Protein–RNA interactions for Protein: A0A0B4J280

TRAV40, T-cell receptor alpha variable 40 (Fragment), humanhuman

Predictions only

Length 105 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV40A0A0B4J280 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
TRAV40A0A0B4J280 MIR6786-201ENST00000616843 113 ntBASIC15.93■□□□□ 0.14
TRAV40A0A0B4J280 AC097493.4-201ENST00000641197 219 ntBASIC15.93■□□□□ 0.14
TRAV40A0A0B4J280 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
TRAV40A0A0B4J280 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC15.93■□□□□ 0.14
TRAV40A0A0B4J280 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
TRAV40A0A0B4J280 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC15.93■□□□□ 0.14
TRAV40A0A0B4J280 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
TRAV40A0A0B4J280 GOLGA2P11-201ENST00000562660 1621 ntBASIC15.93■□□□□ 0.14
TRAV40A0A0B4J280 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC15.93■□□□□ 0.14
TRAV40A0A0B4J280 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
TRAV40A0A0B4J280 AP005212.1-201ENST00000581547 1997 ntBASIC15.93■□□□□ 0.14
TRAV40A0A0B4J280 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC15.93■□□□□ 0.14
TRAV40A0A0B4J280 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC15.93■□□□□ 0.14
TRAV40A0A0B4J280 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
TRAV40A0A0B4J280 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
TRAV40A0A0B4J280 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
TRAV40A0A0B4J280 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
TRAV40A0A0B4J280 AP001271.2-201ENST00000624018 1556 ntBASIC15.92■□□□□ 0.14
TRAV40A0A0B4J280 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC15.92■□□□□ 0.14
TRAV40A0A0B4J280 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
TRAV40A0A0B4J280 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC15.92■□□□□ 0.14
TRAV40A0A0B4J280 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC15.92■□□□□ 0.14
TRAV40A0A0B4J280 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
TRAV40A0A0B4J280 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
TRAV40A0A0B4J280 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC15.92■□□□□ 0.14
TRAV40A0A0B4J280 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC15.92■□□□□ 0.14
TRAV40A0A0B4J280 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC15.92■□□□□ 0.14
TRAV40A0A0B4J280 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC15.92■□□□□ 0.14
TRAV40A0A0B4J280 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
TRAV40A0A0B4J280 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC15.92■□□□□ 0.14
TRAV40A0A0B4J280 PPP1R14BP5-201ENST00000440334 435 ntBASIC15.92■□□□□ 0.14
TRAV40A0A0B4J280 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
TRAV40A0A0B4J280 AC116562.2-201ENST00000507042 360 ntBASIC15.92■□□□□ 0.14
TRAV40A0A0B4J280 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC15.92■□□□□ 0.14
TRAV40A0A0B4J280 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
TRAV40A0A0B4J280 PPOX-219ENST00000544598 813 ntTSL 2 BASIC15.92■□□□□ 0.14
TRAV40A0A0B4J280 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC15.92■□□□□ 0.14
TRAV40A0A0B4J280 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
TRAV40A0A0B4J280 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC15.92■□□□□ 0.14
TRAV40A0A0B4J280 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC15.92■□□□□ 0.14
TRAV40A0A0B4J280 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
TRAV40A0A0B4J280 TMEM179-206ENST00000616017 1645 ntBASIC15.92■□□□□ 0.14
TRAV40A0A0B4J280 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
TRAV40A0A0B4J280 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC15.92■□□□□ 0.14
TRAV40A0A0B4J280 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
TRAV40A0A0B4J280 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
TRAV40A0A0B4J280 AL512408.1-201ENST00000569378 2000 ntBASIC15.92■□□□□ 0.14
TRAV40A0A0B4J280 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC15.92■□□□□ 0.14
TRAV40A0A0B4J280 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
TRAV40A0A0B4J280 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
TRAV40A0A0B4J280 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC15.92■□□□□ 0.14
TRAV40A0A0B4J280 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
TRAV40A0A0B4J280 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
TRAV40A0A0B4J280 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
TRAV40A0A0B4J280 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
TRAV40A0A0B4J280 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC15.91■□□□□ 0.14
TRAV40A0A0B4J280 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
TRAV40A0A0B4J280 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
TRAV40A0A0B4J280 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
TRAV40A0A0B4J280 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC15.91■□□□□ 0.14
TRAV40A0A0B4J280 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
TRAV40A0A0B4J280 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
TRAV40A0A0B4J280 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC15.91■□□□□ 0.14
TRAV40A0A0B4J280 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC15.91■□□□□ 0.14
TRAV40A0A0B4J280 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC15.91■□□□□ 0.14
TRAV40A0A0B4J280 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
TRAV40A0A0B4J280 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC15.91■□□□□ 0.14
TRAV40A0A0B4J280 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC15.91■□□□□ 0.14
TRAV40A0A0B4J280 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC15.91■□□□□ 0.14
TRAV40A0A0B4J280 ABBA01031674.1-201ENST00000635145 728 ntBASIC15.91■□□□□ 0.14
TRAV40A0A0B4J280 GLDC-219ENST00000640208 420 ntTSL 2 BASIC15.91■□□□□ 0.14
TRAV40A0A0B4J280 KRT8P9-201ENST00000558927 1449 ntBASIC15.91■□□□□ 0.14
TRAV40A0A0B4J280 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
TRAV40A0A0B4J280 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
TRAV40A0A0B4J280 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
TRAV40A0A0B4J280 FSCN1P1-201ENST00000568912 1481 ntBASIC15.91■□□□□ 0.14
TRAV40A0A0B4J280 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
TRAV40A0A0B4J280 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC15.9■□□□□ 0.14
TRAV40A0A0B4J280 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
TRAV40A0A0B4J280 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
TRAV40A0A0B4J280 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
TRAV40A0A0B4J280 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
TRAV40A0A0B4J280 AL391422.3-201ENST00000603791 2761 ntBASIC15.9■□□□□ 0.14
TRAV40A0A0B4J280 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
TRAV40A0A0B4J280 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
TRAV40A0A0B4J280 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC15.9■□□□□ 0.14
TRAV40A0A0B4J280 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC15.9■□□□□ 0.14
TRAV40A0A0B4J280 AC012306.2-201ENST00000609350 630 ntBASIC15.9■□□□□ 0.14
TRAV40A0A0B4J280 AC131212.4-201ENST00000623606 975 ntBASIC15.9■□□□□ 0.14
TRAV40A0A0B4J280 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC15.9■□□□□ 0.14
TRAV40A0A0B4J280 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
TRAV40A0A0B4J280 AC073130.3-201ENST00000624389 2278 ntBASIC15.9■□□□□ 0.14
TRAV40A0A0B4J280 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC15.9■□□□□ 0.14
TRAV40A0A0B4J280 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC15.9■□□□□ 0.14
TRAV40A0A0B4J280 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC15.9■□□□□ 0.14
TRAV40A0A0B4J280 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
TRAV40A0A0B4J280 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC15.9■□□□□ 0.14
TRAV40A0A0B4J280 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
TRAV40A0A0B4J280 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 52.4 ms