Protein–RNA interactions for Protein: Q06945

SOX4, Transcription factor SOX-4, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX4Q06945 VEGFD-201ENST00000297904 2037 ntAPPRIS P1 TSL 1 (best) BASIC6.87□□□□□ -1.31
SOX4Q06945 TNRC6A-201ENST00000315183 8303 ntAPPRIS ALT2 TSL 5 BASIC6.87□□□□□ -1.31
SOX4Q06945 NPHP1-203ENST00000393272 2752 ntTSL 1 (best) BASIC6.87□□□□□ -1.31
SOX4Q06945 LEPR-205ENST00000371060 5135 ntTSL 1 (best) BASIC6.87□□□□□ -1.31
SOX4Q06945 SORBS1-202ENST00000306402 5858 ntAPPRIS ALT2 TSL 1 (best) BASIC6.87□□□□□ -1.31
SOX4Q06945 ZNF566-202ENST00000424129 2644 ntAPPRIS P3 TSL 2 BASIC6.87□□□□□ -1.31
SOX4Q06945 TNRC6A-202ENST00000395799 8438 ntAPPRIS P3 TSL 5 BASIC6.87□□□□□ -1.31
SOX4Q06945 NCOA4P2-201ENST00000340589 1813 ntBASIC6.87□□□□□ -1.31
SOX4Q06945 AP2B1-215ENST00000616681 3267 ntTSL 2 BASIC6.87□□□□□ -1.31
SOX4Q06945 RASGEF1B-214ENST00000638048 2386 ntTSL 5 BASIC6.87□□□□□ -1.31
SOX4Q06945 TPTE2-202ENST00000382978 1677 ntTSL 5 BASIC6.87□□□□□ -1.31
SOX4Q06945 CREM-217ENST00000439705 2306 ntTSL 5 BASIC6.87□□□□□ -1.31
SOX4Q06945 IGF2BP3-201ENST00000258729 4250 ntAPPRIS P1 TSL 1 (best) BASIC6.87□□□□□ -1.31
SOX4Q06945 DDX60-201ENST00000393743 6071 ntAPPRIS P1 TSL 1 (best) BASIC6.87□□□□□ -1.31
SOX4Q06945 AC124017.1-201ENST00000508112 1594 ntTSL 5 BASIC6.86□□□□□ -1.31
SOX4Q06945 NRG3-208ENST00000556918 1581 ntAPPRIS ALT2 TSL 1 (best) BASIC6.86□□□□□ -1.31
SOX4Q06945 ANXA1-201ENST00000257497 1509 ntAPPRIS P1 TSL 1 (best) BASIC6.86□□□□□ -1.31
SOX4Q06945 ZNF507-203ENST00000544431 5764 ntTSL 1 (best) BASIC6.86□□□□□ -1.31
SOX4Q06945 AC068733.2-201ENST00000605434 1418 ntBASIC6.86□□□□□ -1.31
SOX4Q06945 LINC02466-201ENST00000500092 1963 ntTSL 1 (best) BASIC6.86□□□□□ -1.31
SOX4Q06945 AC104662.2-201ENST00000512921 1388 ntAPPRIS P1 TSL 2 BASIC6.86□□□□□ -1.31
SOX4Q06945 ATP10D-201ENST00000273859 6655 ntAPPRIS P1 TSL 1 (best) BASIC6.86□□□□□ -1.31
SOX4Q06945 NKRF-204ENST00000542113 3351 ntTSL 3 BASIC6.86□□□□□ -1.31
SOX4Q06945 DDX58-202ENST00000379883 4353 ntAPPRIS P1 TSL 1 (best) BASIC6.86□□□□□ -1.31
SOX4Q06945 SSMEM1-201ENST00000297819 1159 ntAPPRIS P1 TSL 1 (best) BASIC6.86□□□□□ -1.31
SOX4Q06945 MT-CYB-201ENST00000361789 1141 ntAPPRIS P1 BASIC6.86□□□□□ -1.31
SOX4Q06945 ZBTB8OS-202ENST00000373501 598 ntTSL 5 BASIC6.86□□□□□ -1.31
SOX4Q06945 SRY-201ENST00000383070 845 ntAPPRIS P1 BASIC6.86□□□□□ -1.31
SOX4Q06945 TAS2R31-201ENST00000390675 1021 ntAPPRIS P1 BASIC6.86□□□□□ -1.31
SOX4Q06945 AL139098.1-201ENST00000407291 389 ntBASIC6.86□□□□□ -1.31
SOX4Q06945 AL139805.1-201ENST00000407837 289 ntBASIC6.86□□□□□ -1.31
