Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC20.53■□□□□ 0.88
COL6A3P12111 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
COL6A3P12111 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC20.53■□□□□ 0.88
COL6A3P12111 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC20.53■□□□□ 0.88
COL6A3P12111 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC20.53■□□□□ 0.88
COL6A3P12111 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC20.53■□□□□ 0.88
COL6A3P12111 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC20.53■□□□□ 0.88
COL6A3P12111 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
COL6A3P12111 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC20.53■□□□□ 0.88
COL6A3P12111 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
COL6A3P12111 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
COL6A3P12111 FAM8A3P-201ENST00000427218 844 ntBASIC20.52■□□□□ 0.88
COL6A3P12111 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC20.52■□□□□ 0.88
COL6A3P12111 CHCHD2P8-201ENST00000429873 447 ntBASIC20.52■□□□□ 0.88
COL6A3P12111 DRAXINP1-201ENST00000437611 948 ntBASIC20.52■□□□□ 0.88
COL6A3P12111 RPL13AP23-201ENST00000480739 586 ntBASIC20.52■□□□□ 0.88
COL6A3P12111 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC20.52■□□□□ 0.88
COL6A3P12111 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC20.52■□□□□ 0.88
COL6A3P12111 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC20.52■□□□□ 0.88
COL6A3P12111 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
COL6A3P12111 KRT16P6-202ENST00000425692 1426 ntBASIC20.52■□□□□ 0.88
COL6A3P12111 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC20.52■□□□□ 0.88
COL6A3P12111 RPSAP43-201ENST00000402237 625 ntBASIC20.52■□□□□ 0.88
COL6A3P12111 C5orf66-202ENST00000507641 547 ntTSL 3 BASIC20.52■□□□□ 0.88
COL6A3P12111 AP000867.3-201ENST00000524675 377 ntBASIC20.52■□□□□ 0.88
COL6A3P12111 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
COL6A3P12111 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC20.52■□□□□ 0.88
COL6A3P12111 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
COL6A3P12111 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC20.52■□□□□ 0.88
COL6A3P12111 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
COL6A3P12111 TLE6-201ENST00000246112 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.87
COL6A3P12111 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
COL6A3P12111 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
COL6A3P12111 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC20.52■□□□□ 0.87
COL6A3P12111 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC20.52■□□□□ 0.87
COL6A3P12111 AL162741.1-201ENST00000565563 1558 ntBASIC20.52■□□□□ 0.87
COL6A3P12111 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC20.52■□□□□ 0.87
COL6A3P12111 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
COL6A3P12111 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
COL6A3P12111 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC20.51■□□□□ 0.87
COL6A3P12111 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
COL6A3P12111 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
COL6A3P12111 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
COL6A3P12111 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
COL6A3P12111 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
COL6A3P12111 AC064862.7-201ENST00000604520 867 ntBASIC20.51■□□□□ 0.87
COL6A3P12111 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
COL6A3P12111 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
COL6A3P12111 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
COL6A3P12111 PRR29-209ENST00000582540 967 ntTSL 2 BASIC20.5■□□□□ 0.87
COL6A3P12111 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
COL6A3P12111 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
COL6A3P12111 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC20.5■□□□□ 0.87
COL6A3P12111 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC20.5■□□□□ 0.87
COL6A3P12111 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC20.5■□□□□ 0.87
COL6A3P12111 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC20.5■□□□□ 0.87
COL6A3P12111 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
COL6A3P12111 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC20.5■□□□□ 0.87
COL6A3P12111 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
COL6A3P12111 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
COL6A3P12111 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
COL6A3P12111 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC20.5■□□□□ 0.87
COL6A3P12111 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC20.5■□□□□ 0.87
COL6A3P12111 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
COL6A3P12111 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
COL6A3P12111 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
COL6A3P12111 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC20.49■□□□□ 0.87
COL6A3P12111 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC20.49■□□□□ 0.87
COL6A3P12111 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
COL6A3P12111 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC20.49■□□□□ 0.87
COL6A3P12111 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC20.49■□□□□ 0.87
COL6A3P12111 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
COL6A3P12111 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC20.49■□□□□ 0.87
COL6A3P12111 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC20.49■□□□□ 0.87
COL6A3P12111 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC20.49■□□□□ 0.87
COL6A3P12111 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC20.49■□□□□ 0.87
COL6A3P12111 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC20.49■□□□□ 0.87
COL6A3P12111 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
COL6A3P12111 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC20.49■□□□□ 0.87
COL6A3P12111 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
COL6A3P12111 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
COL6A3P12111 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
COL6A3P12111 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
COL6A3P12111 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
COL6A3P12111 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
COL6A3P12111 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
COL6A3P12111 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC20.48■□□□□ 0.87
COL6A3P12111 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC20.48■□□□□ 0.87
COL6A3P12111 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
COL6A3P12111 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
COL6A3P12111 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
COL6A3P12111 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
COL6A3P12111 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
COL6A3P12111 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
COL6A3P12111 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC20.48■□□□□ 0.87
COL6A3P12111 CA15P1-201ENST00000481698 905 ntBASIC20.48■□□□□ 0.87
COL6A3P12111 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC20.48■□□□□ 0.87
COL6A3P12111 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC20.48■□□□□ 0.87
COL6A3P12111 RPS15-207ENST00000591032 550 ntTSL 3 BASIC20.48■□□□□ 0.87
COL6A3P12111 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 23.9 ms