.77■□□□□ 0.6
COL28A1Q2UY09 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
COL28A1Q2UY09 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
COL28A1Q2UY09 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC18.77■□□□□ 0.6
COL28A1Q2UY09 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
COL28A1Q2UY09 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
COL28A1Q2UY09 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC18.77■□□□□ 0.6
COL28A1Q2UY09 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
COL28A1Q2UY09 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
COL28A1Q2UY09 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
COL28A1Q2UY09 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
COL28A1Q2UY09 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC18.77■□□□□ 0.6
COL28A1Q2UY09 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
COL28A1Q2UY09 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC18.77■□□□□ 0.6
COL28A1Q2UY09 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC18.77■□□□□ 0.6
COL28A1Q2UY09 EGLN1P1-201ENST00000531623 762 ntBASIC18.77■□□□□ 0.6
COL28A1Q2UY09 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
COL28A1Q2UY09 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC18.77■□□□□ 0.6
COL28A1Q2UY09 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC18.77■□□□□ 0.6
COL28A1Q2UY09 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
COL28A1Q2UY09 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
COL28A1Q2UY09 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC18.77■□□□□ 0.6
COL28A1Q2UY09 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.59
COL28A1Q2UY09 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.59
COL28A1Q2UY09 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
COL28A1Q2UY09 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
COL28A1Q2UY09 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.59
COL28A1Q2UY09 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
COL28A1Q2UY09 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
COL28A1Q2UY09 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC18.76■□□□□ 0.59
COL28A1Q2UY09 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
COL28A1Q2UY09 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC18.76■□□□□ 0.59
COL28A1Q2UY09 AC006128.1-201ENST00000624704 1661 ntBASIC18.76■□□□□ 0.59
COL28A1Q2UY09 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
COL28A1Q2UY09 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
COL28A1Q2UY09 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
COL28A1Q2UY09 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
COL28A1Q2UY09 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
COL28A1Q2UY09 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
COL28A1Q2UY09 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
COL28A1Q2UY09 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC18.76■□□□□ 0.59
COL28A1Q2UY09 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
COL28A1Q2UY09 KSR1P1-201ENST00000446298 240 ntBASIC18.76■□□□□ 0.59
COL28A1Q2UY09 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC18.76■□□□□ 0.59
COL28A1Q2UY09 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC18.76■□□□□ 0.59
COL28A1Q2UY09 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC18.76■□□□□ 0.59
COL28A1Q2UY09 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC18.76■□□□□ 0.59
COL28A1Q2UY09 NDUFV2-AS1-203ENST00000608008 779 ntBASIC18.76■□□□□ 0.59
COL28A1Q2UY09 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC18.76■□□□□ 0.59
COL28A1Q2UY09 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
COL28A1Q2UY09 IER3-202ENST00000376377 1350 ntBASIC18.76■□□□□ 0.59
COL28A1Q2UY09 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
COL28A1Q2UY09 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
COL28A1Q2UY09 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
COL28A1Q2UY09 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
COL28A1Q2UY09 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC18.76■□□□□ 0.59
COL28A1Q2UY09 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
COL28A1Q2UY09 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC18.76■□□□□ 0.59
COL28A1Q2UY09 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC18.76■□□□□ 0.59
COL28A1Q2UY09 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC18.76■□□□□ 0.59
COL28A1Q2UY09 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
COL28A1Q2UY09 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC18.75■□□□□ 0.59
COL28A1Q2UY09 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC18.75■□□□□ 0.59
COL28A1Q2UY09 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
COL28A1Q2UY09 KRT16P1-201ENST00000399124 1418 ntBASIC18.75■□□□□ 0.59
COL28A1Q2UY09 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
COL28A1Q2UY09 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC18.75■□□□□ 0.59
COL28A1Q2UY09 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC18.75■□□□□ 0.59
COL28A1Q2UY09 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC18.75■□□□□ 0.59
COL28A1Q2UY09 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
COL28A1Q2UY09 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
COL28A1Q2UY09 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
COL28A1Q2UY09 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
COL28A1Q2UY09 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
COL28A1Q2UY09 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC18.75■□□□□ 0.59
COL28A1Q2UY09 RNF152P1-201ENST00000397754 604 ntBASIC18.75■□□□□ 0.59
COL28A1Q2UY09 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC18.75■□□□□ 0.59
COL28A1Q2UY09 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC18.75■□□□□ 0.59
COL28A1Q2UY09 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC18.75■□□□□ 0.59
COL28A1Q2UY09 AC092647.4-201ENST00000457211 535 ntBASIC18.75■□□□□ 0.59
COL28A1Q2UY09 AC128688.1-201ENST00000487626 519 ntBASIC18.75■□□□□ 0.59
COL28A1Q2UY09 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC18.75■□□□□ 0.59
COL28A1Q2UY09 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC18.75■□□□□ 0.59
COL28A1Q2UY09 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC18.75■□□□□ 0.59
COL28A1Q2UY09 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC18.75■□□□□ 0.59
COL28A1Q2UY09 GRAMD4P8-201ENST00000605465 1115 ntBASIC18.75■□□□□ 0.59
COL28A1Q2UY09 AC139887.4-201ENST00000607877 719 ntBASIC18.75■□□□□ 0.59
COL28A1Q2UY09 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC18.75■□□□□ 0.59
COL28A1Q2UY09 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC18.75■□□□□ 0.59
COL28A1Q2UY09 STAC-204ENST00000457375 1366 ntTSL 2 BASIC18.75■□□□□ 0.59
COL28A1Q2UY09 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC18.75■□□□□ 0.59
COL28A1Q2UY09 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
COL28A1Q2UY09 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC18.75■□□□□ 0.59
COL28A1Q2UY09 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC18.75■□□□□ 0.59
COL28A1Q2UY09 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC18.75■□□□□ 0.59
COL28A1Q2UY09 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
COL28A1Q2UY09 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC18.74■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 31.2 ms