Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 MTND3P1-201ENST00000441336 220 ntBASIC6.21□□□□□ -1.42
TRIM39Q9HCM9 AC118469.1-201ENST00000442943 488 ntBASIC6.21□□□□□ -1.42
TRIM39Q9HCM9 HMGB1P16-201ENST00000447155 540 ntBASIC6.21□□□□□ -1.42
TRIM39Q9HCM9 AL935212.3-201ENST00000450729 284 ntBASIC6.21□□□□□ -1.42
TRIM39Q9HCM9 HMGB1P7-201ENST00000450921 612 ntBASIC6.21□□□□□ -1.42
TRIM39Q9HCM9 SNRPG-206ENST00000454893 527 ntTSL 3 BASIC6.21□□□□□ -1.42
TRIM39Q9HCM9 RN7SL254P-201ENST00000460609 284 ntBASIC6.21□□□□□ -1.42
TRIM39Q9HCM9 BZW1P2-201ENST00000473537 826 ntBASIC6.21□□□□□ -1.42
TRIM39Q9HCM9 GAPDHP36-201ENST00000480688 918 ntBASIC6.21□□□□□ -1.42
TRIM39Q9HCM9 AC091544.1-201ENST00000484702 348 ntBASIC6.21□□□□□ -1.42
TRIM39Q9HCM9 AC073358.1-201ENST00000505671 684 ntBASIC6.21□□□□□ -1.42
TRIM39Q9HCM9 AC116353.3-201ENST00000511215 249 ntBASIC6.21□□□□□ -1.42
TRIM39Q9HCM9 LINC02500-201ENST00000512547 493 ntTSL 3 BASIC6.21□□□□□ -1.42
TRIM39Q9HCM9 Y_RNA.655-201ENST00000515919 96 ntBASIC6.21□□□□□ -1.42
TRIM39Q9HCM9 AC091979.1-201ENST00000517595 706 ntTSL 2 BASIC6.21□□□□□ -1.42
TRIM39Q9HCM9 IGHVIII-47-1-201ENST00000518187 331 ntBASIC6.21□□□□□ -1.42
TRIM39Q9HCM9 LRTOMT-218ENST00000541614 726 ntTSL 1 (best) BASIC6.21□□□□□ -1.42
TRIM39Q9HCM9 LYZ-203ENST00000549690 669 ntTSL 2 BASIC6.21□□□□□ -1.42
TRIM39Q9HCM9 AC016526.2-201ENST00000554225 520 ntTSL 3 BASIC6.21□□□□□ -1.42
TRIM39Q9HCM9 GNG2-208ENST00000554875 430 ntTSL 5 BASIC6.21□□□□□ -1.42
TRIM39Q9HCM9 OR11H2-201ENST00000556246 948 ntAPPRIS P1 BASIC6.21□□□□□ -1.42
TRIM39Q9HCM9 CASC16-202ENST00000563844 610 ntTSL 3 BASIC6.21□□□□□ -1.42
TRIM39Q9HCM9 AC090312.2-201ENST00000582687 378 ntBASIC6.21□□□□□ -1.42
TRIM39Q9HCM9 AP005057.1-201ENST00000583827 574 ntTSL 4 BASIC6.21□□□□□ -1.42
TRIM39Q9HCM9 AC090616.2-202ENST00000584248 222 ntBASIC6.21□□□□□ -1.42
TRIM39Q9HCM9 APOC2-205ENST00000592257 444 ntTSL 3 BASIC6.21□□□□□ -1.42
TRIM39Q9HCM9 ZNF418-210ENST00000600989 597 ntTSL 5 BASIC6.21□□□□□ -1.42
TRIM39Q9HCM9 VN1R82P-201ENST00000601481 356 ntBASIC6.21□□□□□ -1.42
TRIM39Q9HCM9 LINC01320-205ENST00000604250 857 ntTSL 5 BASIC6.21□□□□□ -1.42
TRIM39Q9HCM9 LAPTM4BP2-201ENST00000604542 446 ntBASIC6.21□□□□□ -1.42
TRIM39Q9HCM9 AC091193.1-201ENST00000604640 448 ntBASIC6.21□□□□□ -1.42
TRIM39Q9HCM9 AL163642.2-201ENST00000604722 1019 ntBASIC6.21□□□□□ -1.42
TRIM39Q9HCM9 AC006924.1-201ENST00000610750 559 ntBASIC6.21□□□□□ -1.42
TRIM39Q9HCM9 AL138960.1-201ENST00000613838 513 ntBASIC6.21□□□□□ -1.42
TRIM39Q9HCM9 U1.31-201ENST00000620022 160 ntBASIC6.21□□□□□ -1.42
