Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC18.93■□□□□ 0.62
FOXA1P55317 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
FOXA1P55317 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
FOXA1P55317 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
FOXA1P55317 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC18.92■□□□□ 0.62
FOXA1P55317 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
FOXA1P55317 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
FOXA1P55317 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC18.92■□□□□ 0.62
FOXA1P55317 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC18.92■□□□□ 0.62
FOXA1P55317 NME6-213ENST00000451657 871 ntTSL 2 BASIC18.92■□□□□ 0.62
FOXA1P55317 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC18.92■□□□□ 0.62
FOXA1P55317 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC18.92■□□□□ 0.62
FOXA1P55317 AC005829.2-201ENST00000571422 1056 ntBASIC18.92■□□□□ 0.62
FOXA1P55317 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC18.92■□□□□ 0.62
FOXA1P55317 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC18.92■□□□□ 0.62
FOXA1P55317 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC18.92■□□□□ 0.62
FOXA1P55317 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
FOXA1P55317 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC18.92■□□□□ 0.62
FOXA1P55317 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
FOXA1P55317 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC18.92■□□□□ 0.62
FOXA1P55317 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
FOXA1P55317 CRK-204ENST00000574295 1391 ntTSL 5 BASIC18.92■□□□□ 0.62
FOXA1P55317 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC18.92■□□□□ 0.62
FOXA1P55317 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC18.92■□□□□ 0.62
FOXA1P55317 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC18.92■□□□□ 0.62
FOXA1P55317 AL049812.1-201ENST00000432563 2267 ntBASIC18.91■□□□□ 0.62
FOXA1P55317 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC18.91■□□□□ 0.62
FOXA1P55317 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
FOXA1P55317 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC18.91■□□□□ 0.62
FOXA1P55317 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
FOXA1P55317 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
FOXA1P55317 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
FOXA1P55317 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
FOXA1P55317 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC18.91■□□□□ 0.62
FOXA1P55317 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
FOXA1P55317 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
FOXA1P55317 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC18.91■□□□□ 0.62
FOXA1P55317 DUSP5P2-201ENST00000426873 1033 ntBASIC18.91■□□□□ 0.62
FOXA1P55317 PARL-206ENST00000435888 1098 ntTSL 5 BASIC18.91■□□□□ 0.62
FOXA1P55317 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC18.91■□□□□ 0.62
FOXA1P55317 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC18.91■□□□□ 0.62
FOXA1P55317 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC18.91■□□□□ 0.62
FOXA1P55317 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
FOXA1P55317 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
FOXA1P55317 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
FOXA1P55317 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC18.91■□□□□ 0.62
FOXA1P55317 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
FOXA1P55317 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC18.9■□□□□ 0.62
FOXA1P55317 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
FOXA1P55317 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
FOXA1P55317 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC18.9■□□□□ 0.62
FOXA1P55317 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
FOXA1P55317 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
FOXA1P55317 TEX21P-204ENST00000641479 1693 ntBASIC18.9■□□□□ 0.62
FOXA1P55317 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
FOXA1P55317 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC18.9■□□□□ 0.62
FOXA1P55317 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
FOXA1P55317 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC18.9■□□□□ 0.62
FOXA1P55317 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC18.9■□□□□ 0.62
FOXA1P55317 AC006557.6-201ENST00000623071 864 ntBASIC18.9■□□□□ 0.62
FOXA1P55317 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
FOXA1P55317 AL161938.1-201ENST00000569833 2180 ntBASIC18.9■□□□□ 0.62
FOXA1P55317 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
FOXA1P55317 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
FOXA1P55317 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
FOXA1P55317 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
FOXA1P55317 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
FOXA1P55317 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC18.9■□□□□ 0.62
FOXA1P55317 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC18.9■□□□□ 0.62
FOXA1P55317 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC18.9■□□□□ 0.62
FOXA1P55317 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC18.9■□□□□ 0.62
FOXA1P55317 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
FOXA1P55317 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.62
FOXA1P55317 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC18.89■□□□□ 0.62
FOXA1P55317 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
FOXA1P55317 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC18.89■□□□□ 0.61
FOXA1P55317 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC18.89■□□□□ 0.61
FOXA1P55317 GLI3-203ENST00000437480 451 ntTSL 2 BASIC18.89■□□□□ 0.61
FOXA1P55317 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC18.89■□□□□ 0.61
FOXA1P55317 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC18.89■□□□□ 0.61
FOXA1P55317 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC18.89■□□□□ 0.61
FOXA1P55317 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC18.89■□□□□ 0.61
FOXA1P55317 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
FOXA1P55317 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC18.89■□□□□ 0.61
FOXA1P55317 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
FOXA1P55317 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC18.89■□□□□ 0.61
FOXA1P55317 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
FOXA1P55317 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC18.89■□□□□ 0.61
FOXA1P55317 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC18.89■□□□□ 0.61
FOXA1P55317 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC18.88■□□□□ 0.61
FOXA1P55317 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
FOXA1P55317 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC18.88■□□□□ 0.61
FOXA1P55317 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
FOXA1P55317 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC18.88■□□□□ 0.61
FOXA1P55317 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
FOXA1P55317 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
FOXA1P55317 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC18.88■□□□□ 0.61
FOXA1P55317 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
FOXA1P55317 AC073210.2-201ENST00000430369 194 ntBASIC18.88■□□□□ 0.61
FOXA1P55317 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 26.7 ms