Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
MSX2P35548 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
MSX2P35548 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.58
MSX2P35548 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC18.64■□□□□ 0.58
MSX2P35548 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC18.64■□□□□ 0.58
MSX2P35548 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.58
MSX2P35548 AP001271.2-201ENST00000624018 1556 ntBASIC18.64■□□□□ 0.58
MSX2P35548 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC18.64■□□□□ 0.57
MSX2P35548 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
MSX2P35548 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
MSX2P35548 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
MSX2P35548 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
MSX2P35548 AC110285.6-201ENST00000617652 491 ntBASIC18.64■□□□□ 0.57
MSX2P35548 WAC-202ENST00000347934 2839 ntTSL 5 BASIC18.64■□□□□ 0.57
MSX2P35548 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
MSX2P35548 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC18.64■□□□□ 0.57
MSX2P35548 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
MSX2P35548 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
MSX2P35548 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
MSX2P35548 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC18.64■□□□□ 0.57
MSX2P35548 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
MSX2P35548 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC18.63■□□□□ 0.57
MSX2P35548 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
MSX2P35548 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
MSX2P35548 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
MSX2P35548 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC18.63■□□□□ 0.57
MSX2P35548 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC18.63■□□□□ 0.57
MSX2P35548 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
MSX2P35548 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC18.63■□□□□ 0.57
MSX2P35548 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
MSX2P35548 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
MSX2P35548 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
MSX2P35548 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC18.63■□□□□ 0.57
MSX2P35548 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC18.63■□□□□ 0.57
MSX2P35548 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
MSX2P35548 STOX2-205ENST00000513034 807 ntTSL 3 BASIC18.63■□□□□ 0.57
MSX2P35548 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
MSX2P35548 AC019069.1-201ENST00000610008 1333 ntBASIC18.63■□□□□ 0.57
MSX2P35548 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC18.63■□□□□ 0.57
MSX2P35548 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
MSX2P35548 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
MSX2P35548 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
MSX2P35548 KRT16P6-202ENST00000425692 1426 ntBASIC18.63■□□□□ 0.57
MSX2P35548 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
MSX2P35548 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
MSX2P35548 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
MSX2P35548 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC18.63■□□□□ 0.57
MSX2P35548 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
MSX2P35548 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC18.63■□□□□ 0.57
MSX2P35548 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
MSX2P35548 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
MSX2P35548 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC18.63■□□□□ 0.57
MSX2P35548 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
MSX2P35548 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
MSX2P35548 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
MSX2P35548 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
MSX2P35548 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
MSX2P35548 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
MSX2P35548 AC135050.7-201ENST00000624508 2218 ntBASIC18.62■□□□□ 0.57
MSX2P35548 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
MSX2P35548 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC18.62■□□□□ 0.57
MSX2P35548 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
MSX2P35548 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC18.62■□□□□ 0.57
MSX2P35548 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC18.62■□□□□ 0.57
MSX2P35548 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC18.62■□□□□ 0.57
MSX2P35548 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC18.62■□□□□ 0.57
MSX2P35548 PGM5P4-201ENST00000421970 445 ntBASIC18.62■□□□□ 0.57
MSX2P35548 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
MSX2P35548 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC18.62■□□□□ 0.57
MSX2P35548 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC18.62■□□□□ 0.57
MSX2P35548 AC131212.1-201ENST00000613771 668 ntBASIC18.62■□□□□ 0.57
MSX2P35548 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC18.62■□□□□ 0.57
MSX2P35548 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC18.62■□□□□ 0.57
MSX2P35548 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC18.62■□□□□ 0.57
MSX2P35548 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
MSX2P35548 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
MSX2P35548 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
MSX2P35548 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
MSX2P35548 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC18.62■□□□□ 0.57
MSX2P35548 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
MSX2P35548 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
MSX2P35548 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
MSX2P35548 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC18.61■□□□□ 0.57
MSX2P35548 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC18.61■□□□□ 0.57
MSX2P35548 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
MSX2P35548 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
MSX2P35548 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
MSX2P35548 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
MSX2P35548 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC18.61■□□□□ 0.57
MSX2P35548 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
MSX2P35548 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC18.61■□□□□ 0.57
MSX2P35548 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC18.61■□□□□ 0.57
MSX2P35548 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
MSX2P35548 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
MSX2P35548 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
MSX2P35548 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
MSX2P35548 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
MSX2P35548 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
MSX2P35548 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC18.61■□□□□ 0.57
MSX2P35548 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 49.3 ms