TRIM39Q9HCM9 AC009120.7-201ENST00000623452 780 ntBASIC6.21□□□□□ -1.42
TRIM39Q9HCM9 AC098679.4-201ENST00000624241 654 ntBASIC6.21□□□□□ -1.42
TRIM39Q9HCM9 AC092608.3-201ENST00000625017 386 ntBASIC6.21□□□□□ -1.42
TRIM39Q9HCM9 AC245088.3-201ENST00000634383 424 ntAPPRIS P1 BASIC6.21□□□□□ -1.42
TRIM39Q9HCM9 AC134980.1-211ENST00000638243 1094 ntTSL 2 BASIC6.21□□□□□ -1.42
TRIM39Q9HCM9 CUL4B-204ENST00000404115 3264 ntTSL 1 (best) BASIC6.21□□□□□ -1.42
TRIM39Q9HCM9 SLC35A5-201ENST00000261034 2444 ntTSL 5 BASIC6.21□□□□□ -1.42
TRIM39Q9HCM9 ADGRL2-202ENST00000359929 4674 ntAPPRIS P2 TSL 1 (best) BASIC6.21□□□□□ -1.42
TRIM39Q9HCM9 AJ009632.2-208ENST00000635525 4123 ntTSL 5 BASIC6.21□□□□□ -1.42
TRIM39Q9HCM9 STAG2-202ENST00000371144 4281 ntAPPRIS P3 TSL 1 (best) BASIC6.21□□□□□ -1.42
TRIM39Q9HCM9 AC005539.1-201ENST00000443768 1479 ntBASIC6.21□□□□□ -1.42
TRIM39Q9HCM9 GLYATL1-201ENST00000300079 2068 ntAPPRIS P3 TSL 2 BASIC6.21□□□□□ -1.42
TRIM39Q9HCM9 SLC12A6-204ENST00000397707 4194 ntTSL 1 (best) BASIC6.21□□□□□ -1.42
TRIM39Q9HCM9 DNM1P47-202ENST00000561463 15043 ntTSL 5 BASIC6.2□□□□□ -1.42
TRIM39Q9HCM9 ZNF644-204ENST00000370440 5702 ntAPPRIS P1 TSL 5 BASIC6.2□□□□□ -1.42
TRIM39Q9HCM9 FGF1-216ENST00000621536 4062 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
TRIM39Q9HCM9 ZNF484-202ENST00000375495 2867 ntAPPRIS P3 TSL 1 (best) BASIC6.2□□□□□ -1.42
TRIM39Q9HCM9 SLCO1C1-208ENST00000545102 2868 ntTSL 2 BASIC6.2□□□□□ -1.42
TRIM39Q9HCM9 IQCH-214ENST00000629425 1822 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
TRIM39Q9HCM9 OR5B12-202ENST00000641921 1807 ntAPPRIS P1 BASIC6.2□□□□□ -1.42
TRIM39Q9HCM9 LINC00690-201ENST00000429949 1365 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
TRIM39Q9HCM9 RGSL1-201ENST00000294854 3696 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
TRIM39Q9HCM9 KIF20A-205ENST00000508792 2935 ntTSL 2 BASIC6.2□□□□□ -1.42
TRIM39Q9HCM9 MCM3AP-AS1-204ENST00000432735 2302 ntTSL 2 BASIC6.2□□□□□ -1.42
TRIM39Q9HCM9 ZC3H14-205ENST00000393514 2195 ntTSL 5 BASIC6.2□□□□□ -1.42
TRIM39Q9HCM9 OR4N5-202ENST00000641086 2187 ntAPPRIS P1 BASIC6.2□□□□□ -1.42
TRIM39Q9HCM9 AC046144.1-201ENST00000478559 1853 ntBASIC6.2□□□□□ -1.42
TRIM39Q9HCM9 SETX-201ENST00000224140 11100 ntAPPRIS P2 TSL 1 (best) BASIC6.2□□□□□ -1.42
TRIM39Q9HCM9 ZNF24-201ENST00000261332 6307 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
TRIM39Q9HCM9 HHLA2-206ENST00000467761 2379 ntAPPRIS P3 TSL 5 BASIC6.2□□□□□ -1.42
TRIM39Q9HCM9 AC106872.5-201ENST00000508856 1416 ntBASIC6.2□□□□□ -1.42
