Protein–RNA interactions for Protein: P08572

COL4A2, Collagen alpha-2(IV) chain, humanhuman

Predictions only

Length 1,712 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A2P08572 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
COL4A2P08572 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC19.81■□□□□ 0.76
COL4A2P08572 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
COL4A2P08572 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC19.81■□□□□ 0.76
COL4A2P08572 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
COL4A2P08572 HCG4P8-203ENST00000443049 980 ntBASIC19.81■□□□□ 0.76
COL4A2P08572 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC19.81■□□□□ 0.76
COL4A2P08572 ETFA-216ENST00000560726 942 ntTSL 3 BASIC19.81■□□□□ 0.76
COL4A2P08572 CKBP1-201ENST00000565489 1086 ntBASIC19.81■□□□□ 0.76
COL4A2P08572 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC19.81■□□□□ 0.76
COL4A2P08572 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC19.81■□□□□ 0.76
COL4A2P08572 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
COL4A2P08572 IER3-202ENST00000376377 1350 ntBASIC19.81■□□□□ 0.76
COL4A2P08572 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC19.81■□□□□ 0.76
COL4A2P08572 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
COL4A2P08572 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC19.8■□□□□ 0.76
COL4A2P08572 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC19.8■□□□□ 0.76
COL4A2P08572 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
COL4A2P08572 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC19.8■□□□□ 0.76
COL4A2P08572 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC19.8■□□□□ 0.76
COL4A2P08572 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC19.8■□□□□ 0.76
COL4A2P08572 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
COL4A2P08572 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC19.8■□□□□ 0.76
COL4A2P08572 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
COL4A2P08572 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC19.8■□□□□ 0.76
COL4A2P08572 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
COL4A2P08572 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
COL4A2P08572 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
COL4A2P08572 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
COL4A2P08572 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC19.79■□□□□ 0.76
COL4A2P08572 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC19.79■□□□□ 0.76
COL4A2P08572 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC19.79■□□□□ 0.76
COL4A2P08572 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC19.79■□□□□ 0.76
COL4A2P08572 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC19.79■□□□□ 0.76
COL4A2P08572 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC19.79■□□□□ 0.76
COL4A2P08572 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
COL4A2P08572 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
COL4A2P08572 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
COL4A2P08572 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
COL4A2P08572 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC19.79■□□□□ 0.76
COL4A2P08572 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
COL4A2P08572 LINC01465-201ENST00000408887 1940 ntBASIC19.79■□□□□ 0.76
COL4A2P08572 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC19.79■□□□□ 0.76
COL4A2P08572 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
COL4A2P08572 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC19.79■□□□□ 0.76
COL4A2P08572 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC19.79■□□□□ 0.76
COL4A2P08572 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
COL4A2P08572 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
COL4A2P08572 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
COL4A2P08572 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC19.79■□□□□ 0.76
COL4A2P08572 NME1-207ENST00000480143 964 ntTSL 2 BASIC19.79■□□□□ 0.76
COL4A2P08572 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC19.79■□□□□ 0.76
COL4A2P08572 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC19.79■□□□□ 0.76
COL4A2P08572 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC19.79■□□□□ 0.76
COL4A2P08572 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
COL4A2P08572 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
COL4A2P08572 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC19.78■□□□□ 0.76
COL4A2P08572 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC19.78■□□□□ 0.76
COL4A2P08572 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC19.78■□□□□ 0.76
COL4A2P08572 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
COL4A2P08572 DAP-202ENST00000432074 1048 ntTSL 2 BASIC19.78■□□□□ 0.76
COL4A2P08572 SPDYE13P-201ENST00000445314 798 ntBASIC19.78■□□□□ 0.76
COL4A2P08572 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
COL4A2P08572 NT5C-210ENST00000582160 860 ntTSL 2 BASIC19.78■□□□□ 0.76
COL4A2P08572 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC19.78■□□□□ 0.76
COL4A2P08572 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC19.78■□□□□ 0.76
COL4A2P08572 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
COL4A2P08572 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC19.78■□□□□ 0.76
COL4A2P08572 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC19.78■□□□□ 0.76
COL4A2P08572 CD37-204ENST00000535669 1674 ntTSL 2 BASIC19.78■□□□□ 0.76
COL4A2P08572 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
COL4A2P08572 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC19.77■□□□□ 0.76
COL4A2P08572 AC026310.3-201ENST00000625186 2373 ntBASIC19.77■□□□□ 0.76
COL4A2P08572 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
COL4A2P08572 SPDYE15P-201ENST00000424157 909 ntBASIC19.77■□□□□ 0.76
COL4A2P08572 HOMER2P1-201ENST00000455653 964 ntBASIC19.77■□□□□ 0.76
COL4A2P08572 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC19.77■□□□□ 0.76
COL4A2P08572 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
COL4A2P08572 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC19.77■□□□□ 0.76
COL4A2P08572 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.76
COL4A2P08572 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC19.77■□□□□ 0.76
COL4A2P08572 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
COL4A2P08572 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
COL4A2P08572 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC19.77■□□□□ 0.76
COL4A2P08572 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.76
COL4A2P08572 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
COL4A2P08572 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC19.76■□□□□ 0.75
COL4A2P08572 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC19.76■□□□□ 0.75
COL4A2P08572 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
COL4A2P08572 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC19.76■□□□□ 0.75
COL4A2P08572 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
COL4A2P08572 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
COL4A2P08572 KRT8P45-201ENST00000414328 1447 ntBASIC19.76■□□□□ 0.75
COL4A2P08572 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
COL4A2P08572 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
COL4A2P08572 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
COL4A2P08572 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC19.76■□□□□ 0.75
COL4A2P08572 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
COL4A2P08572 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
COL4A2P08572 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC19.76■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 51.7 ms