Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC20.01■□□□□ 0.79
CBX4O00257 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CBX4O00257 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC20■□□□□ 0.79
CBX4O00257 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC20■□□□□ 0.79
CBX4O00257 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC20■□□□□ 0.79
CBX4O00257 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC20■□□□□ 0.79
CBX4O00257 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CBX4O00257 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CBX4O00257 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC20■□□□□ 0.79
CBX4O00257 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC20■□□□□ 0.79
CBX4O00257 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC20■□□□□ 0.79
CBX4O00257 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CBX4O00257 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CBX4O00257 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC20■□□□□ 0.79
CBX4O00257 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC20■□□□□ 0.79
CBX4O00257 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC20■□□□□ 0.79
CBX4O00257 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC20■□□□□ 0.79
CBX4O00257 AC012618.2-201ENST00000428058 849 ntBASIC20■□□□□ 0.79
CBX4O00257 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC20■□□□□ 0.79
CBX4O00257 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC20■□□□□ 0.79
CBX4O00257 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC20■□□□□ 0.79
CBX4O00257 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC20■□□□□ 0.79
CBX4O00257 REXO2-216ENST00000544196 452 ntTSL 3 BASIC20■□□□□ 0.79
CBX4O00257 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CBX4O00257 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC20■□□□□ 0.79
CBX4O00257 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC20■□□□□ 0.79
CBX4O00257 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CBX4O00257 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
CBX4O00257 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CBX4O00257 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC20■□□□□ 0.79
CBX4O00257 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC20■□□□□ 0.79
CBX4O00257 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CBX4O00257 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC20■□□□□ 0.79
CBX4O00257 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC20■□□□□ 0.79
CBX4O00257 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC19.99■□□□□ 0.79
CBX4O00257 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC19.99■□□□□ 0.79
CBX4O00257 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC19.99■□□□□ 0.79
CBX4O00257 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC19.99■□□□□ 0.79
CBX4O00257 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC19.99■□□□□ 0.79
CBX4O00257 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC19.99■□□□□ 0.79
CBX4O00257 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC19.99■□□□□ 0.79
CBX4O00257 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC19.99■□□□□ 0.79
CBX4O00257 MDFI-202ENST00000373050 809 ntTSL 2 BASIC19.99■□□□□ 0.79
CBX4O00257 AF186192.3-201ENST00000583427 947 ntBASIC19.99■□□□□ 0.79
CBX4O00257 AC233702.5-201ENST00000584107 538 ntBASIC19.99■□□□□ 0.79
CBX4O00257 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC19.99■□□□□ 0.79
CBX4O00257 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC19.99■□□□□ 0.79
CBX4O00257 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
CBX4O00257 REXO1L12P-201ENST00000622156 912 ntBASIC19.99■□□□□ 0.79
CBX4O00257 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC19.99■□□□□ 0.79
CBX4O00257 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CBX4O00257 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC19.99■□□□□ 0.79
CBX4O00257 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CBX4O00257 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
CBX4O00257 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
CBX4O00257 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CBX4O00257 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CBX4O00257 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CBX4O00257 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
CBX4O00257 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC19.98■□□□□ 0.79
CBX4O00257 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC19.98■□□□□ 0.79
CBX4O00257 ME2-218ENST00000640965 2476 ntTSL 5 BASIC19.98■□□□□ 0.79
CBX4O00257 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
CBX4O00257 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CBX4O00257 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
CBX4O00257 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CBX4O00257 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
CBX4O00257 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC19.98■□□□□ 0.79
CBX4O00257 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CBX4O00257 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC19.98■□□□□ 0.79
CBX4O00257 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
CBX4O00257 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC19.98■□□□□ 0.79
CBX4O00257 AP002982.1-201ENST00000492365 877 ntBASIC19.98■□□□□ 0.79
CBX4O00257 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
CBX4O00257 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC19.98■□□□□ 0.79
CBX4O00257 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC19.98■□□□□ 0.79
CBX4O00257 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
CBX4O00257 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CBX4O00257 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CBX4O00257 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CBX4O00257 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC19.98■□□□□ 0.79
CBX4O00257 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC19.98■□□□□ 0.79
CBX4O00257 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC19.98■□□□□ 0.79
CBX4O00257 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC19.98■□□□□ 0.79
CBX4O00257 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC19.98■□□□□ 0.79
CBX4O00257 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CBX4O00257 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC19.97■□□□□ 0.79
CBX4O00257 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC19.97■□□□□ 0.79
CBX4O00257 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
CBX4O00257 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
CBX4O00257 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC19.97■□□□□ 0.79
CBX4O00257 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC19.97■□□□□ 0.79
CBX4O00257 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CBX4O00257 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
CBX4O00257 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CBX4O00257 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
CBX4O00257 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC19.97■□□□□ 0.79
CBX4O00257 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CBX4O00257 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC19.97■□□□□ 0.79
CBX4O00257 AL353807.1-201ENST00000427475 662 ntBASIC19.97■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 31.1 ms