Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 AC091133.5-201ENST00000603088 301 ntBASIC7.42□□□□□ -1.22
TRAIPQ9BWF2 U73023.1-201ENST00000603134 700 ntBASIC7.42□□□□□ -1.22
TRAIPQ9BWF2 MTCYBP22-201ENST00000603788 447 ntBASIC7.42□□□□□ -1.22
TRAIPQ9BWF2 RNU6-88P-201ENST00000606801 100 ntBASIC7.42□□□□□ -1.22
TRAIPQ9BWF2 EDRF1-AS1-210ENST00000613304 569 ntTSL 5 BASIC7.42□□□□□ -1.22
TRAIPQ9BWF2 AC231657.1-201ENST00000624313 397 ntBASIC7.42□□□□□ -1.22
TRAIPQ9BWF2 PSD3-218ENST00000523619 8145 ntAPPRIS ALT2 TSL 1 (best) BASIC7.42□□□□□ -1.22
TRAIPQ9BWF2 LINC01440-201ENST00000416190 1340 ntTSL 5 BASIC7.42□□□□□ -1.22
TRAIPQ9BWF2 CASC15-206ENST00000606851 1889 ntTSL 2 BASIC7.42□□□□□ -1.22
TRAIPQ9BWF2 AC011346.1-201ENST00000638059 1359 ntAPPRIS ALT2 TSL 5 BASIC7.42□□□□□ -1.22
TRAIPQ9BWF2 LINC00598-211ENST00000636621 3241 ntTSL 1 (best) BASIC7.42□□□□□ -1.22
TRAIPQ9BWF2 ZNF600-201ENST00000338230 3829 ntAPPRIS P1 TSL 1 (best) BASIC7.42□□□□□ -1.22
TRAIPQ9BWF2 C2orf16-201ENST00000408964 6200 ntAPPRIS P2 BASIC7.42□□□□□ -1.22
TRAIPQ9BWF2 GABRR1-206ENST00000611484 3259 ntTSL 1 (best) BASIC7.42□□□□□ -1.22
TRAIPQ9BWF2 RAPGEF4-214ENST00000538974 3920 ntTSL 2 BASIC7.42□□□□□ -1.22
TRAIPQ9BWF2 VNN2-201ENST00000326499 2118 ntAPPRIS P4 TSL 1 (best) BASIC7.42□□□□□ -1.22
TRAIPQ9BWF2 KLHL5-201ENST00000261425 3425 ntAPPRIS P1 TSL 1 (best) BASIC7.42□□□□□ -1.22
TRAIPQ9BWF2 AQP4-205ENST00000581374 1586 ntTSL 1 (best) BASIC7.42□□□□□ -1.22
TRAIPQ9BWF2 STAMBPL1-202ENST00000371924 2208 ntAPPRIS P1 TSL 1 (best) BASIC7.42□□□□□ -1.22
TRAIPQ9BWF2 ZNF83-205ENST00000594682 2890 ntTSL 4 BASIC7.41□□□□□ -1.22
TRAIPQ9BWF2 ENPP3-201ENST00000357639 3162 ntAPPRIS P1 TSL 1 (best) BASIC7.41□□□□□ -1.22
TRAIPQ9BWF2 AC090017.1-201ENST00000548612 1779 ntBASIC7.41□□□□□ -1.22
TRAIPQ9BWF2 LGI1-228ENST00000637689 1802 ntTSL 5 BASIC7.41□□□□□ -1.22
TRAIPQ9BWF2 ALG11-202ENST00000521508 2558 ntAPPRIS P1 TSL 1 (best) BASIC7.41□□□□□ -1.22
TRAIPQ9BWF2 SGK3-201ENST00000345714 4055 ntAPPRIS P1 TSL 1 (best) BASIC7.41□□□□□ -1.22
TRAIPQ9BWF2 LINC01951-201ENST00000377300 1925 ntTSL 2 BASIC7.41□□□□□ -1.22
TRAIPQ9BWF2 GRPR-201ENST00000380289 1929 ntAPPRIS P1 TSL 1 (best) BASIC7.41□□□□□ -1.22
TRAIPQ9BWF2 DPYD-202ENST00000370192 4412 ntAPPRIS P1 TSL 1 (best) BASIC7.41□□□□□ -1.22
TRAIPQ9BWF2 PROX1-AS1-202ENST00000433082 5266 ntTSL 5 BASIC7.41□□□□□ -1.22
TRAIPQ9BWF2 RNU6-251P-201ENST00000363235 104 ntBASIC7.41□□□□□ -1.22
TRAIPQ9BWF2 RNA5SP85-201ENST00000365378 119 ntBASIC7.41□□□□□ -1.22
TRAIPQ9BWF2 C1orf105-203ENST00000367727 985 ntAPPRIS P1 TSL 1 (best) BASIC7.41□□□□□ -1.22