TRIM39Q9HCM9 ADAM18-206ENST00000520772 1429 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
TRIM39Q9HCM9 OR51I2-202ENST00000641930 3302 ntAPPRIS P1 BASIC6.2□□□□□ -1.42
TRIM39Q9HCM9 AC009804.2-201ENST00000637566 3032 ntTSL 5 BASIC6.2□□□□□ -1.42
TRIM39Q9HCM9 DNAJC12-201ENST00000225171 1201 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
TRIM39Q9HCM9 HMGB1P5-201ENST00000255320 642 ntBASIC6.2□□□□□ -1.42
TRIM39Q9HCM9 OR1D2-201ENST00000331459 939 ntAPPRIS P1 BASIC6.2□□□□□ -1.42
TRIM39Q9HCM9 RNA5SP346-201ENST00000363541 121 ntBASIC6.2□□□□□ -1.42
TRIM39Q9HCM9 RNU6-304P-201ENST00000364855 107 ntBASIC6.2□□□□□ -1.42
TRIM39Q9HCM9 ADPRM-201ENST00000379774 1209 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
TRIM39Q9HCM9 TRAV8-4-201ENST00000390438 469 ntAPPRIS P1 BASIC6.2□□□□□ -1.42
TRIM39Q9HCM9 ATP5F1P3-201ENST00000397213 657 ntBASIC6.2□□□□□ -1.42
TRIM39Q9HCM9 TMSB4XP8-201ENST00000402089 135 ntBASIC6.2□□□□□ -1.42
TRIM39Q9HCM9 AL451046.1-201ENST00000406097 534 ntBASIC6.2□□□□□ -1.42
TRIM39Q9HCM9 SETP15-201ENST00000412724 337 ntBASIC6.2□□□□□ -1.42
TRIM39Q9HCM9 AC064871.1-202ENST00000413954 382 ntTSL 5 BASIC6.2□□□□□ -1.42
TRIM39Q9HCM9 RBMS3-AS1-201ENST00000414547 554 ntTSL 4 BASIC6.2□□□□□ -1.42
TRIM39Q9HCM9 TMSB4XP6-201ENST00000415187 135 ntBASIC6.2□□□□□ -1.42
TRIM39Q9HCM9 EFCAB14-AS1-201ENST00000418985 491 ntTSL 3 BASIC6.2□□□□□ -1.42
TRIM39Q9HCM9 PAICSP7-201ENST00000419829 962 ntBASIC6.2□□□□□ -1.42
TRIM39Q9HCM9 CYP4F30P-202ENST00000420048 405 ntBASIC6.2□□□□□ -1.42
TRIM39Q9HCM9 TMSB4XP1-201ENST00000424567 135 ntBASIC6.2□□□□□ -1.42
TRIM39Q9HCM9 PLA2G12AP2-201ENST00000424744 264 ntBASIC6.2□□□□□ -1.42
TRIM39Q9HCM9 DPRXP1-201ENST00000426312 460 ntBASIC6.2□□□□□ -1.42
TRIM39Q9HCM9 LCE6A-201ENST00000431011 628 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
TRIM39Q9HCM9 LINC02522-201ENST00000431401 256 ntTSL 3 BASIC6.2□□□□□ -1.42
TRIM39Q9HCM9 RPL21P110-201ENST00000433345 446 ntBASIC6.2□□□□□ -1.42
TRIM39Q9HCM9 AL160004.1-201ENST00000434311 478 ntTSL 3 BASIC6.2□□□□□ -1.42
TRIM39Q9HCM9 AC096638.2-201ENST00000434965 711 ntBASIC6.2□□□□□ -1.42
TRIM39Q9HCM9 PPIAP10-201ENST00000438675 458 ntBASIC6.2□□□□□ -1.42
TRIM39Q9HCM9 THAP5P1-201ENST00000439089 262 ntBASIC6.2□□□□□ -1.42
TRIM39Q9HCM9 AL450003.1-201ENST00000439447 455 ntTSL 2 BASIC6.2□□□□□ -1.42
TRIM39Q9HCM9 AL157359.2-201ENST00000440372 784 ntTSL 3 BASIC6.2□□□□□ -1.42
TRIM39Q9HCM9 MIR4435-2HG-209ENST00000441075 704 ntTSL 5 BASIC6.2□□□□□ -1.42
TRIM39Q9HCM9 RPS26P30-201ENST00000443431 335 ntBASIC6.2□□□□□ -1.42
Retrieved 100 of 98,524 protein–RNA pairs in 160.8 ms