SOX4Q06945 NUP35P2-201ENST00000416748 943 ntBASIC6.86□□□□□ -1.31
SOX4Q06945 RPS7P14-201ENST00000426405 583 ntBASIC6.86□□□□□ -1.31
SOX4Q06945 AL354707.3-201ENST00000427308 331 ntBASIC6.86□□□□□ -1.31
SOX4Q06945 HMGB1P31-201ENST00000437242 427 ntBASIC6.86□□□□□ -1.31
SOX4Q06945 AC113331.2-201ENST00000445557 926 ntAPPRIS P1 BASIC6.86□□□□□ -1.31
SOX4Q06945 HMGB1P5-202ENST00000451497 985 ntBASIC6.86□□□□□ -1.31
SOX4Q06945 AL133351.3-201ENST00000454998 193 ntBASIC6.86□□□□□ -1.31
SOX4Q06945 AC006947.1-201ENST00000457168 484 ntTSL 3 BASIC6.86□□□□□ -1.31
SOX4Q06945 AC007000.3-201ENST00000459742 617 ntTSL 3 BASIC6.86□□□□□ -1.31
SOX4Q06945 ZBTB8OS-205ENST00000465588 548 ntTSL 2 BASIC6.86□□□□□ -1.31
SOX4Q06945 AL121769.1-201ENST00000469473 401 ntBASIC6.86□□□□□ -1.31
SOX4Q06945 AC072039.1-201ENST00000477611 581 ntBASIC6.86□□□□□ -1.31
SOX4Q06945 AC092436.4-201ENST00000510905 483 ntTSL 3 BASIC6.86□□□□□ -1.31
SOX4Q06945 MAST4-IT1-201ENST00000514241 658 ntBASIC6.86□□□□□ -1.31
SOX4Q06945 RNU6-507P-201ENST00000516045 100 ntBASIC6.86□□□□□ -1.31
SOX4Q06945 RN7SKP70-201ENST00000516655 271 ntBASIC6.86□□□□□ -1.31
SOX4Q06945 NRG1-IT3-201ENST00000519023 505 ntTSL 3 BASIC6.86□□□□□ -1.31
SOX4Q06945 IGHV4-55-201ENST00000520889 368 ntBASIC6.86□□□□□ -1.31
SOX4Q06945 TPT1-AS1-216ENST00000522845 403 ntTSL 3 BASIC6.86□□□□□ -1.31
SOX4Q06945 DEFB108A-201ENST00000530110 222 ntBASIC6.86□□□□□ -1.31
SOX4Q06945 NPIPB14P-203ENST00000532298 987 ntBASIC6.86□□□□□ -1.31
SOX4Q06945 MIR100HG-221ENST00000534297 572 ntTSL 4 BASIC6.86□□□□□ -1.31
SOX4Q06945 AC005906.2-204ENST00000541095 481 ntTSL 3 BASIC6.86□□□□□ -1.31
SOX4Q06945 LINC02293-201ENST00000548335 574 ntTSL 5 BASIC6.86□□□□□ -1.31
SOX4Q06945 AC090971.2-201ENST00000558142 510 ntTSL 3 BASIC6.86□□□□□ -1.31
SOX4Q06945 BLOC1S6-206ENST00000564765 706 ntTSL 4 BASIC6.86□□□□□ -1.31
SOX4Q06945 AC024361.3-201ENST00000570919 333 ntTSL 5 BASIC6.86□□□□□ -1.31
SOX4Q06945 AC074237.1-201ENST00000577674 471 ntTSL 3 BASIC6.86□□□□□ -1.31
SOX4Q06945 AC005154.1-222ENST00000579024 341 ntTSL 5 BASIC6.86□□□□□ -1.31
SOX4Q06945 AP001542.2-201ENST00000593141 364 ntBASIC6.86□□□□□ -1.31
SOX4Q06945 DYNLL1P1-201ENST00000595442 269 ntBASIC6.86□□□□□ -1.31
SOX4Q06945 ZNF682-208ENST00000596019 552 ntTSL 5 BASIC6.86□□□□□ -1.31
SOX4Q06945 ZNF814-214ENST00000600634 461 ntTSL 1 (best) BASIC6.86□□□□□ -1.31
SOX4Q06945 AC103881.1-201ENST00000603476 538 ntBASIC6.86□□□□□ -1.31
SOX4Q06945 AC012360.2-201ENST00000609349 391 ntBASIC6.86□□□□□ -1.31
SOX4Q06945 AL589743.7-201ENST00000612637 233 ntBASIC6.86□□□□□ -1.31
