Protein–RNA interactions for Protein: P04114

APOB, Apolipoprotein B-100, humanhuman

Known RBP Predictions only

Length 4,563 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOBP04114 AC140113.3-201ENST00000605663 199 ntBASIC12.25□□□□□ -0.45
APOBP04114 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
APOBP04114 LINC01311-201ENST00000565162 1445 ntBASIC12.25□□□□□ -0.45
APOBP04114 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC12.25□□□□□ -0.45
APOBP04114 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC12.25□□□□□ -0.45
APOBP04114 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC12.25□□□□□ -0.45
APOBP04114 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
APOBP04114 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC12.25□□□□□ -0.45
APOBP04114 TSPY12P-201ENST00000421279 868 ntBASIC12.25□□□□□ -0.45
APOBP04114 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC12.25□□□□□ -0.45
APOBP04114 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
APOBP04114 PARN-205ENST00000539279 1557 ntTSL 2 BASIC12.25□□□□□ -0.45
APOBP04114 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC12.25□□□□□ -0.45
APOBP04114 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC12.25□□□□□ -0.45
APOBP04114 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
APOBP04114 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
APOBP04114 TUBB8P6-201ENST00000436895 1288 ntBASIC12.25□□□□□ -0.45
APOBP04114 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
APOBP04114 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC12.24□□□□□ -0.45
APOBP04114 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
APOBP04114 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
APOBP04114 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
APOBP04114 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC12.24□□□□□ -0.45
APOBP04114 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
APOBP04114 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC12.24□□□□□ -0.45
APOBP04114 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC12.24□□□□□ -0.45
APOBP04114 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC12.24□□□□□ -0.45
APOBP04114 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
APOBP04114 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC12.24□□□□□ -0.45
APOBP04114 STARP1-201ENST00000397973 869 ntBASIC12.24□□□□□ -0.45
APOBP04114 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC12.24□□□□□ -0.45
APOBP04114 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC12.24□□□□□ -0.45
APOBP04114 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC12.24□□□□□ -0.45
APOBP04114 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC12.24□□□□□ -0.45
APOBP04114 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC12.24□□□□□ -0.45
APOBP04114 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
APOBP04114 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC12.24□□□□□ -0.45
APOBP04114 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC12.24□□□□□ -0.45
APOBP04114 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
APOBP04114 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
APOBP04114 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
APOBP04114 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC12.24□□□□□ -0.45
APOBP04114 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC12.24□□□□□ -0.45
APOBP04114 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC12.24□□□□□ -0.45
APOBP04114 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC12.24□□□□□ -0.45
APOBP04114 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
APOBP04114 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
APOBP04114 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
APOBP04114 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC12.23□□□□□ -0.45
APOBP04114 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC12.23□□□□□ -0.45
APOBP04114 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
APOBP04114 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
APOBP04114 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
APOBP04114 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC12.23□□□□□ -0.45
APOBP04114 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
APOBP04114 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC12.23□□□□□ -0.45
APOBP04114 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC12.23□□□□□ -0.45
APOBP04114 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC12.23□□□□□ -0.45
APOBP04114 TBC1D3P2-202ENST00000577902 1649 ntBASIC12.23□□□□□ -0.45
APOBP04114 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC12.23□□□□□ -0.45
APOBP04114 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
APOBP04114 AC106795.1-205ENST00000512851 1056 ntBASIC12.23□□□□□ -0.45
APOBP04114 AP005901.3-202ENST00000581653 237 ntBASIC12.23□□□□□ -0.45
APOBP04114 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
APOBP04114 KRT18P1-202ENST00000452408 1331 ntBASIC12.23□□□□□ -0.45
APOBP04114 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC12.23□□□□□ -0.45
APOBP04114 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
APOBP04114 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
APOBP04114 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
APOBP04114 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC12.23□□□□□ -0.45
APOBP04114 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
APOBP04114 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC12.23□□□□□ -0.45
APOBP04114 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC12.23□□□□□ -0.45
APOBP04114 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
APOBP04114 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
APOBP04114 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC12.22□□□□□ -0.45
APOBP04114 IL11-204ENST00000590625 1028 ntTSL 2 BASIC12.22□□□□□ -0.45
APOBP04114 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC12.22□□□□□ -0.45
APOBP04114 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC12.22□□□□□ -0.45
APOBP04114 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
APOBP04114 TSPY19P-201ENST00000418461 509 ntBASIC12.22□□□□□ -0.45
APOBP04114 TSPY18P-201ENST00000441642 509 ntBASIC12.22□□□□□ -0.45
APOBP04114 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC12.22□□□□□ -0.45
APOBP04114 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
APOBP04114 TBCB-205ENST00000585746 875 ntTSL 3 BASIC12.22□□□□□ -0.45
APOBP04114 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC12.22□□□□□ -0.45
APOBP04114 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC12.22□□□□□ -0.45
APOBP04114 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
APOBP04114 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC12.22□□□□□ -0.45
APOBP04114 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
APOBP04114 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC12.22□□□□□ -0.45
APOBP04114 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
APOBP04114 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
APOBP04114 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
APOBP04114 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
APOBP04114 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC12.21□□□□□ -0.45
APOBP04114 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC12.21□□□□□ -0.45
APOBP04114 PRELID1P1-202ENST00000567272 903 ntBASIC12.21□□□□□ -0.45
APOBP04114 NT5C-210ENST00000582160 860 ntTSL 2 BASIC12.21□□□□□ -0.45
APOBP04114 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
Retrieved 100 of 98,524 protein–RNA pairs in 21.7 ms