TRAIPQ9BWF2 DAOA-202ENST00000375936 742 ntAPPRIS P3 TSL 1 (best) BASIC7.41□□□□□ -1.22
TRAIPQ9BWF2 IGKV3-7-201ENST00000390247 445 ntAPPRIS P1 BASIC7.41□□□□□ -1.22
TRAIPQ9BWF2 AC073264.1-201ENST00000411508 416 ntBASIC7.41□□□□□ -1.22
TRAIPQ9BWF2 TMBIM7P-201ENST00000418074 855 ntBASIC7.41□□□□□ -1.22
TRAIPQ9BWF2 TXNDC8-204ENST00000423740 356 ntTSL 1 (best) BASIC7.41□□□□□ -1.22
TRAIPQ9BWF2 AL049749.1-201ENST00000430281 632 ntTSL 2 BASIC7.41□□□□□ -1.22
TRAIPQ9BWF2 AL590128.1-201ENST00000433407 286 ntBASIC7.41□□□□□ -1.22
TRAIPQ9BWF2 B3GNT2P1-201ENST00000434960 952 ntBASIC7.41□□□□□ -1.22
TRAIPQ9BWF2 AC068888.2-201ENST00000435621 536 ntTSL 3 BASIC7.41□□□□□ -1.22
TRAIPQ9BWF2 AL138767.3-201ENST00000438082 495 ntTSL 3 BASIC7.41□□□□□ -1.22
TRAIPQ9BWF2 AC097463.1-201ENST00000447288 481 ntBASIC7.41□□□□□ -1.22
TRAIPQ9BWF2 SLC31A1P1-201ENST00000451221 567 ntBASIC7.41□□□□□ -1.22
TRAIPQ9BWF2 AC135721.2-201ENST00000464237 300 ntBASIC7.41□□□□□ -1.22
TRAIPQ9BWF2 RN7SL216P-201ENST00000471607 298 ntBASIC7.41□□□□□ -1.22
TRAIPQ9BWF2 RSRC1-207ENST00000475278 1195 ntTSL 5 BASIC7.41□□□□□ -1.22
TRAIPQ9BWF2 RPS4XP23-201ENST00000487801 237 ntBASIC7.41□□□□□ -1.22
TRAIPQ9BWF2 OR4G11P-201ENST00000492842 939 ntBASIC7.41□□□□□ -1.22
TRAIPQ9BWF2 AC026826.1-201ENST00000493002 361 ntBASIC7.41□□□□□ -1.22
TRAIPQ9BWF2 AC084117.1-201ENST00000496975 270 ntTSL 5 BASIC7.41□□□□□ -1.22
TRAIPQ9BWF2 AC008443.2-201ENST00000499096 566 ntTSL 2 BASIC7.41□□□□□ -1.22
TRAIPQ9BWF2 MSMO1-203ENST00000504317 1026 ntTSL 1 (best) BASIC7.41□□□□□ -1.22
TRAIPQ9BWF2 AC010424.1-201ENST00000506336 297 ntBASIC7.41□□□□□ -1.22
TRAIPQ9BWF2 THAP6-209ENST00000507556 1134 ntTSL 2 BASIC7.41□□□□□ -1.22
TRAIPQ9BWF2 SNRPCP6-201ENST00000528310 210 ntBASIC7.41□□□□□ -1.22
TRAIPQ9BWF2 AC140063.1-201ENST00000541343 259 ntBASIC7.41□□□□□ -1.22
TRAIPQ9BWF2 LINC02468-201ENST00000543778 633 ntTSL 5 BASIC7.41□□□□□ -1.22
TRAIPQ9BWF2 AC087311.2-201ENST00000549660 320 ntTSL 4 BASIC7.41□□□□□ -1.22
TRAIPQ9BWF2 LINC02386-201ENST00000551202 509 ntTSL 3 BASIC7.41□□□□□ -1.22
TRAIPQ9BWF2 C14orf119-202ENST00000554203 725 ntAPPRIS P1 TSL 2 BASIC7.41□□□□□ -1.22
TRAIPQ9BWF2 AC012170.2-201ENST00000560380 667 ntTSL 3 BASIC7.41□□□□□ -1.22
TRAIPQ9BWF2 TRIM69-208ENST00000560442 1262 ntTSL 1 (best) BASIC7.41□□□□□ -1.22
TRAIPQ9BWF2 DISC1FP1-201ENST00000561596 545 ntTSL 5 BASIC7.41□□□□□ -1.22
TRAIPQ9BWF2 AC106745.1-201ENST00000566798 464 ntTSL 2 BASIC7.41□□□□□ -1.22
TRAIPQ9BWF2 AL136084.2-222ENST00000589105 885 ntTSL 5 BASIC7.41□□□□□ -1.22
TRAIPQ9BWF2 PLEKHA3P1-201ENST00000598554 894 ntBASIC7.41□□□□□ -1.22
TRAIPQ9BWF2 AC073544.2-201ENST00000601155 540 ntBASIC7.41□□□□□ -1.22
