Protein–RNA interactions for Protein: P62068

USP46, Ubiquitin carboxyl-terminal hydrolase 46, humanhuman

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP46P62068 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
USP46P62068 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
USP46P62068 NUDT16P1-203ENST00000513809 620 ntBASIC20.57■□□□□ 0.88
USP46P62068 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC20.57■□□□□ 0.88
USP46P62068 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC20.57■□□□□ 0.88
USP46P62068 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC20.57■□□□□ 0.88
USP46P62068 REXO1L10P-201ENST00000615707 1290 ntBASIC20.57■□□□□ 0.88
USP46P62068 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
USP46P62068 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC20.57■□□□□ 0.88
USP46P62068 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
USP46P62068 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC20.57■□□□□ 0.88
USP46P62068 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
USP46P62068 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
USP46P62068 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
USP46P62068 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC20.56■□□□□ 0.88
USP46P62068 USP39-204ENST00000409766 2033 ntTSL 2 BASIC20.56■□□□□ 0.88
USP46P62068 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC20.56■□□□□ 0.88
USP46P62068 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC20.56■□□□□ 0.88
USP46P62068 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
USP46P62068 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC20.56■□□□□ 0.88
USP46P62068 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC20.56■□□□□ 0.88
USP46P62068 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC20.56■□□□□ 0.88
USP46P62068 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
USP46P62068 KRT16P1-201ENST00000399124 1418 ntBASIC20.56■□□□□ 0.88
USP46P62068 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
USP46P62068 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
USP46P62068 AC211429.1-201ENST00000415277 523 ntBASIC20.56■□□□□ 0.88
USP46P62068 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC20.56■□□□□ 0.88
USP46P62068 RPS20-210ENST00000523936 899 ntTSL 2 BASIC20.56■□□□□ 0.88
USP46P62068 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC20.56■□□□□ 0.88
USP46P62068 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC20.56■□□□□ 0.88
USP46P62068 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC20.56■□□□□ 0.88
USP46P62068 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
USP46P62068 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC20.56■□□□□ 0.88
USP46P62068 AC112907.3-201ENST00000577781 2400 ntBASIC20.56■□□□□ 0.88
USP46P62068 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
USP46P62068 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
USP46P62068 GOLGA2P11-201ENST00000562660 1621 ntBASIC20.56■□□□□ 0.88
USP46P62068 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC20.56■□□□□ 0.88
USP46P62068 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC20.56■□□□□ 0.88
USP46P62068 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
USP46P62068 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC20.55■□□□□ 0.88
USP46P62068 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC20.55■□□□□ 0.88
USP46P62068 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
USP46P62068 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC20.55■□□□□ 0.88
USP46P62068 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
USP46P62068 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
USP46P62068 LINC01521-201ENST00000504184 1943 ntBASIC20.55■□□□□ 0.88
USP46P62068 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
USP46P62068 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC20.55■□□□□ 0.88
USP46P62068 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
USP46P62068 MCC-208ENST00000514701 2855 ntTSL 2 BASIC20.55■□□□□ 0.88
USP46P62068 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
USP46P62068 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
USP46P62068 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
USP46P62068 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
USP46P62068 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
USP46P62068 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC20.55■□□□□ 0.88
USP46P62068 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
USP46P62068 ECEL1P3-201ENST00000427961 737 ntBASIC20.55■□□□□ 0.88
USP46P62068 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC20.55■□□□□ 0.88
USP46P62068 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC20.55■□□□□ 0.88
USP46P62068 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC20.55■□□□□ 0.88
USP46P62068 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
USP46P62068 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
USP46P62068 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
USP46P62068 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC20.55■□□□□ 0.88
USP46P62068 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
USP46P62068 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC20.55■□□□□ 0.88
USP46P62068 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC20.55■□□□□ 0.88
USP46P62068 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
USP46P62068 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
USP46P62068 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
USP46P62068 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
USP46P62068 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
USP46P62068 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
USP46P62068 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
USP46P62068 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
USP46P62068 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC20.54■□□□□ 0.88
USP46P62068 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
USP46P62068 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC20.54■□□□□ 0.88
USP46P62068 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC20.54■□□□□ 0.88
USP46P62068 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
USP46P62068 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC20.54■□□□□ 0.88
USP46P62068 DECR2-212ENST00000627716 352 ntTSL 2 BASIC20.54■□□□□ 0.88
USP46P62068 ABBA01031674.1-201ENST00000635145 728 ntBASIC20.54■□□□□ 0.88
USP46P62068 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
USP46P62068 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC20.54■□□□□ 0.88
USP46P62068 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
USP46P62068 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
USP46P62068 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
USP46P62068 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
USP46P62068 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC20.53■□□□□ 0.88
USP46P62068 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
USP46P62068 AC087499.1-201ENST00000418141 1075 ntBASIC20.53■□□□□ 0.88
USP46P62068 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC20.53■□□□□ 0.88
USP46P62068 RBM17P1-201ENST00000453646 1190 ntBASIC20.53■□□□□ 0.88
USP46P62068 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC20.53■□□□□ 0.88
USP46P62068 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC20.53■□□□□ 0.88
USP46P62068 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC20.53■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 26.3 ms