Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 RNA5SP413-201ENST00000516373 109 ntBASIC15.73■□□□□ 0.11
CX3CL1P78423 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC15.73■□□□□ 0.11
CX3CL1P78423 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CX3CL1P78423 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CX3CL1P78423 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CX3CL1P78423 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CX3CL1P78423 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC15.72■□□□□ 0.11
CX3CL1P78423 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CX3CL1P78423 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
CX3CL1P78423 TMEM179-206ENST00000616017 1645 ntBASIC15.72■□□□□ 0.11
CX3CL1P78423 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC15.72■□□□□ 0.11
CX3CL1P78423 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC15.72■□□□□ 0.11
CX3CL1P78423 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
CX3CL1P78423 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CX3CL1P78423 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
CX3CL1P78423 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
CX3CL1P78423 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
CX3CL1P78423 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CX3CL1P78423 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC15.72■□□□□ 0.11
CX3CL1P78423 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
CX3CL1P78423 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CX3CL1P78423 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CX3CL1P78423 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC15.72■□□□□ 0.11
CX3CL1P78423 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CX3CL1P78423 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CX3CL1P78423 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC15.72■□□□□ 0.11
CX3CL1P78423 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CX3CL1P78423 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC15.72■□□□□ 0.11
CX3CL1P78423 ABHD17AP6-201ENST00000458502 1044 ntBASIC15.72■□□□□ 0.11
CX3CL1P78423 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
CX3CL1P78423 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC15.72■□□□□ 0.11
CX3CL1P78423 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC15.72■□□□□ 0.11
CX3CL1P78423 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CX3CL1P78423 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC15.72■□□□□ 0.11
CX3CL1P78423 SOX15-203ENST00000570788 1093 ntBASIC15.72■□□□□ 0.11
CX3CL1P78423 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
CX3CL1P78423 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC15.72■□□□□ 0.11
CX3CL1P78423 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC15.72■□□□□ 0.11
CX3CL1P78423 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC15.72■□□□□ 0.11
CX3CL1P78423 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC15.72■□□□□ 0.11
CX3CL1P78423 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
CX3CL1P78423 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC15.72■□□□□ 0.11
CX3CL1P78423 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC15.72■□□□□ 0.11
CX3CL1P78423 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
CX3CL1P78423 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC15.71■□□□□ 0.11
CX3CL1P78423 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.11
CX3CL1P78423 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
CX3CL1P78423 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
CX3CL1P78423 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC15.71■□□□□ 0.11
CX3CL1P78423 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC15.71■□□□□ 0.11
CX3CL1P78423 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.11
CX3CL1P78423 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC15.71■□□□□ 0.11
CX3CL1P78423 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
CX3CL1P78423 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.11
CX3CL1P78423 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.11
CX3CL1P78423 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
CX3CL1P78423 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC15.71■□□□□ 0.11
CX3CL1P78423 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
CX3CL1P78423 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC15.71■□□□□ 0.11
CX3CL1P78423 RPS2P52-201ENST00000469610 820 ntBASIC15.71■□□□□ 0.11
CX3CL1P78423 UNC93B4-201ENST00000505679 747 ntBASIC15.71■□□□□ 0.11
CX3CL1P78423 UNC93B5-201ENST00000530315 699 ntBASIC15.71■□□□□ 0.11
CX3CL1P78423 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC15.71■□□□□ 0.11
CX3CL1P78423 KRT18P6-201ENST00000555540 1265 ntBASIC15.71■□□□□ 0.11
CX3CL1P78423 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC15.71■□□□□ 0.11
CX3CL1P78423 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC15.71■□□□□ 0.11
CX3CL1P78423 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC15.71■□□□□ 0.11
CX3CL1P78423 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC15.71■□□□□ 0.11
CX3CL1P78423 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC15.71■□□□□ 0.11
CX3CL1P78423 AC116562.4-201ENST00000641316 2276 ntBASIC15.71■□□□□ 0.11
CX3CL1P78423 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC15.71■□□□□ 0.11
CX3CL1P78423 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC15.71■□□□□ 0.11
CX3CL1P78423 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
CX3CL1P78423 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.1
CX3CL1P78423 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
CX3CL1P78423 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC15.71■□□□□ 0.1
CX3CL1P78423 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC15.7■□□□□ 0.1
CX3CL1P78423 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
CX3CL1P78423 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CX3CL1P78423 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC15.7■□□□□ 0.1
CX3CL1P78423 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CX3CL1P78423 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CX3CL1P78423 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC15.7■□□□□ 0.1
CX3CL1P78423 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC15.7■□□□□ 0.1
CX3CL1P78423 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CX3CL1P78423 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC15.7■□□□□ 0.1
CX3CL1P78423 CALM3-202ENST00000391918 702 ntTSL 2 BASIC15.7■□□□□ 0.1
CX3CL1P78423 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC15.7■□□□□ 0.1
CX3CL1P78423 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC15.7■□□□□ 0.1
CX3CL1P78423 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC15.7■□□□□ 0.1
CX3CL1P78423 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
CX3CL1P78423 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC15.7■□□□□ 0.1
CX3CL1P78423 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC15.7■□□□□ 0.1
CX3CL1P78423 AC120498.8-201ENST00000614275 531 ntBASIC15.7■□□□□ 0.1
CX3CL1P78423 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
CX3CL1P78423 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CX3CL1P78423 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC15.7■□□□□ 0.1
CX3CL1P78423 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
CX3CL1P78423 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC15.7■□□□□ 0.1
CX3CL1P78423 AC009237.14-201ENST00000609975 1594 ntBASIC15.7■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 19.6 ms