TRAIPQ9BWF2 AL139286.2-201ENST00000606838 396 ntBASIC7.41□□□□□ -1.22
TRAIPQ9BWF2 AL022238.2-202ENST00000607915 658 ntTSL 5 BASIC7.41□□□□□ -1.22
TRAIPQ9BWF2 MIR6780B-201ENST00000610307 79 ntBASIC7.41□□□□□ -1.22
TRAIPQ9BWF2 AL354821.1-201ENST00000617598 809 ntTSL 3 BASIC7.41□□□□□ -1.22
TRAIPQ9BWF2 AC092184.1-201ENST00000625042 715 ntBASIC7.41□□□□□ -1.22
TRAIPQ9BWF2 RACK1-235ENST00000626067 564 ntTSL 2 BASIC7.41□□□□□ -1.22
TRAIPQ9BWF2 AL049767.1-201ENST00000636811 514 ntTSL 5 BASIC7.41□□□□□ -1.22
TRAIPQ9BWF2 LEUTX-202ENST00000638280 667 ntAPPRIS P1 TSL 3 BASIC7.41□□□□□ -1.22
TRAIPQ9BWF2 RFC1-201ENST00000349703 4859 ntAPPRIS P3 TSL 1 (best) BASIC7.41□□□□□ -1.22
TRAIPQ9BWF2 FANCD2-201ENST00000287647 5219 ntAPPRIS P3 TSL 1 (best) BASIC7.41□□□□□ -1.22
TRAIPQ9BWF2 GRIA2-204ENST00000393815 5260 ntTSL 1 (best) BASIC7.41□□□□□ -1.22
TRAIPQ9BWF2 FAM13C-219ENST00000621119 3400 ntAPPRIS ALT2 TSL 5 BASIC7.41□□□□□ -1.22
TRAIPQ9BWF2 LINC02092-201ENST00000455366 2472 ntTSL 1 (best) BASIC7.41□□□□□ -1.22
TRAIPQ9BWF2 INTS12-211ENST00000618810 1502 ntAPPRIS P1 TSL 5 BASIC7.41□□□□□ -1.22
TRAIPQ9BWF2 TTTY10-202ENST00000455084 1628 ntTSL 1 (best) BASIC7.41□□□□□ -1.22
TRAIPQ9BWF2 HSPD1P8-201ENST00000400121 1658 ntBASIC7.41□□□□□ -1.22
TRAIPQ9BWF2 MRRFP1-201ENST00000435941 1675 ntBASIC7.41□□□□□ -1.22
TRAIPQ9BWF2 TLR4-202ENST00000394487 3908 ntTSL 1 (best) BASIC7.41□□□□□ -1.22
TRAIPQ9BWF2 MARCH6-201ENST00000274140 9569 ntAPPRIS P1 TSL 1 (best) BASIC7.41□□□□□ -1.22
TRAIPQ9BWF2 ZRANB2-201ENST00000254821 2821 ntAPPRIS ALT2 TSL 1 (best) BASIC7.41□□□□□ -1.22
TRAIPQ9BWF2 MR1-209ENST00000617803 7584 ntTSL 5 BASIC7.41□□□□□ -1.22
TRAIPQ9BWF2 AL357568.1-201ENST00000421530 1963 ntTSL 2 BASIC7.4□□□□□ -1.22
TRAIPQ9BWF2 TCL6-203ENST00000459662 3307 ntTSL 2 BASIC7.4□□□□□ -1.22
TRAIPQ9BWF2 NXF2B-203ENST00000604395 2143 ntAPPRIS P1 TSL 1 (best) BASIC7.4□□□□□ -1.22
TRAIPQ9BWF2 NXF2-201ENST00000604790 2143 ntAPPRIS P1 TSL 1 (best) BASIC7.4□□□□□ -1.22
TRAIPQ9BWF2 CPED1-203ENST00000423795 2189 ntTSL 1 (best) BASIC7.4□□□□□ -1.22
TRAIPQ9BWF2 TPRG1-204ENST00000433971 2296 ntAPPRIS P1 TSL 2 BASIC7.4□□□□□ -1.22
TRAIPQ9BWF2 ARHGAP28-201ENST00000262227 5369 ntAPPRIS ALT2 TSL 1 (best) BASIC7.4□□□□□ -1.22
TRAIPQ9BWF2 CLCN3-204ENST00000504131 5592 ntTSL 5 BASIC7.4□□□□□ -1.22
TRAIPQ9BWF2 LRRC37B-220ENST00000584368 2773 ntTSL 1 (best) BASIC7.4□□□□□ -1.22
TRAIPQ9BWF2 ZNF532-224ENST00000591808 5171 ntAPPRIS P1 TSL 1 (best) BASIC7.4□□□□□ -1.22
TRAIPQ9BWF2 CYLD-210ENST00000566206 3104 ntTSL 1 (best) BASIC7.4□□□□□ -1.22
Retrieved 100 of 98,524 protein–RNA pairs in 76.7 ms