Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
HDAC4P56524 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
HDAC4P56524 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
HDAC4P56524 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
HDAC4P56524 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
HDAC4P56524 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
HDAC4P56524 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC20.42■□□□□ 0.86
HDAC4P56524 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC20.42■□□□□ 0.86
HDAC4P56524 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
HDAC4P56524 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
HDAC4P56524 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
HDAC4P56524 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC20.41■□□□□ 0.86
HDAC4P56524 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
HDAC4P56524 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC20.41■□□□□ 0.86
HDAC4P56524 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC20.41■□□□□ 0.86
HDAC4P56524 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
HDAC4P56524 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
HDAC4P56524 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC20.41■□□□□ 0.86
HDAC4P56524 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC20.41■□□□□ 0.86
HDAC4P56524 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
HDAC4P56524 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC20.41■□□□□ 0.86
HDAC4P56524 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC20.41■□□□□ 0.86
HDAC4P56524 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC20.41■□□□□ 0.86
HDAC4P56524 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
HDAC4P56524 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC20.41■□□□□ 0.86
HDAC4P56524 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC20.41■□□□□ 0.86
HDAC4P56524 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC20.41■□□□□ 0.86
HDAC4P56524 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
HDAC4P56524 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC20.41■□□□□ 0.86
HDAC4P56524 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
HDAC4P56524 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
HDAC4P56524 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
HDAC4P56524 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC20.41■□□□□ 0.86
HDAC4P56524 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
HDAC4P56524 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC20.4■□□□□ 0.86
HDAC4P56524 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
HDAC4P56524 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
HDAC4P56524 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
HDAC4P56524 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
HDAC4P56524 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
HDAC4P56524 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC20.4■□□□□ 0.86
HDAC4P56524 YBX1P10-201ENST00000444752 975 ntBASIC20.4■□□□□ 0.86
HDAC4P56524 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC20.4■□□□□ 0.86
HDAC4P56524 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
HDAC4P56524 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC20.4■□□□□ 0.86
HDAC4P56524 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
HDAC4P56524 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC20.4■□□□□ 0.86
HDAC4P56524 AC006058.3-201ENST00000606217 1069 ntBASIC20.4■□□□□ 0.86
HDAC4P56524 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
HDAC4P56524 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
HDAC4P56524 AC073648.6-201ENST00000641589 218 ntBASIC20.4■□□□□ 0.86
HDAC4P56524 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
HDAC4P56524 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC20.4■□□□□ 0.86
HDAC4P56524 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
HDAC4P56524 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
HDAC4P56524 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC20.39■□□□□ 0.86
HDAC4P56524 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
HDAC4P56524 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC20.39■□□□□ 0.85
HDAC4P56524 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC20.39■□□□□ 0.85
HDAC4P56524 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.85
HDAC4P56524 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
HDAC4P56524 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
HDAC4P56524 TSPY20P-201ENST00000450910 630 ntBASIC20.39■□□□□ 0.85
HDAC4P56524 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC20.39■□□□□ 0.85
HDAC4P56524 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC20.39■□□□□ 0.85
HDAC4P56524 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC20.39■□□□□ 0.85
HDAC4P56524 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC20.39■□□□□ 0.85
HDAC4P56524 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC20.39■□□□□ 0.85
HDAC4P56524 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
HDAC4P56524 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC20.39■□□□□ 0.85
HDAC4P56524 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC20.39■□□□□ 0.85
HDAC4P56524 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
HDAC4P56524 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
HDAC4P56524 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC20.39■□□□□ 0.85
HDAC4P56524 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC20.39■□□□□ 0.85
HDAC4P56524 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
HDAC4P56524 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
HDAC4P56524 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC20.38■□□□□ 0.85
HDAC4P56524 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC20.38■□□□□ 0.85
HDAC4P56524 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
HDAC4P56524 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC20.38■□□□□ 0.85
HDAC4P56524 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
HDAC4P56524 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
HDAC4P56524 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
HDAC4P56524 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC20.38■□□□□ 0.85
HDAC4P56524 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC20.38■□□□□ 0.85
HDAC4P56524 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
HDAC4P56524 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC20.38■□□□□ 0.85
HDAC4P56524 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC20.38■□□□□ 0.85
HDAC4P56524 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
HDAC4P56524 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC20.38■□□□□ 0.85
HDAC4P56524 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
HDAC4P56524 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC20.38■□□□□ 0.85
HDAC4P56524 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
HDAC4P56524 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC20.37■□□□□ 0.85
HDAC4P56524 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
HDAC4P56524 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC20.37■□□□□ 0.85
HDAC4P56524 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC20.37■□□□□ 0.85
HDAC4P56524 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
HDAC4P56524 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 35.4 ms