SOX4Q06945 GPR171-203ENST00000617554 960 ntAPPRIS P1 BASIC6.86□□□□□ -1.31
SOX4Q06945 AC015722.2-201ENST00000622210 551 ntBASIC6.86□□□□□ -1.31
SOX4Q06945 AC012254.5-201ENST00000623573 478 ntBASIC6.86□□□□□ -1.31
SOX4Q06945 TEX41-256ENST00000626411 368 ntTSL 5 BASIC6.86□□□□□ -1.31
SOX4Q06945 AC025048.6-202ENST00000627667 438 ntBASIC6.86□□□□□ -1.31
SOX4Q06945 AL157786.1-207ENST00000627771 695 ntBASIC6.86□□□□□ -1.31
SOX4Q06945 AC116618.1-201ENST00000634617 774 ntBASIC6.86□□□□□ -1.31
SOX4Q06945 AC087565.3-203ENST00000641018 837 ntBASIC6.86□□□□□ -1.31
SOX4Q06945 USP9X-201ENST00000324545 12401 ntTSL 5 BASIC6.86□□□□□ -1.31
SOX4Q06945 AC018557.1-201ENST00000569274 1790 ntTSL 5 BASIC6.86□□□□□ -1.31
SOX4Q06945 SPATA6-202ENST00000371843 2297 ntTSL 1 (best) BASIC6.86□□□□□ -1.31
SOX4Q06945 KIAA0391-209ENST00000604948 1706 ntAPPRIS ALT2 TSL 2 BASIC6.86□□□□□ -1.31
SOX4Q06945 GNRHR-201ENST00000226413 2164 ntAPPRIS P1 TSL 1 (best) BASIC6.86□□□□□ -1.31
SOX4Q06945 ZNF727-201ENST00000456806 1679 ntAPPRIS P1 TSL 4 BASIC6.86□□□□□ -1.31
SOX4Q06945 AC001226.2-204ENST00000638101 2645 ntAPPRIS ALT2 TSL 5 BASIC6.86□□□□□ -1.31
SOX4Q06945 TEAD1-205ENST00000527575 3063 ntTSL 5 BASIC6.86□□□□□ -1.31
SOX4Q06945 TSC1-201ENST00000298552 8604 ntAPPRIS P1 TSL 1 (best) BASIC6.86□□□□□ -1.31
SOX4Q06945 AL133243.2-201ENST00000610331 1621 ntBASIC6.86□□□□□ -1.31
SOX4Q06945 ATF7IP2-203ENST00000396559 3641 ntTSL 2 BASIC6.86□□□□□ -1.31
SOX4Q06945 AC010099.4-201ENST00000424515 1453 ntTSL 5 BASIC6.85□□□□□ -1.31
SOX4Q06945 LGALS8-220ENST00000526634 1852 ntAPPRIS ALT2 TSL 5 BASIC6.85□□□□□ -1.31
SOX4Q06945 LINC00862-204ENST00000637098 1400 ntTSL 5 BASIC6.85□□□□□ -1.31
SOX4Q06945 PMCHL2-201ENST00000415808 1841 ntTSL 1 (best) BASIC6.85□□□□□ -1.31
SOX4Q06945 AP002004.1-203ENST00000531091 1768 ntTSL 1 (best) BASIC6.85□□□□□ -1.31
SOX4Q06945 AP005901.5-201ENST00000545779 1796 ntBASIC6.85□□□□□ -1.31
SOX4Q06945 CXCL8-201ENST00000307407 1705 ntAPPRIS P2 TSL 1 (best) BASIC6.85□□□□□ -1.31
SOX4Q06945 N4BP2-201ENST00000261435 9744 ntAPPRIS P1 TSL 5 BASIC6.85□□□□□ -1.31
SOX4Q06945 MEIS1-209ENST00000488550 5111 ntAPPRIS ALT1 TSL 1 (best) BASIC6.85□□□□□ -1.31
SOX4Q06945 KYNUP3-201ENST00000574386 1341 ntBASIC6.85□□□□□ -1.31
SOX4Q06945 AC110716.2-201ENST00000563865 3945 ntBASIC6.85□□□□□ -1.31
SOX4Q06945 MRRFP1-201ENST00000435941 1675 ntBASIC6.85□□□□□ -1.31
SOX4Q06945 OR2B2-201ENST00000303324 1212 ntAPPRIS P1 BASIC6.85□□□□□ -1.31
SOX4Q06945 RNASE2-201ENST00000304625 755 ntAPPRIS P1 TSL 1 (best) BASIC6.85□□□□□ -1.31
Retrieved 100 of 98,524 protein–RNA pairs in 86.8 ms